>input_sequence_67704
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------------------------------------------------------------------------ATGGCGCC
TGCTCGGGAGCTCCAAGAAACCTCGTCGTCTTCGTCGTCATCGACGTCGTCGTATACGACCAGTTCCACGTCCATGTCGT
GCTCGTCCACCGTCACGGACTCTTCGTCGTGTCCCTCCTCGCCGGCGAGCGCCGCCAATGCCGTGAAGGCGGTGCCGCGC
AAGCGGCAGCTGGACGAGGAAGAGGGAGGGCGGGAGGAGACGGAGGAGGGGAAGACGAAGACGACGAA---------GAA
GA---GCAAGCGGAGCAGCGACGGGAAGCACCCGGTGTACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGG
AGATCCGCGAGCCGCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCCACCGCCGAGATGGCCGCGCGCGCGCACGAC
GTCGCCGCGCTCGCCATCAAGGGCGCCCGGTCCGCGCACCTCAACTTCCCGGAGCTCGCCGACGTCCTCCCGCGCGCCGC
CTCGCCGGCGCCCAAGGACGTGCAGGCCGCGGCCGCATTGGCCGCCGCGTTCACGTCTTCACCGCCGCCCTTGTCCACGG
ATCAGTCGGAGGAGGAGGAGGGCCTCATCCAAGAGGAGACCGTCAAGAACGACGCCGGCGCAGACGCTACCACGCCGCCG
GAGTCTGCCGCCACGGCTACGAGCTGCGGCGC---CGCTGAGCAGGC---GGAGGAGGAGCT---GCAGCTGTTCGACCT
GCCGGACCTGCTCCTGGACATCGAGGACGGGTTCGGGTTCTCCACCATGTGGGCTCCGCTCCCCGACGTCGAGGAGGTCA
ATGCGGACCTCCGGCTCGAGGAGCCACTCCTTTGGGAGTAG---------------------------------------
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>chr1B_1_TraesCS1B01G233300
CACCCACTTGAACTTGTACTGTTGAATATCTAGTGTTCACCGAAAAGTTTGGAAATCTAACTAGACATTTAGCAAAGTTT
CAATTAAACTTTAATAGATAATCTCAATTTAACCAAAAATCTCTATAGTGCACCT-ACTTAAGATGACTCGGATCTAGAC
CTGGTCTTATTCCATACGTCTCCACAAATAAAACATGACATCATACATATAAGCACCGCTTGTATACCGAAAAGTATTAA
ATGATAATACCCTTCA----------------------------------------------------------------
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------------------------------------------------CATGCTCTCATGCTCCCAATTTCATAAACACA
CATTTAAATGTTTTAAAAATGTGTGGATATTCACAAAACATGTGTCTACAACTATTTAAAAAAAA-TCAAATACACATAG
AGAAACAAAAGAAACAAAAACGTGAATAGTATAAAAATGACACTACTAACATCTGTATTTTTTTACGTGTTTTTTTTCAA
TTTGCATCTGGAAATTTTAGGGTCTGCAGATGCATGCCTTATAAACATTCATAAAAAAATCAGATA-TTTGTGAACCATT
TGAATGTGGGTTTTCTTTGTAAAAAAAAATGTGGGTTTTCAAAATTAGGAGCATGGGAG---CATGCATGTGAATGGTGG
CATCACCTGATATTCTCCCTTGTCCTAGCTCCCAAGCCCACGGGCCACAGCCACTCAAATTTGTACCGTTGAATCTGTGG
TGCCAATTTTATGAAATGATGATGTATAGCATGTAGTACCACAAGGCACTGAAAAAACAATGATGAACATGTGCCCTTGG
AAACAAAACAGTGGGGACAACACCAGGGGGGCACCAAGCATATATATCGCCCTCCCATGGTTTC----------------
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-------------------------------------------------------TTAATTAGCTTTTTCACCAGTAAAC
TTTTCTCCCACCTCG--CTCTCTCATATAAA-CCCCCACTGCAGATACGAACAGACACACACCACCACAAGGCCAAGGCG
GAGCAGCGAGAGCTCGCTTGCAGCAAGCAAAGCCATACTCCTTCCCTCGTCGTGCACCCACTGCACGCAGCCATGGCGCC
TGCTCGGGAGCTCCAAGAAACCTCGTCGTCTTCGTCGTCATCGACGTCGTCGTATACGACCAGTTCCACGTCCATGTCGT
GCTCGTCCACCGTCACGGACTCTTCGTCGTGTCCCTCCTCGCCGGCGAGCGCCGCCAATGCCGTGAAGGCGGTGCCGCGC
AAGCGGCAGCTGGACGAGGAAGAGGGAGGGCGGGAGGAGACGGAGGAGGGGAAGACGAAGACGACGAA---------GAA
GA---GCAAGCGGAGCAGCGACGGGAAGCACCCGGTGTACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGG
AGATCCGCGAGCCGCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCCACCGCCGAGATGGCCGCGCGCGCGCACGAC
GTCGCCGCGCTCGCCATCAAGGGCGCCCGGTCCGCGCACCTCAACTTCCCGGAGCTCGCCGACGTCCTCCCGCGCGCCGC
CTCGCCGGCGCCCAAGGACGTGCAGGCCGCGGCCGCATTGGCCGCCGCGTTCACGTCTTCACCGCCGCCCTTGTCCACGG
ATCAGTCGGAGGAGGAGGAGGGCCTCATCCAAGAGGAGACCGTCAAGAACGACGCCGGCGCAGACGCTACCACGCCGCCG
GAGTCTGCCGCCACGGCTACGAGCTGCGGCGC---CGCTGAGCAGGC---GGAGGAGGAGCT---GCAGCTGTTCGACCT
GCCGGACCTGCTCCTGGACATCGAGGACGGGTTCGGGTTCTCCACCATGTGGGCTCCGCTCCCCGACGTCGAGGAGGTCA
ATGCGGACCTCCGGCTCGAGGAGCCACTCCTTTGGGAGTAGCAGATGCTTGCGAAGACTAGATGATCAAATATACTAGGA
GTACTTAATCGCTAGTGTAATCTCTTCTTTGCCTTTTTTTCT-TTCCTTTTTTTACTACTAGTGTTTTTTTAGTTTGCC-
--TTTTTTTTTACTTTGTTGGTTTATAATAAGCATAAGGGAGTACGTAGTGATATACATATGC-AAAAAAAGTTTG---C
TACTACCACTACATGTTACCTGAGAGAGTTAATTAT---TACTATTACCACATAGTAATGTGTGAATCCTAGTGGTTTGA
CCTTGATAGATTTTAGGCGA-----TGTACTGTAT------------TCGTTATGCTTGGAATACTCTTTGTACTGCATT
GAGTTTCCCCAGAAAAAAAAATA-TGTACATTTGAGTTCCATGCCATGGAGACTGAGATGAGAAGAAGGAATAGAATGCC
AAGAAGCTCGAAGTTAAGAGGTCACTAAAGCTGACTTTGAAAACTTAATCTATTCCAC------CCCTCACTTGTTTATC
ATCAAGTGATGTTGCTCAACAAGAGGTGCTTTGCTACTGCCAGCAATTTCATGTTTCTTTATCAGCAT-CAGATCCTGTC
GTAAACATCATGTTGAACTTTATTAGTTTGCTC----AGTGAAGTTGGGAGAAGAAG----CTCTTTTACTGTTCAACAG
CAGAGAAAAAAAAGGGTTAAAAATGTCAATTTGTGGATATGAGGTTGTTTGGCTAGTGTTGGTCTCCTCCATGATCAAGC
AAGCAGAGGCAGTGCAGTGCAGACAAAAGGCGGCACTCCTCATGTGGCTCCAGTGCAGCATCTCATCATCT---------
TCTTCTTCTTCTTCCTCTGGCTTCCCCTGCTTTTTTTCTTCCTTTTGCCATCTGCTTTGGAAAGCTGCTGCTGATCAAGA
TGAGGGAATGAGATTCTTCTTCTGCT------TCTTTTCCTTGTGGTAGAGAGAGATGAGGGAGGTTATTTTAAGCATGG
CCATCATTTCCAGTGAGAAAGCTAATGCTCCCACTTACCAAGCATGTGCCGGACAGAGCC
>chr1D_1
CAACCACTCGAACTTGTACTGTTGAATATCTAGTGTTTACTGAAATGTTTGGAAATCTAACTAGACATTTCGCAAAGTTT
CAATTAAACTTTAATAGATAATCTCAATTTAACCAAAAATCTCCATAGTACACCTAACTTAAGATGACTCGGATCTAGAC
CTGGTCTTATCCCATACGTGTCCACAAATAAGACATGACATCATACATATAAGCACCGCTTGTATACCAAAAAGTATTAA
ATGATAACACCTAGTGGCAGAGCCAGGAAAACTTAATTAGGGGGGCCAACTGATGTTAAATCTTGTTGGGAGGGCCAAAG
CCAGCAAAATCATGATAATGCACAGAATTAGCAGCAGGTAATCACTTATGTGTGGAAAATTCTGCATGTTGGCCTGGGCC
GGGGCCCCTGCCGGCACCCCCTGCCTCCGCCACTGATAACATCCTTCGCATGCTCTCATGCTCCCAATTTCATAAACACA
CATTTGAATGTTTTAAAAATGTGTGGATATTCACAAAACATGTGTCTACAACTATTTAAAAAAAAATCAAATACACATAG
AGAAACAAAAGAAACAAAAACGTGAATAGTGTAAAAACGACACTACTAACGTATGTATTTTTTTATGTGTGTTTTTTCAA
TTTGCATTTGAAAATTTTAGGGACTGCAGATACTTTTCTTATGTACATTCATAAACAAAATCAGACCTTTGTGAACCATT
TAAATGTGGGTTTTCTTTGTAAAAAGAAAAGTGGGTTTTCAAAATTAGGAGCATGGGAG---CATGCATGTGAATGGTGG
CATCACCTGATATTCTCCCTTGTCCTAGCTCCAAAGCCCACCA-------CCACTCAAATTTGTACCGTTGAATCTGTGG
TGCCAATTTTATGAAACGATGATGCATATCATGTAGTACCACAAGGCACCGAAAACCCAATGATGAACATGTGCCCTTGG
AAACAAAACAGTGGGGACAACACGAGGGGGGCACCAAGCATATATATCGCCCTCCCATGGTTTC----------------
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-------------------------------------------------------TTAATTAGCTTTTTCACCAGTAACC
TTTTTTCCCACCTCTCTCTCTCTCATATAAACCCCCCACTGCAGATACGAACAGACACACACCACCGCAAGTCCAAGGCG
GAGCGGCAAGAGCTCACGCTTGCAGCGAAACCATACTCTCCATCCCTCTTCGTGCGCCCACTGCACGCGGCCATGGCGCC
CGCTCGGGAGCTCCAAGAAACCTCGTCGTCCTCGTCGTCATCGACGTCGTCGTATACGACCAGCTCCACGTCCATGTCGT
GCTCGTCCACCGTCACGGACTCTTCGTCGTGCCCCTCCTCGCCGGCGAGCGCAGCCAATGCCGTGAAGGAGGCGCCGCGC
AAGCGGCAGCTGGACGAGGGAGAGGGAGGGCGTGAGGAGACGGAGGAGGGGAAGGCGACGACGACGAA---------GAA
GAAGAGCAAGCGGAGCAGCGACGGGAAGCACCCGGTGTACCGCGGTGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGG
AGATCCGCGAGCCGCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCCACCGCCGAGATGGCCGCGCGCGCGCACGAC
GTCGCCGCGCTCGCCATCAAGGGCGCCCGGTCCGCGCACCTCAACTTCCCGGAGCTCGCCGACGTCCTCCCGCGCGCCGC
CTCGCCGGCACCCAAGGACGTGCAGGCCGCCGCCGCATTGGCCGCCGCGTTCACGTCTTCGCCGCCGCCCATGTCCACGG
ATCAGTCGGAGGAGGAGGAGGGCCTCATCCAAGAGGAGACCGTCAAGAACGACGCCGGCGCGGACGCTACCGCGCCGCCG
GAGTCTGCCGCCACGGCTACGAGCTGCGGCGCCGCCGCTGAGCAGGCGGAGGAGGAGGAGCT---GCAGCTGTTCGACCT
GCCGGACCTGCTCCTGGACATCGAGGACGGGTTCGGGTTCTCCACCATGTGGGCTCCGCTCCCCGACGTCGAGGAGGTCA
ATGCAGACCTCCGGCTCGAGGAGCCACTCCTTTGGGAGTAGTAGATGCTTGCGAAGACTAGATGATCAAATATACTAGGA
GTACTTAATTGCTAGTGTAATCTCTTCTTTGCCTTTTTTTCTTTTCCTTCTTTTACTACTAGTGTTTTTTTTAGTTTGCC
TTTTTTTTTTTACTTTGTTGGTTTA--ATAAGCACAAGGGAGTACGTAGTGATATACATATGCAAAAAAAAGTTTG---C
TACTACCACTACATGTTACCTGAGAGAGTTAATTAT---TACTATTACCACATAGTAATGTGTGGATCCTAGTGGTTTGA
CCTTGATAGATTTTAGGCGA-----TGTACTCTTTGTAATGTGTGGATCGTTATGCTTGGAATACTCTTTGTACTGCATT
GAGTTTCCCCAG-AAAAATAATA-TATACATTTGAGTGTGATGCCATGGAGACTGAGATGAGAAGAAGGAATAGAATGCC
GAGAAGCTCGAAGTTAAGAGGCCACTGAAGCTGACTTTGGAAACTTGATCTATTCCAC------CCCTCACTTGTTTATC
ATCAAGCGATGTTGCTCAACAAGAGGTGCTTTGCTACTGCCAGCGATTTCATGTTTCTTTATCAGCATTCAGATCCTGTC
GTAAACACCATGTTGAACTTTATTAGTTAGTTTGCCAAGTGAAGTTGGGAGAAGAAG----CTCTTTTACTGTTCAACAG
C--AGAAAAAAAAGGGGTTAAAATGTCAATTTGTGGATATGAGATTGTTTGGCTAGTGTTGGTCTCCTCCATGATCAAGC
AAGCAAGCAGAG-GCAGTGCAGACAAAAGGTGGCACTCCTCATGTGGCTCCAGTGCAGCATCTCATCATCTTCA------
TCTTCTTCTTCTTCCTCTGGCTTCCCCTGCTTTTTTCTC-CCTTTTGCCATCTGCTTTGGAAAGCTGCTGCTGATCAAGA
TGAGGGAATGAGATTCTTCTTCTGCTGCTGCTTCTTTTCCTTGTGGTAGAGAGAGATGAGGGAGGTTATTTTAAGCGTGG
CCATCATTTCCAGTGAGAAAGCTAATGCTCCCACTTACCAAGCATGTGCCGGACAGAGCC
>chr1A_567
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-----------------------------------------AAATTAGGAGCATGGGAGGAGCATGCATGTGAATGGTGG
CATCACCTGATATTCTCCCTTGTCCTAGCTCCAAAGCCCACCA-------CCACTCAAATTTGTACCGTTGAATCTGTGG
TGCCAATTTTGTGAAATGATGATGTATATCATGTAGTGCCACAAGGCACCAAAAAGCCAATGATGAACATGTGCCCTTGG
AAACAAAACAGTGGGGACAAGACCAGGGGGGCACCAAGCATATATATCGCCCTCCCATGGTTTCTTAATGGACCCCGATA
ACTGCCACACGCGTGGTGTATCGGATGGTTGTGCCGCACGTCCTGTGTGGCACGGAGACGACCCCGCCCACACGATCGCG
TCCGAGCGCGCGCAGCCACAGCCCGCACGTCCGGTGCAGCGCGATCGCCCCGCACGAGCACGTCCGGGTGAGCGAGCACG
CGGCCCGCACGACCCGTCTCGGCCGTCGCCCCTCCCCACCTGCGAGCCACACGCCCCGCGTGTCAGTAACCACGCGTCCC
GCCACGATTGGCATGATCCGGACCCTCTTCAGTTGCCATGTTGCTCAACTGCAGTTGCCATATTGCTGAACTACAGTTGC
CATGTCGGACAACTACAGTTGCCATGGTTGCTCAACTGCAGTTGCCGTCTTAGGTCAAGTGCCGGATGCCATTTTTGGGC
AACTGCAGTTGTTGCCATATCGGACAACTACAGTTATCATGATTTTGGAAAACTTTAAGAGTTGCCACCTACTAACACTA
GACAGTTGTCATGTAACGTTGCAAAACAGACGTGGCAACAATAACATGTTCGGGTAAAAAGAGAGTTGCTATATGCTTAT
AAGCATGCTAGGGTAGTTGCCATGTATCCTGCAAAACACATGGCAACTGATGGCTTTTGGTGTGTGGGAGAGGAGACGGG
AGGGCAGTTGCCATGTATCCTGCAAAACACATAGCAAACTGATGGCTTTTGGTGTGTGGAAGAGGAGACGGGAGGGCAGT
TGTCATGTATCCTGCAAAACACATGGCAACTGATGGTTTTTGGTGTGTGGGAGAGGAGACGGGCATGTGGGTGACGGTGG
TATCTTTAGGAGTTGCCACCTACTAACACTGGACAGTTGCCATGTAGCACTAAAAAACATGGCAAAAAACATGTTACGGG
TAAAAAGAGAGTTGCCATCTGCTTACAATCACAAATAGGGCAGTTGCCATGTACCCTTCAAAAACATGGCAAATGACAGC
TTAGGTGTGGGAGAGTGGGTGAATGGCAGTCGTGAGAGATGTGAAATAGGAGTGGTGCGTGGCGTGCGGGCGCGACAGCA
GTTCCACCGCACGCCCCGACTGGCGAACGTTGGCCGCGGAGAGAAAACAGGCGTGTGGGCGAACTCCCCCACATGCCACA
CACACGAGTGGTCCTACGTGGCACATAAAATCAATCTTTTTATGCCAAGATTCGTGCAAAAGGCGTTGGACGGTGATGTA
GGTGTGTGGGCGAGTTGGCTAACATCCACACGTGTGGGCGTTAACATTTTCGTTCTTAATTAGCTTTTTCACCAGTAAAC
TTTTCTCCCACCTCCCTCTCTCTCATATAAA-CCCCCACTGCAGATACGAACAGACACACACCACCGCAAGTCCAAGGCG
GAGCGGCAAGCAAAGCCA----------------ATACTCCTTCCCTCGTCGTGCACCCACTGCACGCGACCATGGCGCC
TGCTCGGGAGCTCCAAGAAACCTCGTCGTCCTCGTCGTCATCGACGTCGTCGTATACGACCAGCTCCACGTCCATGTCGT
GCTCGTCCACCGTCACGGACTCCTCGTCGTGTCCCTCCTCGCCGGCGAGCGCCGCCAATGCCGTGAAGGCGGCGCCGCGC
AAGCGGCAGCTGGACGAGGGAGAGGGAGGGCAGGAGGAGACGGAGGAGGGGAAGACGACGACGACGGCGACGACGACGAA
GAAGAGCAAGCGTAGCAGCGACGGGAAGCACCCGGTGTACCGCGGCGTGCGGATGCGGGCGTGGGGCAAGTGGGTGTCGG
AGATCCGCGAGCCACGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCCCCACCGCCGAGATGGCCGCGCGCGCGCACGAC
GTCGCCGCGCTCGCCATCAAGGGCGCCCGGTCCGCGCACCTCAACTTCCCGGAGCTCGCCGACGTCCTCCCGCGCGCCGC
CTCGCCGGCGCCCAAGGACGTGCAGGCCGCCGCCGCATTGGCCGCCGCGTTCACGTCTTCGCCGCCGCCCTTGTCCACGG
ATCAGTCGGAGTCGGAAGAGGGCCTCATCCAAGAGGAGACCGTCAAGAACGACGCCGGCGCGGGCGCCACCGCGCCGCCG
GAGTCTGCCGCCACGGCTACGAGCTGCGGCGGCGCCGCTGAGCAGGCGGAGGAGGAGGAGCTGCGGCAGCTGTTCGACCT
GCCGGACCTGCTCATCGACATCGAGGACGGATTCGGATTCTCCACCATGTGGGCTCCGCTCCCCGACGTCGAGGAGGTCA
ATGCAGACCTCCGGCTCGAGGAGCCGCTCCTTTGGGAGTAGCAGATGCTTGCGAAGACTAGATGATCAAATATACTAGGA
GTACTTAATCGCTAGTGTAATCTCTTCTTTGCCTTTCTTTTTTTTACT---------ACTAGCGTTTTTTTTAGTTTGCC
TTTTTTCTTTTACTTTGCTGGTTTA--ATAAGCACAAGGGAGTACGTAGTGATATACATATGC-AAAAAAAGTTTGCTAC
TACCACTACTACATGTTACCTGAGAGAGTTAATTATCAGTACTATTACCACATAGTAATGTGTGAATCCTAGTGGTTTGA
CCTTGCCATCAGATTATTGGGTGATTGTACTGTAT------------TCGTTATGCTTGGAATACTCGTTGTACTGCATT
GAGTCTCCCCAGAAAAAAAGAGAGTATAAATTTGAGTGTCATGCCATGGAGACTGAGATGAGAAGAAGGAATAGAATGCC
AGGAAGCTCGAAGTTAAGAGGCCACTGAAGCTGACTTTGAAAACTTAATCTATTCCACTTCCACCCCTCACTTGTTTATC
AGCAAGTGATGTTGCTCAACAAGAGGTGCTTTGCCACTGCCAGCAATTTCATGTTTCTTTATCAGCATTCAGATCCTGTC
GTAAACACCATGCTGAACTTTATTAGTTTGTTC----AGTGAAGTTGGGAGAAGAAGGAAGCTCTTTTACTATTCAAAAA
CAGCAG-AAAAAAGGGTTAAAAATGTTGATTTGTGGATATGAGGTTGTCTGGCTAGTGTTGGTCTCCCCCATGAT----C
AAGCAAGCAGAG-GCGGTGCAGACAAAAGGTGGCACTCCTCATGTGGCTCCAGTGCAGCATCTCATCATCATCAACTTCT
TCTTCTTCTTCTTCCTCTGGCTTCCCCTGCTTTTTTCTC-CCTTTTGCCATCTGCTTTGGAAAGCTGCTGCTGATCAAGA
CGAGAGAATGAGATTCTTCTTCT---------TCTTTTCCTTGTGGGAGAGAGAGAGGAGTGAGGTTATTTTAAGCATGG
CCATCATTTCCAGTGGGAAAGCTAATGCTCCCACTTACCAAGCATGTGCCGGACAGAGCC
>SNPs
--S-----S----------------------------S--S----S------------------------S---------
-------------------------------------------S-----S------------------------------
----------S--------S-----------S------------------------------------S-----------
-------S---SSSSS----------------------------------------------------------------
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-----S--------------------------------------------------------------------------
------------------------------S------S------------S-S------------S----S---------
-------S--S-----------S--------S-S-SS-----SS-----------S---SSSSSSS--------------
-S-----------------------S---S--------------------------------------------------
--------------------------------S--------SSSSSSSSS------------------------------
----------------------------S--------------------S-----SS-----------------------
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--------------S---------------------------------------------------S----S--------
----S--S-------S-SSSSSSSSS-S--SSSS----------------------------------S-----------
------------------------------S--------------------------------S----------------
------------------------------------------------------------------------S-------
-------------------S--------------------------------------S---------------------
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------------------------------S-----------------------------S-------------------
-------------------------------------------------------------S---------S--------
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----S---------------------------------------------------------------------------
-------------------------------------------------S---------------------SSS--SS--
-------------------------SS-------S---------------------------------------------
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-------------------------S-----------SS-----------------------------------------
---------------------S----S-----------------------------------------------------
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-------S----------------------S-------------------------------------------------
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-----SSSSS--S-----------------S-------------------------------------------------
------------------------------------SSSS----------------------------------------
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>forward_833
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-------------TCTCCCTTGTCCTAGCTCCC-----------------------------------------------
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>reverse_4089
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--------GCAGTGCAGTGCAGACAAAA----------------------------------------------------
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