>input_sequence_67668
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------------------------------------------------CCAAATCCCCCAAGTCTCCATGGCCCCCAGAT
CGGAGCACGCCGGCGGGAGCGCCTCGGGGGCAGCGGCGGCGGCGGCGGCC------GCCGCCCAGAGCCACGGATCCGGG
TTCGACTCCATGGACCCCTTCTTCCACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAA
GCTGCCGTCCAACCTGGCGCTCCCGTCCCCGATGGTCGTCTTCTCGCTCATCCTGCTCACCTACTTTTCCGTCGTCTCCG
GCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCTCCCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTC
GTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGT
CGGGGTCATCCTCCTCGACCTGGCCGTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCG
CCGCCATCGTCATCGCCTACGCCATGGCCATGCTCTTCCTCCGCATCAAGATACCCGGGTACCTATGGTGAGGCCGAAAA
ATCATCTCCCC-ACTTCGTTATGCCCAGATCCGTCGTCAGATCTGAGGAT---GCTAAGCTGTTGCTGATGACTC---TA
GTGTACAATTTAAGTTATGTTACCATAGGATGTTGGGTTGCACTCAAATTTCAGTTGGTGATCTGAGGACTATCTATTTC
GAATGATACTAAGCTGTTGC------------------------------------------TATGAAGATCCATTTTCT
GTTTGCTGTATTTGTGCAATTTCAGAACATCTCTAATAACCAGTTTGTGATATG--------------------------
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>chr7A_1_TraesCS7A01G095500
ATCGCTAGGACAGGAAGAGATCGATCGCTAGGATTCCAAAAAACAAATTGATTGCTAGGTCTGATGTGATCAATTAAAAG
AGTGGAACGGAAAGCTTACCTTTTTGATAAGAAAAAAAAGAAGAGATCTCAGCCATCAATCTTTATAGTTAAAATAAAAT
TAACGAATATAAACGAGATGACATATGGAGAACTATGAAAGCTTCCATCCTTTAATATTAGATATAGATATATAGATATA
AAAAAGGAAGTAAAAGAGCAGTTTCACCATGGAGTAGGCTTTGGCCTTTGACTTTGAGGCTCTTGGTACAGGACATCGAG
GCCATGTATTGTCATGTACGTGTCACATTGAATAAATTTCATGTCTGTGTCATGTGCCCAAACATTGTGTTGCTCAAAAA
TTCGCGCCAACTATAGTTAATTTGATTATTATCGAAACCGCACCATAAATATGTATAAAATCATATAAATCAAAGTATAA
AAACCGTATAAACCGAACCGAATCAAACCAAAGAAACCAAACGCACACCCTGACCTCAACGGATCCACCTTCTCCCTCTT
CTTGTATTTCTCTCTCTTGCTTTACTGAATCACAACCAATCCTACGAGCTAGAGTGCATGTTGTGCTGCTCATCTTTCTT
TCTTTTCGAGTGCTCTCTCTTGCATCTCCTTCTTCTTTGCTTTTCTGTCAGGGAGGAGGGAGTCTCCTCTGCAAGCATCC
GCTTTTCTCTGCAAGCTGCATACTAAGCGGTCCATGGACCATCTGAACCTACGTGGAGGCTGCGGCACCGGTCCAGCGCT
GGGCATTGCCCTTATAAGGGCGAGTGTACGTGCGTATGTATAATAAGCACTAAAAAAACACTTTTCTCCTTTGGTAGTCA
CCTCTGCTCTAAGATTGTGTTTTGCTTTAAGATATGTGCGATCCGTCCCTAAAAAAAACAATACGGGGTATGTGCGATCC
GGCTTCATCCCCCCACTGGCCATCCCCG--------CACTCACCAGACCCAAATCCCCCAAGTCTCCATGGCCCCCAGAT
CGGAGCACGCCGGCGGGAGCGCCTCGGGGGCAGCGGCGGCGGCGGCGGCC------GCCGCCCAGAGCCACGGATCCGGG
TTCGACTCCATGGACCCCTTCTTCCACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAA
GCTGCCGTCCAACCTGGCGCTCCCGTCCCCGATGGTCGTCTTCTCGCTCATCCTGCTCACCTACTTTTCCGTCGTCTCCG
GCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCTCCCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTC
GTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGT
CGGGGTCATCCTCCTCGACCTGGCCGTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCG
CCGCCATCGTCATCGCCTACGCCATGGCCATGCTCTTCCTCCGCATCAAGATACCCGGGTACCTATGGTGAGGCCGAAAA
ATCATCTCCCC-ACTTCGTTATGCCCAGATCCGTCGTCAGATCTGAGGAT---GCTAAGCTGTTGCTGATGACTC---TA
GTGTACAATTTAAGTTATGTTACCATAGGATGTTGGGTTGCACTCAAATTTCAGTTGGTGATCTGAGGACTATCTATTTC
GAATGATACTAAGCTGTTGC------------------------------------------TATGAAGATCCATTTTCT
GTTTGCTGTATTTGTGCAATTTCAGAACATCTCTAATAACCAGTTTGTGATATGTGGTAATCTTAATCTAGGTACCAATG
CT-----------TTATCATTTCAATCTCAAGCTTCATGTTCAATTGACTGAAAACTTAGGTGGGTTTGTCTCAAGCTTC
ATGTTCAATTGACCCAATACTTCACTGGAGAATATATTTTATACACAGTTTGCTAATTTGTGTACTTTTGTCACTTGAGT
TTGCATCATATTGTGTTTGCCATTGGAAGAATATATAAGTTTTGTTCAATGCCACGTTAAACTCTAATTGGCAC-AAAAC
ACTACTATACCCTTATTTGATGGCATAGCCTGGTTGGAGCCAAGGGCTTGTGAGCATGAGCAGATAAGG-----------
GCTTGTGTAGGCTAATGCTCTGGTCGCAATTTTTGTGTTTACCAAATCAAGTCGTCACCATTGAGTAATCATCAAACATG
GGTTGTTATCCTTTCCTAGCATTGTCCATTGCAAGTGCCATCAAGCAACATTAATGTTTGTTTCTGATGGCAAATACATA
ACTACATGCTAGCTTAGATGGCAGATTTAAAATTTCACAAAGTCGGAGTGGCATGTATGATACTCCCCATAAATCAGTTA
TGATACTACCGTACAAGTGTAAGAATAGTGTACATGGTCCGTTCTAATAAGTCTAAGGATAAGTGAGTAGTGTACATGAT
TTTGTCTAATTTCCTGAAAGATAAAATGTTCTAAAAGGCAGCCTAGTTTCGGCCTTGCCTAGCTAGCATAATGCATGACA
AATGGATGAGATCAGGACAAACAAGTAAGTCATCTAGAAGCCCTAGGTACAGGGCTGCTGCCTGCTTAGTGTGTTGGTCC
TTCTTGAACAGTGTAAAGAAGGCAAGTGAAGATATCTATTTTGAACTCATTTGTACAAAAATA------GAACGTAAGAG
ATATGTTATGTGGTTCTTGACTTGTGAGTTATGGATTTGAAGAGTCAATGAATTTCTGTTGATTCGTCTGACAATA----
--------------------------GTGAGCACACAATTGGGCAACTGCTAAAGTTGTTAAATGCAAATTAT
>chr7D_951
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----------------------------------------------------------------------TGTGCGATCC
GGCTTCATCCCCACGCTGACCATCCCCCACGGCCCACACACACCAGACCCAAATCCCCCGAGTCTCCATGGCTCCCAGAT
CGGAGCACGCCGGCGGGAGCGCCTCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGCCCAGAGCCACGGATCCGGG
TTCGACTCCATGGACCCCTTCTTCCACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAA
GCTGCCGTCCAACCTGGCGCTCCCGTCCCCGATGGTCGTCTTCTCGCTCATCCTGCTCACCTACTTCGCCGTCGTCTCCG
GCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCTCCCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTC
GTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGT
CGGGGTCATCCTCCTCGACCTGGCGGTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCG
CCGCCATCGTCATCGCCTACGCCATGGCCATGCTCTTCCTCCGCATCAAGATACCCGGATACTTATGGTGAGGCCGAAAA
TTCATCTCCCCCACTTCGTTATG-CCAGATCCGTCATCAGATCTGAGGAT---ACTAAGCTGTTGCTGATGACTC---TA
GTGTACAATTTAAGTTATGTTACCATAGGATGTTGGGTTGCACTCAAATTTCAGTTGGTGATCTGAGGATTATCTATTTC
AAATGATAGTAAACTGTTATGTGTTCCTTTTTTCTGAAATGGTGATTGCATGATAATGCTGTTATGAAGATCCATTTTCT
GTTTGCTGTATTTGTGAAATTTCAGAAAATCGCTAATAACG-GTCTGTGATATGTGGTAATCTTAATCTAGGGACCAATG
CTGTTTATTTGTTTTCTCGTTTCAATCTCAAGCTTCATGTTCAGTTAACTGAAAACTTAGATGGGATTGTCTCATGATG-
-------------CCAATACTTCACTGGAAAATATATTTTATACACAGTTTGCTAATTTGTGCACTT--GTCACTTGATT
TTGCATCATATTGTGTTCGCCATTGGAAGAATATATAAGATTTGTTCAATGCCACGTTAAATTCTAATTGGCGCAAAAAC
ACTACTATACCCTTATTTTATGGTTAGA---------AGCTAAGGGCTTGTGGGCATGGGCAGATAAGGCGATCGGCATT
GCTTGTGTAGGCTACTGCTTTGGTCGTAATTTTTGTGTTTACCAAATCAAGTCGTCACCATTGAGTAACCATCAAACAAG
GGTTGTCATCCTTTCCTGGCATTATCCATTGCAAGTGCCATCAAGCAACAATAATGTTCGTTTCTGATGGCAAATACATA
ACTACATGCCAGCTTAGATGGCAGATTTAAAATTTCACAAAGTCGGAGTGGCATGTATGATACTCCCCATAACTCAGTTA
TGATACAACCGTACAGGTGTAAGAATAGTGTACTAGGTCCGTAGTAATAAGCCTAAGGATAAGTGAGTGATGTAGATGAT
TTTGTCTAATTTACTGAAAGATGAAGTGTTCTAAAAGGCGGCCTAGTTTCGGCCTT-CCTAGATAGCATAATGGATGACA
AATGGATGAGATCAGGATAAAC----AAGTCATCTAGAAGCCCTAGGTACAAGGCTGCTGCCCGCTTAGTGTGTAGGTCC
TTCTTGAACAGTGTAAAGAAGGCAAGTGAAGATATCTATTTTGAACTCATTTGTACAAAAATACTCGTAGAACATAAGAG
ATATGTAATGTGCTTCTTGACTTGTGAGCTATTGACTTGAAGAGTCGATGAATTTCTGTTGATTCGTCTGACAATACAAT
ATATAACCTACTGTATCTGTGCTTAAGTGAGCACACAATCTGGCAACTGCTAAAGTTGTTAAATGCAAATTAT
>chr4A_951
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----------------------------------------------------------------------TGTGCGATCC
GGCTTCATCACCA--CTGACCATCCCCCACGGCCCACACACACCAGACCCAAATCCCCCAAGTCTCCATGGCTCCCAGAT
CGGAGCACGCCGGCGGGAGCGCCTCGGCGGCAGCGGCGGCGGCGGCC------GCGGCCGCCCAGAGCCACGGATCCGGG
CTCGACTCCATGGACCCCTTCTTCCACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAA
GCTGCCGTCCAACCTGGCGCTCCCGTCCCCGATGGTCGTCTTCTCCCTCATCCTGTTCACCTACTTCGCCGTCGTCTCCG
GCCTCGTCTACGACGTCATCGTCGAGCCCCCGGGCATCGGCAGCTCGCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTC
GTCTTCCTCCCAGGCCGCGTCAACGGCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGT
CGGGGTCATCCTCCTCGATCTGGCGGTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCG
CCGCCATCGTCATCGCCTACGCCATGGCCATGCTCTTCCTCCGCATCAAGATACCCGGATACCTATGGTGAGGCCTAGAA
ATCATCTCCCT-ACTTCATTATG-CCAGATCCGCCATCAGATCTGAGGATACTACTAAGCTGTTGCTCATGACTCTAGTA
GTGTACAATTTAAGTTATGTTACCTTAGGATGTTGGGTCGCACTCAAATTTCAGTCGGTGATCAGAGGATTATCTATTTC
AAATGATAGTAAACTGTTG-------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
------------S-S---S--------S-----------S--------------------------------S-------
---------------------------S---------------------S------------------------------
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------------------------------------------------------------------SS------------
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------------------------S-------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------S-----------S-----------------S--------------------------
---------------------------------------------------------------------S----------
S-------S---S------S------------------------------------------------------------
----------------S----------S---S--------SS--S---------------------------S-------
---------------S--S------------------------S--S-------------S----S--------S-S-SS
SSSSSSSSSSSSS----------------S--------------------------------S----SS---------S-
-----------------S---------------------S---------------------S----------S-------
------------------S----SSSSSSSSSSSSSS---S-----------S-----S---------------------
--------------S----S------S-----------------------------------------S---------S-
------S----------S-----S--------------------------S-------S---------------------
---------S--------------------------------------------------------------S-------
------S--------S-----------------SS-------SS-------S----------------SS----S-----
------------S---------S--S-------------S----------------S-----S----------S------
-----------------S----SSSS-------------------------S----------S-----------S-----
-------------------------------------------------------------------------S------
------S-----S---------------S---S--S----------S---------------------------------
---------------------------------------SS--------------------------------
>forward_409
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---------------------------------------------------------------------TTGCTCAAAAA
TTCGCGCCA-----------------------------------------------------------------------
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>reverse_2184
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-----------------------CATAGCCTGGTTGGAGCCAA-------------------------------------
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