>input_sequence_67662
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-----------------------------------------------------------------------ACCCTCACC
AAGTTCAACA--GTCCCACCATACATCCATATCTATCGCCGCCAAGAATCGCCGAGAAATCCAG----GAGAGCCAGTA-
--GCTAGCAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGCCGGCGTTGTCGACGGCG---------GG
GAGGACGAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCACGCCGGCTCCGGCCAAGAAGG
AGAAGAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAAC
AAGGTGGACGGCCCGGCGCCCTCCGCCGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCGCCGGCAAGAAGCCCGC
GGCCGACAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAGGCTGAACCAGCCCGCCTAA
TACGTAGGCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACTCCATGAAAAACATCGCAGAG
ATCTGCATATATGTACGTACACGCGGTGTGACTACTCAAACGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTT
CACACAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTGCATGTTGTATTGTACCCATGTTAAGC-TTGCTTTGCT
AAGATCCCAATACTGACAACCTTTATATGTACCCATGTCCG-----------------------TACATATATCTAAATC
ATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAGCGATTAACAAA-CTGAAAAAA---------------
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>chr5B_1_TraesCS5B01G501800
ACAAATTCTGCTTAAACTTTCACAATCTTTTAAAAAAATAGCTTAACAGTTAACGGTATTTCACATAATTTCCTGAGGGT
AGGGTGCTATGCCCCCTGGGCCCTAGCTAGTGAAGCTCCACCCCTGGGCC-----CTAGCATGAATTCCCAGCCAAGCAT
TGCTGCTATAC----------CCATGTAGCCATGCGATTGTTCTCCAATGTATTGGAGAGCCAACCATGGCATGTGACAA
TTTTTATTTTTGCCCATAACTCGAACCTACCACCGACATTTACTATGCTCAAATTTGCTCTTGCTCAAGTATCCTTGTAG
AAATGCCTTTGTGTGTTGTTTCTATCCGGTTAAAGGTTTTTGACCATCTATGAGACATTCTCTGGATGTTTTTTACCCCT
CTCTGCATATGCCACTTACATGTGAGCTCCCAGAAAAATGAAAAGGATTAAAATCTCTCCCAACCCGCTCTCTCTCTCTC
TCTCACTTACATGTGGGGCCCCCATAATAAAAAGAAAA-GATTAAAATCTCTCCCAACCCCCTCTCCCCCTCTCGCTTAC
ACGTGGGCCCATGTCAAAGCTTGCCTAGTCAACAAGAACAGGTCAAAGGGGCCCACATCTCCATTTCACAGCTGGATTTG
TGTTTTTTGTTCATGATTCAGTCGTGTTTGATTGAACTTTGGACGTGCGGATTGGTTTGTATTGCATTTATATTCCCGCA
AAAAATATTGCATGCATATACG----------------------------------------------------------
----TCGTCATTTGGCTTGGGATCTTTTTGTGACTTTTTTACGGCA----------------------------------
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--------------------------------------AAGAGACGAAGCAACGCTGGCCCTACAACCGAGTCGATCCCT
GCCACTCGCGCTTGTGCCGAGC-------------CCGCGCCGACCTCTCGCGGGACGCACGGCCAGTGCA---------
----------CCCCACCCGCCGGTGGCTGGCACCGTGGCACGCATACGTAGGTGC---------GGATAAGCCGCCTGTG
GCCACCATCCCCTCCCGATCGCCTCCCTGCCTCCCACGCATATATGGCCACCCGCCCGCCTCCCGATCGCCACCCTCACC
AAGTTCAACA--GTCCCACCATACATCCATATCTATCGCCGCCAAGAATCGCCGAGAAATCCAG----GAGAGCCAGTA-
--GCTAGCAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGCCGGCGTTGTCGACGGCG---------GG
GAGGACGAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCACGCCGGCTCCGGCCAAGAAGG
AGAAGAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAAC
AAGGTGGACGGCCCGGCGCCCTCCGCCGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCGCCGGCAAGAAGCCCGC
GGCCGACAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAGGCTGAACCAGCCCGCCTAA
TACGTAGGCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACTCCATGAAAAACATCGCAGAG
ATCTGCATATATGTACGTACACGCGGTGTGACTACTCAAACGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTT
CACACAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTGCATGTTGTATTGTACCCATGTTAAGC-TTGCTTTGCT
AAGATCCCAATACTGACAACCTTTATATGTACCCATGTCCG-----------------------TACATATATCTAAATC
ATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAGCGATTAACAAA-CTGAAAAAATCAGAGAGAGGAACA
GAGGAAGCTCTTGGGTCACACCAACAACAAATTCCCAGTGTTGAAATGGCCAAATATTTTC----CCTTTATTTTGTATG
GTTGTCCTGCTCAACTTCTTGAGCAGAGATCAACAACTGGATAGAGTCTGTGGCAAGTCTTGCAAACTGCCTTCTGCATG
CATGCTTGACACAGTTATGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAATCCCGATCGACTCGACAAGGT
CAAACGGACTCTGATCATATATCTGTACAGTTGATTGATAGGAGGCCTTGCCGTGC-AACCTTTTCGTGTTACAGTCACG
CCATGCAAATGAGCATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCGAAAAGACCTGCAGATGTTGAGA
TCGAGTAGAAAACCATATCAATCAGGGATACTCTTGGGGTAGCGAGGTAACATGCGGCATAACTCAACACTTGATGAAAG
AAAATACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAGCAAGACACCAGCGACCGAAA
TGGGTATCTTGTTTAGTGAGCCAACAAGACTAAAAAGGAGA-GGAATGATTATCAACATGTCA--AGAACTTTGATGGTG
TTACAGTTATTGTAATACTTTTTTGTCATGCAAGCATTTTTTTTTTGCGAAATGCAAGCATTTCCGTGGGCACTTTGAAG
AAGGAATTGAGTTAGTAGTA-TCATCTCACCTGTAAGTTGTTGGGCCAGTCTCCTGTAAAAACCACACGGATGAGAAGCT
GATCGCTAGTCCTAACAACCCGCTGGCTGTGGCAAAAACCCAGAACATGGGCTCTCTAATAACTTCGCTGCAGATGACAT
GAAGAAGAACACATTAAGGGTTAGTGCAAGGGCAGAGCCCCAAGCCATCTTTCGAGGAAAGAAAATAAATATTAATGGGT
AATACTGGAAAACTCTTTGATTTTTCCATTTCAT
>chr5D_1
ACAAATTCTGCTTAAACTTTGACAATCTTTTAAGAAATTAGCTTAACAGTTAACGGTATTTCACATAATTTCTCGAGGGT
AGGAGGCTATGCCCCCTTGGCCCTAG----TGAAGCTCCGCCACTGATCAGAATGCTAGCATGAATTCCCAGCCAAGCAT
AGCGCAACGTTGCCGCTATAGCCATGTAGCCATGGGATTGTTCTCCAATGCATTGGAGAGC-------------------
--------------------------CTACCACTAACATTTATTATGCTCAAATTTGCTCTTTCTCAAGTATCCTTGTAG
AAATGCCTTTGCGTGTTCTTTACATCCGGTTAAAGGGTTTTGATCGTCTATGAGACATTCTTTGGGCGC-TTTTACCCCT
CTCTGCATATGTCACTTACATGTA--------------------------------------------------------
----------------GGGCCCCGTAATAAAAAGAAAAGGATTAAAATCTTTCCCAACCCCCTCTCCCTCTCTCACTTAC
ATGTGGGTCCAGGTCAAAGCTTGCCGAGTCAACAAGGGCATGCCAAAGGGGCCCATATGTCCATTCAT-AGCTGGATTTG
TGTTTTTGGTTCATGAGTCAGTCGTGTTTTA---AACTTTGGATGTGTGGATT-GTTTGTATTGCACATATATTCCCGCA
AACAAAAAAAATCTTGCATCTGTATCGTCATTTGTCTTGGGATCTTTCTGTGAGTTTTTTTCTTTTACGGTATAAGAGTC
TGTATCGTCATTTGTTTTGGGATCTTTTTTTACTGGTACTTCCTCCATTCCTAAATATAAGTCTTTTTAGAGATTCTACT
ATGGACTATATACGGAGCAAAATGAGTGAATCTACACTAAAATATGTCTATATACATCCATATGTACTAATTCATAGTGG
AATCTTTAAAAAGACTTATACTTTGGAACGGAGGGAGTAAGAGACGAAGCAGCGCTGGCCCTACAACCGAATTGATCCC-
---ACTTGCGCTTGTGGCAAGCCCACGTTGAAGAGCCACGCCGACCTCTCGCGGGACGCACGGCCAGGGCCAGTGCACAC
TGCACCCCACC------CGCCGGTGGC--------TGGCACCGGCACGCACA--CGCGTGGTGAGGATAAGCCGCCTGTG
GCCACCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCACCCGCCGGCCTCCCGATCGCCACCCTCACC
AAGTTCAACA--GTCCCACCATACATACATT----TCGCCGCCAAGAATATCCAAGGGATCCAACCAAGAGAGCTAGTA-
--GTTAACAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGC------------CGGCG---------GG
GAGGACGAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCCACGAGGGGCACGCCGGCTCCGGCCAAGAAGG
AGAAGAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAAC
AAGGTGGACGGCCCGGCGCCCTCCGCCGGTGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCTCCGGCAAGAAGCCCGC
GGCCGGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAGGCTGAACCAGCCCGCCTAA
TACGTAGGCGCGCGCTTGGGTGCGTGCTTCCATCTCATAGCTCGATTTATTGCTGTAACTCCATGAAAAACATCGCAGAG
ATTTGCATATATGTA----TATGCGGTGTGACTACTCAAATGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTT
CACACAACTTCTGGAGTAATTTCTCTCATGT--------TGTGA---------TGTACCCATGTTAAGC-TTGCTTTGCT
AAGATCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAAGTATATATATATATATATCTAGATC
ATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAACGATTAACAAAACTGAAAATATCAGAGAGAGAAACA
GAGGAAGCTCTTGGGTCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAGATCTTTTCCACTCCTTTATTTTGTATG
GTTGTCCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAGTTTGTGGCAAGTCCTGCAAACTGCCTTCTGCATG
CTTGCTTGACACAGTTACGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAATCCCGATCGACTCGTCAAGTT
CAAACGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAATCTTTTCGTGTTACAGTCACG
CCGGGAGAATGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAAAAGGCCTGCAGATGTTAAGA
TCGAGTAGAAACATATATCAATCAGAGATACTCTTGGGGTAGCGAGGTAACATGCAACATAACTCAACACTTGATGAAAG
AAAATACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAGCAAGACACCAGCGACCGAAA
TGGGTATCTTGTTTAGTGAGCCAACAAGGCTGAGAAAAGGAGAAAATGATTATCAACATGTGAATAGAACTTTGATGGTG
TTACAGTTAGTGTGATACTTTTTT-C-------------------------ATGCAAACATTTCTGTGGGCACATTGAAG
AAGGAATTGAGTTAGTAGTAGTCATCTCACCTGTAAGTTGTTGGGCCAGTCTCCTGTAAAAACCACACGGATGAGAAGCT
GATCGCTAGTCCTAACAATCCACTGGCGGTCGCAAAAAACCAGAACATGGGCTCTCTGATAACTTCGCTGCAGATGGCAT
GAGAAAACAC----------------------------------------------------------------------
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>chr5A_727
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----TCGTCATTTGCTTTGGGATCTTTTTTTACTGGTAAGAGAC------------------------------------
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-----------------------------------------AGACGAAGCAACGCTGGCCCTACAACCGAATTGATCCC-
---ACTTGCGCTTGTGCCGAGC-------------CCACGCTGACCTCTCGCGGGACGCACGGCCAGTGCA---------
----------C------TGCCGATGGC--------TGGCACGCACACGTAGCTGCGCGTGGTGAGGATAAGCCGCCTGTG
GCCACCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCG-----------CCCGATCGCCACCCTCACC
AAGTTCAACACAGTCCCACCATACATACATT----TCGCCGCCAAGAATCGCCAAGAAATCCAC----GAGAGCCACCTA
GCGTTAGCAATGGCATCGGTGGGGTTCGGCAGCAGCGTGGCGGCAGTGGCGC------------CGGCGTCGTCGGCGGG
GAGGAGTAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCACGCCGGCTCCGGCCAAGAAGG
AGAAGAGCATCCTCGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAAC
AAGGTGGACGGCCCGGCTCCGTCCACGGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCTCCGGCAAGAAGCCCGC
GGCCGGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTGAACTACATAAGCACGT----
-------GCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACTCCATGGAAAACATCGCAGAG
ATCTGCATATATGTA----CACGCGGTGTAACTACTCAAATGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTT
CACACAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTCA---------TATACCCATGTTAAGCTTTGCTTTGCT
AAGATCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAACTAGTATATACGG-ATATCTAGATC
ATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAATGATTAAGAAACTGAAAAATATC----AGAGGAACA
GAGGAAGCTCTTGGGGCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAAATCTTTTC----CCTTTATTTTGTATG
GTTGTTCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAAGCTGTGACAAGTCCTGCAAACTGCCTTCTGCATG
-----------CAGTTATGAAACAAATCCGGGAAAGAATAAACAGAATGTTTCACGAAATCCCAATCGACTCGACAAGTT
CAAACGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAATATTTTCGTGTTACAGTCGCG
CCAGGAGAGTGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAAAAGACCTGCAGATGTTAAGA
TCAAGTACAGAGATGCATCAGAGGTTGC-ACTCATAGGGTAGCAAGGCAGCATGTTCATAACCCAGTGG--TGATGAAAC
AGATTACTTACCAAAAACTATGCTGAACAAATTTTCCACACTAACAGGAACATTGAATAGCAAGACACCAGCAACCGAAA
TGGGTATCTTGTTTAGTGAGCCAACAAGACTGAAAGGGAGA-AAAGTGATTATCAACATGTGAATAGAACTTTGATGGTG
TTACAGTTAGTGTGATACTTTTTTTC-------------------------ATGCAAACATTTATGTGGGCACATTGAAG
AAGGAATTGAGTTAGTAGTA-TCATCTCACCTGTAAGTTGTTGGGCCAGTCTCCTGTAAAAACCACACGGATGAGAAGCT
GATCGCTAGTCCTAACAATCCACTGGCGGTCGCAAAAAACCAGAACATGGGCTCTCTGATAACTTCGCTGCAGATGGCAT
GAGAAAACAC----------------------------------------------------------------------
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>SNPs
--------------------S------------S---S----------------------------------SS------
---SS------------S--------SSSS---------S--S---SS-S------------------------------
S--SSSSSSSS-----------------------S---------------S----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-------S-------------------S-----------------
-----------S-----S---SS-------------S------S-S---------------S---SS-SS----------
-----------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--S----S--------------------------S-----------------S-----S-----
-S-----S---S-------------S----------SS--S-S------------S--S------SSSS-----------
-------S--------S------------S-SSS---------S---S-----S------------SS------------
--S--S-SSSSSSSSSS--SS-----------------------------------------------------------
--------------SS-------------S-SSSSS-SS---SS-S----------------------------------
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----------------------------------------------------------------------S-S------S
SSS---S------------------------------S------------------------------------------
-----------SSSSSS----------SSSSSSSS---------S------S----------------------------
---------------------S----------------------------------S-----------------------
--------------------------S---SSSSS------------------S---------S----------------
---S------------------------------------------------SSSSSSSSSSSS----------------
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---------------------------------------------------------------S----------------
-----S--------------------------------------------------------------------------
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---------------SSSS---------------------S---------------------------------------
-------------------------------------------SSSSSSSSSS---------------------------
-------------S--------------S-SSSSSSS-S-S-------------------------S---------S---
-------------------------------------------S-------------------S----------------
--------------------S-----S---------S------------------S------------------------
------------------------------------S----------------------S--------------------
-S----------------------------------------------------------------------------S-
----------------S-------------SSSS-------------------------S--------------------
---S-SS-----S--------------------------------------------S------------------S---
-----------SSS-----------S-----------------------------SS-----------------------
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-------------------------------S----------SS-----------------S------------------
---------S---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSS------S------S--------S------
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------------------S--S-----S--S-------S------------------S------------------S---
--SS--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_628
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------------------------------------------------GGGCCCACATCTCCATTTCA------------
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>reverse_1857
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----------------GTACACGCGGTGTGACTACT--------------------------------------------
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>forward_694
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----------------------------------AACTTTGGACGTGCGGATTG--------------------------
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>reverse_2851
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--------------------------------------------------AATGCAAGCATTTCCGTGGG----------
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