>input_sequence_67649
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------------------------------------------------------------------ATGGCCTCTGATCG
CGTCGAGGTCGACACCGCCCGCCCTTTCCGGTCCGTGAAGGAGGCGGTCGCGGTGTTCGGGGAGCGCATCCTCGTCGGCG
GGAGCAACTCCAGATACAGCAGCAGTGCGGTTGCCATTGCCGACGCGCATGCCAATGCCACCCCTAACGCCAAGCACGAA
GATAGCAGTAGGAGCAGTACCACCACCCTTTCTCCAAATGCAATGGCAGAGGTAGATGCGGAGCTAGAGCCAGAGGCAAC
GGCAGCTATCGTGCCTATGTACTCCGCGCACTCCTCGCCGTCGTTCACGTCGCCGCGTTCGGCGTACGGCGACGACGGCG
AGCTTGGTTGCCAAGACGACGAGGCCGGGCTCGCGGTCGTGAGCTCCATCAAGAAGCTGGAGGCGGAGGTGGCCGATACG
AGACGGGAGGTGCTGCAGCTCAGGAAGAGGGGCACCGAGATGGAGATGGCCGTGGCCAGCCTCAACGCGCAGCTCCACCG
AGGCCTCTCGAGGCTGGCCGAGATCGAGGCCGACAAGGCTGCTGCGGCGGCGGCACGGCGCAGCATCGGCGGGGACACCG
ACGTGATGGCGGCGGCCATGGTGCGGAGCGAGCGGTGGGCCGAGAAGTCCAGCACGTACAGCAGCGAGTACCTGCCGTCC
TTCAGCCACGCGCTGAGCCTCGGCGAGATCGACGACGACCTGCTCGGCGGCAGGAGGAGGAAGGCGCAGAAGGTGAAGCC
CATCGTGCCCCTCATCGGCGACATCCTCTTCTCCAAGAGTTTCTCCAGGAGGAAGAGCGGCAAGGACAGCGGGGATCTCT
CCAGCGTGTTAGGGTGA---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G215100
AGGCACTGAAGATTACTGACAACTTTGGACCTAGTTCCCCAGAGACCGTGTGACAAATTGCTGGACTCATGAGATCTTGA
TGTTTCATTGGCCAC-ACTCATGAGATCGTGTGACAGATTGCAGGATTTGTGCAACATGCATGGATTGTATCCTTACACA
GTAATTTTAAAGCAGTTACTTTCAGAACCGTCCTTAAATGTTT-GGCAGCAGCGAGTTACTAGTTTTATTGTCAATTTAT
ATAGAGGTAGTGCTAATTAAAATTAGCATTTTTTTAATAGTATCCACTATTGGCAACCACTTATCATTTATTTTTATGAG
AAAC---AGAACTTCAGCATTTGTGACATTCGTTG----AGGGATGCTAG-ATAAGCATCACTCATCTATTGGAAAAGAC
TC--AGAGGCCTATAAGCAAACCTTTTTAGCTTAGCTGCACATCGCATGTTTGAGGGCTAATCCATTCCGTTATTACTTC
AGCAGGTTGCGACATCAACAAAAGGCGCTGTACCTCTGTTGGTGGCATGTAACAATT--TGCCATCTCAATCAGAATCAT
GTCTCTGGACAGTTTGTTACAAGGCTCCTATCCCCTTTGGAAACTGCATGCCTCAACTGAAGAAAAGAACTATCATTTCT
CTCAACCACTCTCATGACACCAGAATTTCTGTTCTGTT--GTATGCTTCTCTGACAGCAGTTGTTACCGTGCTCGTCTCC
TTGGAGCCAGACAGATAGCCAGCCAGCCA----AGAGTGCCCAGAAAGCTAGCATCCCTGCTTCAGCGCCACTCCTGCAG
ATTTTTCTACGCGGGTATTGGGAGTTTTCTGTAAC-----TTAGGTGGCAAGTCATGGTTCTTGCTTGTTGCTACTGGGA
AACTGGTTGCTTGGGGCTAGCTGCTGGTGGCCAGTGTGCTGTTGAAGTGGAAGCAAAGAAACCAGCGGCCACTCCCCTCC
ATATAAACCCCCGGGAGTTTGTGGA-TGTTTCTTGCAGCCCAGATCCTTGAGGAAGCAGCACGTCCATGGCCTCTGATCG
CGTCGAGGTCGACACCGCCCGCCCTTTCCGGTCCGTGAAGGAGGCGGTCGCGGTGTTCGGGGAGCGCATCCTCGTCGGCG
GGAGCAACTCCAGATACAGCAGCAGTGCGGTTGCCATTGCCGACGCGCATGCCAATGCCACCCCTAACGCCAAGCACGAA
GATAGCAGTAGGAGCAGTACCACCACCCTTTCTCCAAATGCAATGGCAGAGGTAGATGCGGAGCTAGAGCCAGAGGCAAC
GGCAGCTATCGTGCCTATGTACTCCGCGCACTCCTCGCCGTCGTTCACGTCGCCGCGTTCGGCGTACGGCGACGACGGCG
AGCTTGGTTGCCAAGACGACGAGGCCGGGCTCGCGGTCGTGAGCTCCATCAAGAAGCTGGAGGCGGAGGTGGCCGATACG
AGACGGGAGGTGCTGCAGCTCAGGAAGAGGGGCACCGAGATGGAGATGGCCGTGGCCAGCCTCAACGCGCAGCTCCACCG
AGGCCTCTCGAGGCTGGCCGAGATCGAGGCCGACAAGGCTGCTGCGGCGGCGGCACGGCGCAGCATCGGCGGGGACACCG
ACGTGATGGCGGCGGCCATGGTGCGGAGCGAGCGGTGGGCCGAGAAGTCCAGCACGTACAGCAGCGAGTACCTGCCGTCC
TTCAGCCACGCGCTGAGCCTCGGCGAGATCGACGACGACCTGCTCGGCGGCAGGAGGAGGAAGGCGCAGAAGGTGAAGCC
CATCGTGCCCCTCATCGGCGACATCCTCTTCTCCAAGAGTTTCTCCAGGAGGAAGAGCGGCAAGGACAGCGGGGATCTCT
CCAGCGTGTTAGGGTGATCATCACTTTTGCTTGCTGCGTGCTCAGGTTGTGGCTGCTTGCGTTGCGTGTGGTTTGGATGG
AGCATGTGCTTTTTTTGGTCCTTTCTTTCTCTTTGGTCGGGGTTTTTCATTTTTCTTT--------GTGCTCTTGTTTGT
GCGAGCCTGTAAATGTAAAATACTGATGAATGCTTGTATCTACTCCCTCTGTCTCAAAATGTAAGAGTGTCAAAAATGAT
GTTATATTTTGGGACAGAGGGAGTGTGTGTTAGGTGATAACTATTCACATAGCTGTTTTCGGCCTTATACAATGCTAGGT
GCCTAAGGAGGTGCTTAAAAAAATAAACTGAATTTTTCTAAAGCACCGTGCTTAATTAAGCGTATGCTCTATACAAATAA
GCACCGGTGTTTAAGAAAAGCCTGGTTTATTTGTTCAAACACCTCTTCTAAGCACCTTGCATTATACAAGGTTTTAGAGT
AGAGTTGTTTGGCTATCGCAGTTTTTTCAAGCCGTTTGCCACGCTTTTTAAATAAAGCCATGTGATCGAACCTGGTCAAT
AAAAACACAACACAACAAATCAGACATGCTAAAAAGCGCAAAAGTGCACAACTAGACTTCCCTAGAATGCCACCAACAAT
AAGCACGTGATATAACCTGAACATGCAAGAAAAATGACACACCGTGCCGCCGTCGCGTCCGCCTTAAAAGAACAAGAGTT
ACCACCGTTAGTGCTGGCAAAAAAGGGTTGCCAGACCAATCAAGGCGACGCTCCAAGAGGGACATGACACCTGCAAGCAT
TATCACCATCGTCAGCATGGACGAAGCTTTCGCTCGATACCTCCTGCACACCTCTCCTAAAGGACCCAAACCACCGTGGT
CCCCAAAGGGGAACAACCCTGTCGAATGGGCACTGGCCCATATAAGGGAAGACCACACCACTCCAATACCACTTGCCACC
ATGCACCTAGCCATTCACATGACCAAAGAATGCAGACAACACCGCTGCAACAGTGCTTGCTAGAG
>chr4D_1
AGGCACTGAAGATTACTGTCAACTTTGGACCTAGTTCCCCAGAGATCGTGTGACAAATTGCTGGACTCATGACATCTTGA
TGTTTCATTGGCTAGTACTCATGAGATCGTGTGACAGATTGCTGGATTTGTGCAAT----ATGGATTCTCTCCTCACACA
ATAAGTTTGAAGCATTTACTTTCAGAACCGTCTTTAAATGTTTTGGCAGCAGCGAGTTACTAGGTTTACTGTCAATTTAT
ATAGAGGTAGTGCTAATTAAAATTAGCATTTTC-TAATAGTATCCACTATTGGCAATCACTTACCATTTATTTTTATGAG
AAAC---ACAGCTTCAGCATTTGTAACCTTCGTATGATCAGGGATGCAAACATAAGCGTCACTCATCTATTGGAAATGAA
GTCTAGCT--------GCACACCTTTTTAGCTTAGCTGCACATCACATGTTTGAGGGCTAATCCATTCCGTTATTACTTC
AGCTGGTTGCGACATCAACAAAAGGCGATGTACCTCCGTTGGTGGCATGTAACATTTGCTGCCATCTCAATCAGAATCAT
GCCTCTGGACAGTTTGTTACAAGGCTCCTATCCCCTTTGGAAACTGCATGCCTCAACTGAAAATAAGAACTATCATTTCT
CTCAACCACTCTCATGACACCAGAATTTCTGCTCTATTGAGTATGTTTCTCTGACAGCAGTTGTTACCGTGCTCGTCTCC
TTGGAGCCAGACAGATAGCCAGCCAGCCAGCCAAGAGTGCCCAGAAAGATAGCGTCCCTGCTTCAGCGCCACTCCTGCAG
ATTTTTCTACGCGAGCATTGGGAGTTTTCTGTAACTTCTTTTAGGTGGCAAGTCATGGTTCTTGCTTGTTGCTACTGGGA
AACTGGTTGCTTGGGGCTAGCTGCTGGTGGCCAGTGTGCTATTGAAGTGGAAGCAAAGAAACCAGCAGCCTCTCACCTCC
ATATAAGCCTCCGGGAGCTTGT-GA-TGTTTCTTGCAGCCCAGATCCTTGAGAAAGCAGCACGTCCATGGCCTCTGATCG
CGTCGAGGTCGACACCGCCCGCCCTTTCCGGTCCGTGAAGGAGGCGGTCGCGGTGTTCGGGGAGCGCATCCTCGTTGGAG
GGAGCAACTCCAGGTACAACGGCAATGCGGTTGCCCTCGCCGATCCGCATGCCAATGCCACCCCTAGTGCCAAGCACGAA
GATAGCAGTAGGAGCAGTACCGCCACCCTTTCTCCAAATGCAATGGCAGAGGTAGATGCGGAGCCAGGGCCAGAGGCAAT
GACAGCTATCGTGCCAATGTACTCCGCGCACTCCTCGCCGTCGTTCACGTCGCCGCGTTCGGCGTATGAAGACGACGGCG
AGCTTGGTTGCCAAGACGAGGAAGCCGGGCTCGCGGTTGTGAGCTCCATCAAGAAGCTGGAGGCGGAGGTGGCCGATACG
AGACGGGAGGTGCTGCAGCTCAGGAAGAGGGGCACCGAGATGGAGATGGCCGTGGCCACCCTCAACGCGCAGCTCCACCG
AGGCCTCTCGAGGCTGGCCGAGATCGAGGCCGACAAGGCTGCGGCGGCGGC---ACGCCGCAGCATCGGTGGAGACACCG
ACGTGATGGCGGCGGCCATGGTGCGGAGCGAGCGGTGGGCCGAGAAGTCCAGCACGTACAGCAGCGAGTACCTGCCGTCC
TTCAGCCACGCGCTGAGCCTCGGCGAGATCGACGACGACCTGCTCGGCGGCAGGAGGAGGAAGGCGCAGAAGGTGAAGCC
CATCGTGCCCCTCATCGGCGACATCCTCTTCTCCAAGAGTTTCTCCAAGAGGAAGAGCGGCAAGGACAGCGGGGATCTCT
CCGGCGTGTTAGGGTGATCATCAC--TTGCTTGCTGCGTGCTCAGGTTGTGGCTGCTTGCGTTGCGTGTGGTTTGGATGG
AGCATGTGCTTTCTTT------------CTCTTTGCTTGGGGTTTTTCATTTTTTTTCTTTTCTTCGTGCTCTTGTTTGT
GCGAGCCTGTAAATGTAAAATACTGATGAATGTTTGTACCTA--------------------------------------
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>chr4B_278
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---------------------------------------GTATCCACTATTGGCAACCACTTATCATTTAGTTTTATGAG
AAACACAACAACCTGAGCATTTGTAACATTCGTACGATCAGGGATGCTAG-ATAAGTGTCACTCATCTATTGGAAAAGAC
TCAAAGAGGCCTAGAAGCAAACCTTTTCAGCTTAGCTGCACATCACATGTTTGAGGGCTAATCCATTCCGTTATTACTTC
AGCAGGTTGCAACATCAACAAAAGGCGCTGTACCTCCGTTGGTGGCATGTAACATTTGC---CATCTCAATCAGAATCAT
GTCTCTGGACAGTTTGTTACAAGGCTCCTATCCCCCTTGGAAACTGCATGCCAGAACTGAAAAAAAGAGCTATCATTTCT
CTCAACCACTCTCATGACACCAGAATTTCTGTTCTGTT--CTGTGCTTCTCTGACAGCAGTTGTTACCGTGCTCGTCTCC
TTGGAGCCAGACAGATAGCCAGCCAGA----CAAGAGTGCCCAGAAAGCTAGCGTCCCTGCTTCAGCGCCACTCCTGCAG
ATTTTTCTACGCGAGCATTGTGAGTTTTCTGTAACTTCTTTTAGGTGGCAAGTCATTGTTCTTGCTTGTTGCTACTGGGA
AACTGGTTGCTTGGGGCTAGCTGCTGGTGGCCAGTGTGCTATTGAAGTGGAAGCAAAGAAACCAGCGGCCTCTCACCTCC
ATATAAACCTCCGGGAGCTTGT-GAATGTTTCTTGCAGCCCAGATCCTTGAGGAGGCAGAACGTCCATGGCATCTGATCG
CGTCGAGGTCGACACCGCCCGCCCTTTCCGGTCCGTGAAGGAGGCGGTGGCGGTGTTCGGGGAGCACATCCTCGTCGGCG
GGAGCAACTCCAGATACAGCAGCAGTGCGGTTGCCATTGCCGATCCGCATGCCAATGCCACCCCTAACGCCAAGCACGAA
GATTGCAGTAGGAGCAGTACCGCCACCCTTTCTCCAGATGCAATGGCAGAGGTAGATGCGGAACCGGTGCATGAGGCAAC
GGCAGCTATTGTGCCTATGTACTCCGCGCACTCCTCGCCGTCGTTCACGTCGCCGCGTTCGGCGTATGGCGACGACGGCG
AGCTTGGTTGCCAAGACGACGAGGCCGGGCTCGCGGTCGTGAGCTCCATCAAGAAGCTGGAGGCGGAGGTGGCCGATACG
AGACGGGAGGTGCTGCAGCTGAGGAAGAGGGGCACCGAGATGGAGATGGCCGTGGCCAGCCTCAACGCGCAGCTCCACCG
AGGCCTCTCGAGGCTGGCCGAGATCGAGGCCGACAAGGCTGCGGCGGCGGC---ACGGTGCAGCATCCGTGGGGACGCCG
ACGTGATGGCGGCGGCCATGGTGCGGAGCGAGCGGTGGGCGGAGAAGTCCAGCACGTACAGCAGCGAGTACCTGCCGTCC
TTCAGCCACGCGCTGAGCCTCGGCGAGATCGACGACGACCTGCTCGGCGGCAGGAGGAGGAAGGCGCAGAAGGTGAAGCC
CATCGTGCCCCTCATCGGTGACATCCTCTTCTCCAAGAGTTTCTCCAAGAGGAAGAGCGGCAAGGACAGCGGGGATCTCT
CCGGCGTGTTAGGGTGATCATCAC--TTGCTTGCTTCGTGCTCAGGTTGTGGCTGCTTGCGTTGCGTGTGGTTTGGATGG
AGCATGTGCTTTCTTTGGTCCTTTCTTTCTCTTTGGTTGGGGTTTTTCATTTTTC--------------------TTTGT
GCGAGCCTGTAAATGTAAAATATTGATGAATGCTTTGTATCTACCCCTTCGTCTCAAAATGGAAGA--------------
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>SNPs
------------------S--------------------------S--------------------------S-------
------------S-S---------------------------S------------SSSSS-------S-S----S-----
S---S---S-----S-----------------S------------------------------S----S-----------
--------------------------------SS----------------------------------------------
--------S---------------S--------SS----------------------S----------------------
-------------S------------------------------S-----------------------------------
------------------------------------S-----------------S-------------------------
-------------------------------------------------------------S------------------
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-----------------------------------------------------S--------------------------
-------------S-S----------------------------------------------------------------
----------------------------------------S-----------------------------S---S-----
---------S-------S----S---------------------------------------------------------
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-------------------------------------------SS-----------------------------------
---------------------S------------------------------------------S--S------------
------------------------------------------------------------------S-------------
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------------------------------------------S--------SSS---------------S----------
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-----------------------------------------------S--------------------------------
--S---------------------SS------------------------------------------------------
------------S------------------------S-------------------S----------------------
--------------------------------------S---SS----SS-----------S----SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_774
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----------------------------------GAGTGCCCAGAAAGCTAGCA--------------------------
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>reverse_2617
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--------------------------------------------------------GAGGGACATGACACCTGCAA----
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