>input_sequence_67636
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--------------------------------------------------------ATGTCATCGTTGCCCGGGGACGAC
GCGGGCAGCGCTCTGCCCAGTGCACGGACTCCCACCACGGTAGTCGACGGCGACGTCGTCTTCTCTGCTGTCGCCCTCCT
CTTCCTCGGCCTCGCCCTCGTCTTCGTTCTTTACCACTACCTCATTGCCAGTCGCCACGGCGTTCGGGGAGGGGCCGGGA
CGGCGAGGAGCGGTCTGCGCCTCGGCGTTGGCGCAGCTTCGGCTTCCGGCGTCGCAAAAGGTGTTGATCTGGTGGTGCTG
CGGGCGCTGCCGGTGACGCTGTACCGTGCGAAGGACTTCGAGGATGCGCTGGAGTGCGCCGTGTGCCTCGCCGAGCTTTC
CGAGGGCGAGGCGGCCAGGTTCTTGCCCAAGTGCGGACACGGCTTCCACGCCGAGTGCGTCGACCTGTGGCTGCATTCCC
ACCCCACCTGTCCGCTCTGCCGCATCGATGTCGACAAGCCGGACGCCTTGCCGCTGGCTCTACCTCCGGTGCGCCCTGAA
CCGGCGAATTACGCTACAAACCTGCCCACCAACGTGCTGTTCTGGGGATCCCCGGACGCGGTCACGACTGGAAGAACAGT
CGGCGGCCCGAGCTCGTCCGCTGGAGCAACGGCGGCGATTGCCATCGAGGTCCCGGAGGCCACGGAATCTCCGTTGGTGC
CGCGTGATGGTGATGCCGGGAAGTCACAGGGTTTGGCGAGGATGAGGTCGATTAAGAGGCTGTGGAGCAGAGGGATTCGT
GAGGTTGGCGCTAGTAGCAGCGCTAGTTCTTGCCACCAAGCA---------------ACTGAGGGCAGCCTTGGTGTTGC
CGCTGCCAATTTCGGCCCGTAG----------------------------------------------------------
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>chr2A_1_TraesCS2A01G311800
GTGTTCTTCCCCCTTTACTTCCTTGTGATGAATTAAGTCTTGCTCTTTAAGGTTTCGTTATGTTGAATTAAGTATTGGAT
TTGAGAACAACATCGAGGATGGTGGGCGCGCGGTCATGGTGATGAGCACACCCCCGCCTACGGCCATAAGGGAATCCGAA
GGGGGTAAAGCGCGGTGGTGGACATTGTCTTTGGATAACGTGGCACAATCCGGGGCGGCAAATCGCAAAACAATCGTGCG
ACGCTCGAGCGACCGGCCCAATTCCTAGCCGGTCGCCCGGCAGGAACCCTTTTTCGCTGTTAAATGTAATTTCATTCGGG
TAAATTTAGTATTTTTGATAGTTTAATTGGTATATTGTGAACGCGGATTTGGTGAACATGGGTGCGCGTGCTCCCTTTAT
GAATAGTAAATTCCAAAAAAATGATAGAAAAAATCAAAAATTTCAGAATATTTTTTTTAATATACATAGTCAACCGGTGT
ACTCGCATATGAGGTTTCACGAAGAAATCACATCCGTGGTAATCTGGGAAAAAATGACAAAATCAAAGCTAATCGAATCT
ATATTAAAAAACACTGTTTAATGAATAGTATGACTGCATTTGTATTTTCTTCACTAAGAATACCATGGATGTCAATACAT
GATGATACTTCACACGTGAGTAGAATGATCGACTAAGGTTCATACCGCAAAAATTTCAGAATTTTTTTAGTTTTTCTAGT
ATTTTTTATGAATTTACTATTCACGTGGGTGCACGCACACCCATGTTCACCTTTGTATTTTTGGTATATTGTCCGCCTAT
ATGTCATCAGCTCAACTCAA------------------------------------------------------------
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---------------------------------AGCACTAATCCTCACCCACGCCAACACACCAACTCCACCAGGTCGGT
CCATGTACCACCACCAAACCCTCTCCAACAAAGCAGCAAAGTATCGAGAGACCAAGCTCATAAATCATA---GCGGGCCA
CTCGGTAGATATACGAAGTTCACTGCTCACGACGAAGTGCGGAGGCGCGCTTCAACATGTCATCGTTGCCCGGGGACGAC
GCGGGCAGCGCTCTGCCCAGTGCACGGACTCCCACCACGGTAGTCGACGGCGACGTCGTCTTCTCTGCTGTCGCCCTCCT
CTTCCTCGGCCTCGCCCTCGTCTTCGTTCTTTACCACTACCTCATTGCCAGTCGCCACGGCGTTCGGGGAGGGGCCGGGA
CGGCGAGGAGCGGTCTGCGCCTCGGCGTTGGCGCAGCTTCGGCTTCCGGCGTCGCAAAAGGTGTTGATCTGGTGGTGCTG
CGGGCGCTGCCGGTGACGCTGTACCGTGCGAAGGACTTCGAGGATGCGCTGGAGTGCGCCGTGTGCCTCGCCGAGCTTTC
CGAGGGCGAGGCGGCCAGGTTCTTGCCCAAGTGCGGACACGGCTTCCACGCCGAGTGCGTCGACCTGTGGCTGCATTCCC
ACCCCACCTGTCCGCTCTGCCGCATCGATGTCGACAAGCCGGACGCCTTGCCGCTGGCTCTACCTCCGGTGCGCCCTGAA
CCGGCGAATTACGCTACAAACCTGCCCACCAACGTGCTGTTCTGGGGATCCCCGGACGCGGTCACGACTGGAAGAACAGT
CGGCGGCCCGAGCTCGTCCGCTGGAGCAACGGCGGCGATTGCCATCGAGGTCCCGGAGGCCACGGAATCTCCGTTGGTGC
CGCGTGATGGTGATGCCGGGAAGTCACAGGGTTTGGCGAGGATGAGGTCGATTAAGAGGCTGTGGAGCAGAGGGATTCGT
GAGGTTGGCGCTAGTAGCAGCGCTAGTTCTTGCCACCAAGCA---------------ACTGAGGGCAGCCTTGGTGTTGC
CGCTGCCAATTTCGGCCCGTAGGGGCCGAAGATACCAGA----------------------------------GACTTGA
GTTTGACTCTCCCGACAAACAGTTTTTGGGTCCTACTCTGATGGAGTACCTGTGGGACCTGATGGCTTGTCTTTCAGTTT
ATCAAATACTCCTATTCCAATGAGGTAGTAAAACATGATTTCATGGTACATGTTCAATGAATGGTTTGATGGCAGAATGG
ATA-----------------------------------------------------------------------------
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CTAAGCCCTAAAGTAAAATAATACTAAGATTATAAGGAAATTCAGACCCAATAGTCTACTCAATTATACTCCCTCAGTCC
CATTAACAAACCCCCAATCTTATTTGGCGCCCGTTGCACCGGTTAAAAGTGTCGGCGCACACCCTCTCCCCCTCGGGCTT
GGCCCATTCACTCTTTTTCTTTCACAAATGTATCACCACGCGCACTTTCCCGTTCAACCCGTGTGGCGCGGGCTGCTCTT
TTTTCCGGTTTCCGGCTAGTTTTGGGGAGCTTCTAGAAACTTTTGACCAGTTTATTTATTTATTTTCTGGACGGTTTTAA
AATGTTTTGCTTTTCTTTTAAATTTCATTTTCCATTTTATTTTCAATTTTTTAAGTACATAAACTGTTTTCAATTTCATG
AACGTTCTTCTTCAAACTCAAGAACTTTTATAAAATCATGAACATTTTCAAATGCATATTTTTTTTAATTTCAAGCACTT
TTTCAAAAAGTTGATTTTTTAAAATTCGTGAACTTTTTGTCAAATGTATGAGATTTTTTCAAATTTCATGAACTTTCTGA
ACTTTTTTCGGTTTCGTGATTTTTTTTTCAAAATTCGTGATCTTTTTGAAATCCGTGAACTTTTTTTGAACCCGTGATTT
TTCCGAACTTTTTGTGAACAATTTTGTTAAATTCCTTTTTTAGCAAATCTCAAAAAATTAATGGCCAACCGGTCAACATT
GGACCGGTCTACCACGATCGAACAATTGTGAACCAGTGACCAGAGAAGCGAAAAAACCACGCATCATGAGCAGCACTCGT
CTGCTGGTTGGCC
>chr2B_781
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------------------------------------------------------------TTGGCATATAATCGGCCTAT
ATGTCATGAGCTCAACTCAAA-----------------------------------------------------------
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-----------------------------------CACTAATCCTCACCCACGCCAACACACCAACTCCACCAGATCGGT
CCATGTACCACTACCAAACCCTCTCCAACAAAGCAGCAAAGTATTGCGAGACCATGCTCATAAATCATA---GCGGGCCA
CACATG-----TACGAAGCTCACTGCTCACGACGAAGTGCGGAGGCGCG-----ACATGTCATCGTTGCCCGGGGACGAC
GCGGGCAGCGTTCTGCCCAGTGCACGGACTCCCACCACGGCAGTCGACGGCGACATCGTCTTCTCCGCCGTCGCCCTCCT
CTTCCTCGGCCTCGCCCTCGCCTTCTTTATTTACCACTACCTCACCTTCAGTCGCCGCGGCGTTCGGGGTAGGGCCGGGA
CGGTGAGGGGCGGTCCGCGCCTCGGCGTTGGCGCAGCTTCTGCTTCCGGCGTCGCAAAAGGCGTCGATCCGGTGGTGCTG
CGGGCGCTGCCGGTGACACTGTACCGTGCCAAGGACTTCGCGGATGCGCTGGAGTGCGCCGTGTGCCTCGCCGAGCTGTC
CGACGGCGAGGCGGCCAGGTTCCTGCCCAAGTGCGGGCACGGGTTCCACGCCGAGTGCGTCGACCTGTGGCTGCATTCCC
ACCCCACCTGCCCGCTCTGCCGCGTCGACGTCGACAAGCCGGACGCCTTGCCGCTGGCTCTACCTCCTCTGCGCCCCGAA
CCGGCGAATTACGCCACAAACCTGCCGACCAACGTGCTGTTCTGGGGATCCCCGGACGCGGTCACGACTGGAAGAACAGT
CGGCGGCCCGAGCTCGTCCGTTGGAGCAGCAGCGTTGATTGTCATCGAAGTCCCGGAGGCCGCGGAATCGGCGTTGGCGC
CGCGTGATGGTGATGCCGGGAAGTCGCACGGTTTGGCGAGGATGAGGTCGATTAAGAGGCTGTGGAGCAGAGGGATTCAA
GAGGTGGGCGCTAGTAGCACTGCTACCTCTTGCCACCAAGCCACTGCTGGTGCTCACACTGAGGACACTCTTGGTGTTGC
CGCTCGCAATTTCGACCCGTAGGGACCGAAGATATGTTGGTCTTTCCACATGAAACATCAATTTAATATCGGGGACTTGA
GTTTGACTCTCCCGACAAACAGTTTTTGGGTCCTACTTTGATGGAGTATGTGCGACACCTGATGGTTTGTCTTTCAGGTT
TACAAATACTCCTATTCCGATGATGTA-----------------------------------------------------
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>chr2D_786
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-----------------------------------------------------------------ATATTGTCCGCCTAT
ATGTCATCAGCTCAACTCAAGGGGAGCCCCTATTTGACGCGTTTTGCGTCAAAGCAGTGGCACACCACATACATAGTGCG
CCATTAATGTTCATATTAGCTATAACCCTTTTCCTAGTAGTGGAAGGCTAGGGTTAGAATCCGGAAACTGTTACCATGTA
AAATATGTGAATTGCACGATGTATTGCTCTTTGTGCATATGCACGTATATATGATGTACAAAAGTGGGTCACGGACCTCA
ACTATATAAGGAACTAGAAGGCGGATCTAATACATAATATGCAAATAACACATATATTCAACATATTGTCCGCCTATATG
TCATCAGCTCAACTCAAGGGGAGCCCCTGTTTGACGCGCTTTGCGTTAAATTGGCGGTCTGACGCACAGGCAGGGACCCG
ACTGGGCCGGCCCATCTAATTCTACCGCGGGACAAAAAACATTGCACGAAAAAGGAAACGCGCGCGTACAAGCAATCGAA
CCAGAGACCAACTGCTTTACTATCACGAACTACTAGCCACTCGACCTAACGAGAACTATTGTTAATAGAGCAGTGCATCC
CTTAAAGAACTAAGCATATACGTATATGGAACCGATATGGTATATATTGTAGCGAACCGAAAATAACTATTGTAGCAAAT
CTGAATTAGTTACTGAGTTGAACGTTTTTTAATGTATATTTTCAAAAGTACCAACATTTATCGAATTCCTGAAGAAACAA
AAAACAGAGACAAGAACTTTTTTGAATATGCGAACATTTTTTTGTACTCCTGAACAAAATTTGGAAATATGAACATTTTT
TCAAACTTGCAAACATTTTTTAAACTCCCGAACAGAATTTGAAGCACGGACATTATTTGATATTTGCGAACAATTTTTGA
AACTACCAGACAACAATTGAAAATATGTAATTTTATTGAAATCACGAACAAATTTTGAAATGGCTACATTTTTTGAAATT
CCCGAACAAAATTTGAAAATTAAAACAATTTTCTAAAAAAATTGAACGATTTTTTAAATGGAAAATTTATTTTGAAATCC
TGAACAAATTTCGAAATGGGAACATTTTTGGAAACTCCCGAACAAAATTTGAGAATACAAACAAATTTCTAAAAAATTTG
AATAATTTTTTAAATGGAAACATCATTTTGAAATCCTAAACAAATCTGAAAAGTTGTCAAATTTTTGAACAAAAGAAAAA
GGAAACATTTTTTAAATGCAACCATTTTTTAGATGTCCGAACAGTTTTGAGAAGGAAATAAACTTGAAAAAAAAGGAAAA
GGAAAGAAAAAGAAAATAGAAGAAACAGAAAAAAACAAAGAAAAAGTAAAAGGAAAAAAGGAAAAATAATAAAAAAGCTA
AAAAACCGAAAAGGAAACAACACAGAAAAAACCCGGTTCAGGGAACCTTCTAGAAGGTTCCCAAAACCGGTTGGCCGCAC
CTGCGTGTAAATCACGAAGTGGGCCGGCCCATATTCGTCGCTAGCATCGCTGCTCCTGTGTGATTGCCCGACATCTTGCC
GCAGCGAGCGGCGAATAGGGATTTCCCAACTCAAGCACTAATCCTCACCCACGCCAACACACCAACTCCACCAGGTCGGT
CCATGTACCACCACCAAACCCTCTGCAACAAAGCAGCAAAGTATCGAGAGACCAAGCTCATAAATCATACTAGCGGGTCA
CTAGGTAGACATACGAAGCTCAGTGCTCACGACGAAGTGCGGAGGCGCGCTTCAACATGTCATCGTTGCCCGGGGACGAC
GCGAGCAGCGCTCTGCCCAGTGCACGGACTCCCACCACAGTAGTCGACGGCGACGTCGTCTTCTCCGCTGTCGCCCTCCT
CTTCCTCGGCCTCGCCCTCGTCTTCGTTCTTTACCACTACCTCATTGCCAGTCGCCACGGCGTTCGGGGTGGGGCCGGGA
CGGCGAGGAGCGGTCCGCGCCTCGGCGTTGGCGCAGCTTCTGCTTCCGGCGTCGCAAAAGGTGTTGAGCTGGTGGTGCTA
CGGGCGCTGCCGGTGACGCTGTACCGTGCGAAGGACTTCGAGGATGCGCTGGAGTGCGCCGTGTGCCTCGCCGAGCTTTC
CGACGGCGAGGCGGCCAGGTTCTTGCCCAAGTGCGGGCACGGCTTCCACGCCGAGTGCGTCGACCTGTGGCTGCATTCCC
ACCCCACCTGCCCGCTCTGCCGCGTCGATGTCGACAAGCCGGACGCCTTGCCGCCGACTCTACCTCCGGTGCGCCCTGAA
CCGGCGAATTACGCTACAAACCTGCCGACCAACGTGCTGTTCTGGGGATCCCCGGACGCGGTCACGACTGGAAGAACAGT
CGGCGGCCCGAGCTCGTCCACTGGAGCAACGGCGGCGATTGCCATCGAGGTCCCGGAGGCCACGGAATCGGAGTTGGTGC
CGCGTGATGGTGATGCCGGGAAGTCACAGGGTTTGGCGAGGATGAGGTCGATTAAGAGACTGTGGAGCAGAGGGATTCGT
GAGGTTGGCGCTAGTAGCAGCGCTAGTTCTTGCCACCAAGCA---------------ACTGAGGGCAGCCTTGGTGTTGC
CGCTGGCAATTTCGGCCCGTAGGGTCGGAAGATATCAGA----------------------------------GACTTGA
GTTTGACTCTCCCGACAAACAGTTTTTGGGTCCTACTCCGATGGAGTACCTGGGGGACCTGATAGCTTGTCTTTCAGTTT
ATCAAATACTCCTATTCCAATGACGTAGTAAAACATGATCTCATTGTACATTTTCAATGAATGGTTTGATGGCAGAATCA
GAATGGATACTAAGAGCATCTCCAACAGGCACCCAAAAACTGCTCCGCGCGCTAAATTTCTGATTTTTTGGCGCCGGAGA
GCTCCAGCAGAAGCTGTAAGCGCGCAAAAAAGGGTTGGGCACGCGCTGAAAAACCTTATCGCGTGCTATAAATTTGAGGC
GTCAGATTGCGCGCTTCACAATTTACACTGCGTGTTTTTTTGTGCGAGCGTTTTTGAGCATCTGGTAAATCAATGTTGGG
TCCGACGTGCTAAAAATGCTACAGTGGCGCGCTAAAACTATTTTAGGGCACGAAACTTTTATGCGCCTGTTGGAGATGCT
CTAAGCCCAAAAG-AAAAGAATACTAAGATTATAAGGAAATTCAGACCCGTTAGTTTGCCGAAT--TACTCCCTCAGTCC
CATTAAGAAACCCCCAATCTTATTTGGCGCCCGCTACGCCGGTTAAAGGTGCCGGCGCACACCCCCTCCTCCTTGGGCTT
GGCCCATTAACTCTTTTTCTTTCGCAAATGTATCGTCGTGCGCACTTTCCTGTTCAACCTGTGTGGCGC-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------------
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---------S--------S-------------------------------------------------------------
-----------------------------------------------------------------S--------------
---------------------------------------------------------------------S----------
---------------S------------------------S---------------------------------------
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---S--------------------------------S-------------------------------------------
----------S------------S--------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------SS---------
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-----S------------------S---------S---------------------------------------------
----------------------------------------------------S---------------------------
-----------------------S---------------S----S------S--------------------------SS
SS------------------------------------------------------------------------------
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--------S----S----S------------------------------SS----S-S-SS---SS--------------
------S--------------------------S-S-S---------S---S------------S----S---S------
--------S--------------S----------SS-SS-----------S--------S---------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_299
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---------------------------------------GCAGGAACCCTTTTTCGCTG---------------------
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>reverse_4036
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-----------------------------------GCACCGGTTAAAAGTGTCGG-------------------------
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