>input_sequence_67632
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------------------------------------------------------ATGCAGATGCAGTCGGCCGACGACGG
CCCGACGGCCCCACCCGTCGCGGCGCTGATCAAGCGGCACCGCCCGTGGGAGGAACTGCAGAACGTGGCCCTCGCGATCA
TCGACCACACCTACGCCGCGGCGCTCCAGATCGTCGGGGGGACGCAGCACGAGGCGGCC------------GGCGTCGTG
AAGCTCTGCCGGCCCATCGACCCTGCGGACCCGGACTCGCCGGTGCTGACCGTCCACGCCGGCGCCGGGCACTGCTGCGT
CGCCTTCAACAACACGCGCGGCGACGCGGAGGCGTTCCTGAGATACACCTGCCCGAGGGGGAAGAGCAGGCCCACCCACT
GCCTCGACCGGGCCACCATCAGCATCTCGCCGGGGACGCTCCACCTGGCCCGCGTCCACGACAGGCATCTCGCCGCCGGG
GGCTACAGGGGCCGCGTCGACGAGGTCGGGAGCAGCCGGCGGGAGCTCGCGATACTCGACGCCATCATGTCCCGCCTGGA
TACCGCGATAGGCGTGGAGCAGGAGCTGCTCCTCAAGGCGAACGCGGCCCAGTGCGGCTCGTCCCCGAAGGTCGCCGAGA
TCAGCGAGGTTTTCAAGGTCCTCAGCGAGATGAGAAGCGAGATGGACCTCGAGGCCGTCATGCGCAGGAGACTCCAGAAG
CGGCGCTGCCAGCCCGAAGAGGTCATCACCGTCGCCCGCCCAGATCAAGATGAGCACGCCGACGCGACCGAGGTGCTGGC
CAAGAGGTTGAAGACGCTGAGAGTACGCTCAAGCTCTAGGGTGCAGCAGATGGATGTGCTCGAACAGACTTGCATGAGTG
GCTCGTATGATAGATGA---------------------------------------------------------------
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>chr1D_1_TraesCS1D01G207300
GCTGGGATTGCATCGGCAACTAGGGCTTCTTTCCAACCCCGTCATGTGACTTACTCGTAATCATATTTTTTAAATGCAGA
TAGGTTCATC-TTATGAAAATTTATGAAAGAAATAACATTCAT-AAAAAGATCCAAAAATGCT-AAAAAATGCACGTAGG
CATGTTCACTGTTTGTGTTAATTTGTTTTTTTTTTCATATTGCTGATATTGCATGTTTTTCTATGTTCAACTGCACTTTC
ACTTTTTTATTATTTATTTTCTTCATTTTGTATTTTTGCAATTGTGACTTTTTGTGTACAATTGCACTTTCACTTCC--T
TTTTTTATATTGGTTGCAATTGTGCACTCTTTTAGTGTAATTGCGTCTTTAATTTTTCTTTCGTTATAAATCTGTACTCG
TTGCAATTGTTTTCTAAATTCACACTCTTTAAGAATTGCGAAGAGGTGCAAAGAGACTTAATCGGTAATTGATATT--TT
TCGCGTTGGATGATATGCGATCATGTGACATGCACGTTTGTGTGAGTTGCGCCAACCTAACCGTTCGACTCGGAAAAGAC
AGTCTCCTAATAAAGATTTGTATAGTTTCAAAATAGAAAGCTTCGC-AAAAAAA-TGGCAGATC-TTTTTCAGGGAAAAG
AAAATGGCAGACCTTTTTTTGATATGAAAGAAAGTGACAGATTTG-TTTTTGTGAGGG----------------------
--------AAAGAAAGTGGCGGATGGAGTCCTAAGGGCCGCGCTAGAACAAAA---------------------------
ACCGCAGCGCCTACGCTTTCAGCCCAGCTTGGCAGGACTGCAAACATTAGTCCAAATTG------------------AAA
TTGTTTTTTTATTCCCAGTAACACGTAACGTAGTTGAGTCGGTGCACCAGCCCAGCCCCGTAGGCGCTACGTCCTCTTGG
AGTTGGAGTCCGCCTCGGCCCCGTCCCCAGCCGTGTATATCAAGGCGAGCACGCAGCGCCGTCGCCCCAACGAGTTTCCC
CGGTGCGTGCTGCAAGGTTTCCGTCCTACAGCGCCCTGCCCTCGCC--------ATGCAGATGCAGTCGGCCGACGACGG
CCCGACGGCCCCACCCGTCGCGGCGCTGATCAAGCGGCACCGCCCGTGGGAGGAACTGCAGAACGTGGCCCTCGCGATCA
TCGACCACACCTACGCCGCGGCGCTCCAGATCGTCGGGGGGACGCAGCACGAGGCGGCC------------GGCGTCGTG
AAGCTCTGCCGGCCCATCGACCCTGCGGACCCGGACTCGCCGGTGCTGACCGTCCACGCCGGCGCCGGGCACTGCTGCGT
CGCCTTCAACAACACGCGCGGCGACGCGGAGGCGTTCCTGAGATACACCTGCCCGAGGGGGAAGAGCAGGCCCACCCACT
GCCTCGACCGGGCCACCATCAGCATCTCGCCGGGGACGCTCCACCTGGCCCGCGTCCACGACAGGCATCTCGCCGCCGGG
GGCTACAGGGGCCGCGTCGACGAGGTCGGGAGCAGCCGGCGGGAGCTCGCGATACTCGACGCCATCATGTCCCGCCTGGA
TACCGCGATAGGCGTGGAGCAGGAGCTGCTCCTCAAGGCGAACGCGGCCCAGTGCGGCTCGTCCCCGAAGGTCGCCGAGA
TCAGCGAGGTTTTCAAGGTCCTCAGCGAGATGAGAAGCGAGATGGACCTCGAGGCCGTCATGCGCAGGAGACTCCAGAAG
CGGCGCTGCCAGCCCGAAGAGGTCATCACCGTCGCCCGCCCAGATCAAGATGAGCACGCCGACGCGACCGAGGTGCTGGC
CAAGAGGTTGAAGACGCTGAGAGTACGCTCAAGCTCTAGGGTGCAGCAGATGGATGTGCTCGAACAGACTTGCATGAGTG
GCTCGTATGATAGATGATATGGCCGCGGCACGTTATTTGCATCTGGCTACTTTTGGC-TTCCGCGATCGATTTTCTACTC
GATTGGGACATTGATTCTGAGCCGCGAGGGGCCTACCACAAGCAAGGAGCTC---TCCAGAGACCAGAGCGGCTCGGTTG
GATCGCAGATGGTGGAGATGCTGCAAGGGAAGAGGCGAGTCCACCTCGAGTCTACGAGCAAAGAATTGACATGGTCGGGT
ATGTCTTAGCAATGTTATCAAGCT--GACATGGTAAACAAGGC----CTGAGGAATTAAGGAAGAATAGAAAGGCACATA
TGTTGCACACCTGTGATCCAAGGAGGACGGAGAAGTATTTCCTTCGATCATGTCATCGCACTTGACAGTTACGACTTAAG
ACAACTTGTAATTTCAAGCAGTACCTCCACTCCTTCGCATCATTGTTGACTGAT--TATATATAGGTCGGTCCACCTTTT
TCTTTCCGTCGAAATCATAGAACAATAGCTCTACGATATATTTTCCATTAATTTTTTTAAGAATATGTATAAATGCC-GT
CTACCCGTCCCAGTCAAATCTCTCATCAAAGGTTATAATATTGGGGTTTGGTCCGGAAAATACACAGGAGCTCACACCCC
TATACGAATATTAAATGTAAAAAATACAAAAAAAAAATACAAAAAATCTGAAATTTGGGGATATCAAACCTGGTTTCTCA
ATCTATTCCTGTGTGAAATTTCATGAAAAGAATACCAGAAAACGTATCTGTGGCGAAGGAAATATTGTCCGAGCAAAAAT
CTGTCCAAACATTTTTTCTATACATAGAATTTGTTTTGTCTTTTTTGCTACGGATACATTTTCTGGTATTTTTTTCACGA
AATTTCACACAGAAGCAGGTCGGGAACCCAGGTTTGATATCGCAAAATCTCAGATTTTTTTTTTCAAATTTCTCGGTATT
TTTTAAATTTAATATTCGTATAGGGGTGTGGAGCACCCAGGTGCTACAAATTCGCTTCCGGTTTGGTTCG
>chr1B_1
GCTGGGATTGCATCGGCAACTAGGGTTTCATCCCAACCCCGTCATGTGACTTACTCCTAATCATATTTTTTAAATGCAGA
TAGGTTCATT-TTACGAAAAATTATCAAAGAAATAATATTCACGAAAAAGATCCAAAAATGCT-AAAAAATGTACATAGG
CATGTTCACTGTTTGTGTTA-------TTTTTTTTCATATTGTTGACATTGCATGTTTT-CTATGTGCAACTGCACTATC
ACTTTTTTGTTATTTATTTTGTATT-------TTTTTGCAATTGTGACTTTTTGTGTACAATTGCACTTTCACTT-C--T
TTTTTTATATTGGTTGCAATTCTGCACTCTTTTAGTGTAATTCCATCTTTAATTTTTCTTTC-TTATATTTTTGTACTCG
TTGCAATTGTTTTTTAAATTCACACTCTTTAAGAACTGCGAAGAGGTGCAAAGATACTTAACCGTTAATTGATATTTTTT
TTGCTTTGCATGATATGTGATCATGTTACATGCACGGTTGTGTGAGTTGCGCAAACCTAACCGTTCGACGCGGAAACGAC
AATCTCCTAACAAAGATTTGTATAATTTCAAAATAGAAAGCTTCACAAAAAAAAGTGTCAGATCTTTTTTTGA-------
--------------------TATACAAAAGAAAGTGGCAGATTTATTTTTTGTGAGGGAAAGAAAGTTTTTTTTTAGGGT
TGTGAGTAAAAGAAAGTGGCAGATGGAGTCCCAAGGGCCGCGCTAGAACAAAAGGGCCTCAAACCCATAGCAGGTACCAA
ACCGCACCTCCCACGCTTTCAGCCCAGCTTGACC-GACTGCAAACAGTAGTCCAAATCG------------------AAA
TTGTTTTTTTCTTCCCAACAACACGTAACGTAGTTGAGTCGGTGCACCAGCCCAGCCCCGTAGGCGCTACGTCCTCTTGG
AGTTGGAGTCCGCCTCGGCCCCGTCCCCCGCCGTGTATATCAAGGCGAGCACGCAGCGCCGTCGCCCCAACGAGTTTCCC
CGGTGCGTGCTCCAAGGTTTTCGTCCTACAGCGCCCTACCCTCGCCCGAAGCACATGCAGATGCAGTCGGCCGACGACGG
CCCGACGGCCCCACCAATCGCGGCGCTGATCAAGCGGCACCGCCCGTGGGAAGAACTGCAGAACGTGGCCCTCGCGATCA
TCGGCCACACCTACGCCGCGGCGCTCCAGATCGTCGGGGGGACGCAGCACGAGGCGGCCGACGTCGATAGTGGCGTCGTG
AAGCTCTGCCGGCCCATCGACCCCGCGGACCCGGACTCGCCGGTGCTGACCGTCCACGCCGGCGCCAGCCACTGCTGCAT
CGCCTTCAACAACACGCGCGGCGACGCGGAGGCGTTCCTGAGATACACCTGCCCGAGGGGGAAGAGCAGGCCCACCCACT
GCCTCGACCGGGTCAGCATCAGCATCTCGCCGGGGACTCTCCACCTGGCCCGCGTCAACGATCGGCATCT---CGCCGGG
GGCTACAGAGGCCGCGTCGACCAAGTTGGGAGCAGCCGGCAGGATCTCGCGATACTCGACGCCATCATGTCGCGCCTCGA
TACCGCGATAGGCGTGCAGCAGGAGCTGCTCCTCAAGGCGAATGCGGCCAAGTGCGGCTCGTCCCCGAAGGTCGCCGAGA
TCAGCGAGGTTTTCAAGGTTCTCCGGGAGATGAGAGACGAGATGGACCTCGAGGCCGTCATGCGCAGGAGACTCCAGAAG
CGGCGCTGCCAGCTCGAAGAGGGC---GCCGTCGCCCGGCCAGACCAAGATGAGCACGCCGACGCGACCGAGGTGCTGAC
GAAGAGGTTGAAGACGCTGAGAGTACGCTCAAGCTCTAGGGTGCAGCAGATGGATGTGCTCGAACAGACTTGCATGAGTG
GCTCGTATGATAGATGACATGGCTGCGGCACGTTACTTGCATCTGGCTACTTTTGGCCTTCCGCGATCGATTTTCTACTC
GATTGGGACATTGATTCTGAGCCGCGAGGAGCCTACTACAAGCAAGGAACTGATGTCCAGAGACCAGAGCGGCTCGGTTG
GATCGCAGATGGTGGAGATGCTGCAAGGGAAGAGGCGAGTCCACCTCGAGTCTACGAGCGAAGAATTGACATGGCCGG--
--------GCAACGTTATCAAGCT--GACATGGTAAACAAGGC----CTGAGTAATTAAGGAAGAATAGAAAGGCATGGT
AAACA------------------AGGACGGAGAAGTATTTCCTTCGATCATGTCATCGCACTTGACAGTTACGACTTAAG
ACAACTCGTAATGTCCAGCAGCACCTCCACTGCTTCGCATCATTCTTGACTGATTATATATATAGGTCGGTCCACCTTTT
T-TTTACGCCGAAACCATAGGACAATAGCTCTA-----------------------------------------------
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>chr1A_1
GCTGGGATTGCATCGGCAACTAGGGTTTCATCCCAACCCCGTCATGTGACTTACTACTAATCATATTTTT-AAATGCAGA
TAGATTCATTTTTACGAAAAATTATCAAAGAAATAATATTCATGCAAAAGATCCAAAATGCTAAAAAAAATGTACGTAGG
CATGTTCACTGTTTGTGTTA-------TTTTTTTTCATGTTGTTGACATTGCATGTTTTTCTATGTGCAACTGCACTTTC
ACTTTTTTGTTATTTATTTTCTTTATTTTGTATTTTTGCAATTGTGACTTTTTGTATAAAATTTCACTTTCACTTTTCTT
TTTTTTATATTGGTTGCAATTGTGCACTCTTTTAGTGTAATTCCGTCTTTATTTTTTCTTTCGTTATATTTTTGTACTCT
TTGCAATTGTTTTCTAAATTCACACTCTTTAGGAACTGCGAAGAGGTGCAAAGAGACTTAATCGGTAATTGATAG--TTT
TTGCTTTGGATGATATGTGATCATGTGACATGCACGGTGGTGTGAGTTGCACCAACCTAACCGTTCGACTCGGAGAAGAC
AGTCTCCTAATAAAGATTTGTATAATTACAAAATAGAAAGCTTCGC-AAAAAAAGTGGCAGATCTTTTTTTAGGGGAAAT
AAAATGGCAGATA--TTTTTTATACGAAAGAAAGTGACAGATTTATCTTTTGTGAGGG----------------------
--------AAAGAAAGTGGCAGATGGAGTCCTAAGGGCCGCGCTAGAACAAAAGGGCCTCAAACCCATA-----------
ACCGCACCGCCTACGCTTTCAGCCCAGCTTGGCC-GACTGCAAACAGTATTCCAAAACTCCAAATCGAGGCCTCTAAAAA
TTGTTCTTTTAGAGGCGGTGCGGTTATGGGTTTGAGGCCCTTTTGTTCTAGCCCAGCTTGGCGGGAC-------------
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----------------------------GATGAGAAGCGAGATGGACCTCGAGGCTGTCATGCGCAGGAGGCTGCAGAAG
CGGCGCTGCCAGCCCGAAGAGGTCATTGCCGTCGCCCGGCTAGACCAAGATGAGCACGCCGATGCGACCGAGGCGCTGGC
CAAGAGGTTGAAGACGCTGAGAGTACGCTCGAGCTCTAGGGTGCAGCAGATGGATGTGCTCGAACAGACTTGCATGAGTG
GCTCGTATGACAGATGACACGGCCGCGGCACGTTATTTGCATCTGGCTTGTTTTGGCCTCCCGCGATCGATTTTCTACAC
GATTGGGGCATTGATTCCGAGCCGCGAGGTGCCTACCACAAGCAAGGAAGTGCTGTCCAGAGACCAGAGCGGCTTGGTTG
GATCGCAGATGGTGGAGACGCTGCAAGGGGACAGGCGAGTCCACCTCGAGTCTATGAGCAAGGAACA-ACATGGCCGGGC
A--TCTTAGCAATGTTATCAAGCTGTGACACGGTAAACAAGGCAGCACTGAAGAATTAAGCAAGAATAGAAAGGCACATA
TGTTGCACACCTGTCATCCAAGGAGGACGGAGAAGTATTTCCTTCGATCATGTCATTGCACTTGACAGTTACGACTTAAG
ACAACTTGTAATTTCAAGCAGTACCTCCACTGCTTCGCATCATTGTTGGCTGAT--TATATATAGGTCGGTCCACCTTCT
T-TTTACGCCGAAACCATAGAACAATAGCTCTATGATATATTTTCCATTAAA-TTTTTAAAAATATGTACAAATGTCGGT
CTACCCGTCCCAGTCAAATCGCTCATCAA-GGTTACACTATCGAGGTTTGGT----------------------------
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>SNPs
-------------------------S---S-S------------------------S-----------------------
---------S----S-----S----S----------S-----------------------------------S-------
--------------------SSSSSSS---------------S---S-------------------S-------------
--------S--------------S---------------------------------------------------S----
------------------------------------------S-------------------------SS-S--------
-----------------------------------S--------------------------------------------
-S--S------------S------------------S-------------------------------------------
------------------------S---------------------------------------------S----S---S
-----------SSSS-----S---S-------------------S-----------------------------------
--------------------S-----------------------------------------------------------
------S--------------------------SS-----------S----------S----------------------
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----------------------------S---------------------------------------------------
-----------S--------S----------------S------------------------------------------
---------------SS----------------------------------S----------------------------
---S----------------------------------------------------------------------------
-----------------------S------------------------------------------S-S---------S-
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------------S--S---------------------S------------------S----SS-------SSS-------
--------S------------S-S--S-------------S---S--------------------------S-----S--
----------------S-------------------------S------S------------------------------
-------------------S---S-S------------------------------------------------------
--------------------------SS----------S-----S-----------------------------------
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-----------------S--------------------------------------------------------------
-----------------------------S------------------S--S----------------------------
--------------------------------------------------------------------------S----S
-SS-----------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------------------------S------------------------------------------------
-S---S--S-----S------------------S-----------------SS-------S--------S-----S----
--------------------S--------S-----S-S---S-S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_30
----------CATCGGCAACTAGGGCTTCT--------------------------------------------------
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>reverse_1700
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-------------------CCTCAGCGAGATGAGAAGCG-----------------------------------------
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>forward_1592
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----------------------------------------------------TACTCGACGCCATCATGTCC--------
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>reverse_2896
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---------------TCGTATAGGGGTGTGGAGCA-----------------------------------
