>input_sequence_67614
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-----------------------------------------------------------------------ATGGATGGT
ATGCTTGAATCTACCCCTCTTGGTTGATCATTGTTGGTTTTCCCTGCTGCTAGTTTGTTCTGCTAGCTATTCGGGTGGGA
GTTTGGGCTTAAGATCTCCGGATGAATGTTCTTGCTTTGTTTCCTTTTCTCCGTCTTCTTCACGGTAGAGCGACGCGGTT
TCCTTTTGGAGATCTTTTGCGTTCTCGTCAGGTTGAAACGAGTCGCATTCCCTCCGATTTTCCACGACAAAGGCTTAATT
TGGGCTTTCTTTTTGTTGCTTGTTGGAGGAGCAGTGGCAACTCGCCAAGTTTCACCTTATGATCTTCTTGTTCTGCTATT
TTACTGTCATGCCACCAAAGATTTGATCTTCTTGTTTCTTGTCTGGAACTTTGAAGGCCGCCATCTGCTGGGTGCCGCAG
GAGCTGCGAGAGCGAACCAGAACAATGCCAAGATCGTCAAGATGGCGGTGCCCGTGCTGGCCATGCTGCTGCTGCTGGGC
ACGGCGGCGGCTGTCTCCATGACGGCCGACGACCGGGCCTGCCTCCGCGCCATCTTCGGCAGCCACATGTTCCTGATGTT
CTGCGTGCTCGTGAACACCGCGTCCGGCTGTGCCCTGGCGTGGATGGCTGTCACGGCGCCGACGCAGGCTGCCCGGCGCT
CGTACGCGGAGTCCACCGTCGCGTCCTTCGTGCTTCTTGCCGTCAATCTGCACTCAGCCTTGTCCAAGTGAGTCTCTGTG
GTGCGTTGGTCTCTTAATTCTTCGCTTCTTCTCAAGTTTGGGCTGTGATTAACTTGCGCTCGTTGTTTTCGTCAGCCTCC
CGGATGTCAACGATGCTGCCTAG---------------------------------------------------------
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>chr2D_1_TraesCS2D01G213800
TGACAGCACCACCGCGATCGTGCAAGGCATCCTGGAGCAGACCCCACACCAATGGCGAAAGGGAGTGCAGACGCTGTGCT
GGCTTGCTTGCTGGGAGATTTGGCAGGAGAGAAACCACAGCACCTTCAGGCAGCATCTGCCGTGCGTGGCAGGAATCATC
AAGCGCATAAGAGACAACATCGAGCTATGGAGAACCACAGGAGCTGCATGCTTAGAGAGCCCTTTCGGGGACCCCCCTTG
AGAGATAAACCCACTCTTGTTTCTAGGGTTTTTTTCCGTGTGTGGCACTCCCTAAAACTTTGATCCTAGGATCCTCACCA
CCATTGTTGTTTTCTACTGCTTTCTGCTATGATCAATGAAAACGCCAGCAATTCTGGATCTTTCAAAAAAAAAACCCCTG
TAGGCTCGCGAGTGATCATCGGTCACGACAAATGCGAACATCTTGCCCATTGCCGACCCTTCAAACTACTCCCTCCGTTC
ATAATGTAAGACGTTTTTGCAAGCTAAACTAGCTTGTAAAAATGTCTTACATTGTGAGACGGAGTAGTAGAACTTTTCTA
GGAGGACCAGCCCATTCTGTTCGAACTATTTCAAATCAATGTGTCAGTTTCATGATGCGTTAAAGTGGACCGATGGCGTC
ATGTTGTTTCAGTTCATTTGGACTACCACCATTCGTCGCTTGTGAGGAACTGCGAATCGTCATGTGCGTTTTGAAAAAAG
CAAAATCAGTCGATTTTTACTGTCCCGAAAAGAAAGTATTCCAG------------------------------------
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-------------------------------------------------------------------------TAAGAGA
ATTGGGCGTGAGTAGG-----------TGCAAGAAACCAGAAAAGAAAAGGGTGGCGATCGAGCTCTGAAAAGAAGAAAC
TGAAATCTGAAAAAGCTGCGTCTGCTGCTGCCTCCAGACTGGAAATTTTGCCATCTGTCCA-TGAATCATCTTGA-----
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----------------------------------------------------------------CCAAAAGCTCCACCGC
AATTTCCTATAGAGCCCCGCCAACACCTCCACAACTCCCCGTGGTCAGGGAAAAGAGCAGTACT-GGAGAGATGGATGGT
ATGCTTGAATCTACCCCTCTTGGTTGATCATTGTTGGTTTTCCCTGCTGCTAGTTTGTTCTGCTAGCTATTCGGGTGGGA
GTTTGGGCTTAAGATCTCCGGATGAATGTTCTTGCTTTGTTTCCTTTTCTCCGTCTTCTTCACGGTAGAGCGACGCGGTT
TCCTTTTGGAGATCTTTTGCGTTCTCGTCAGGTTGAAACGAGTCGCATTCCCTCCGATTTTCCACGACAAAGGCTTAATT
TGGGCTTTCTTTTTGTTGCTTGTTGGAGGAGCAGTGGCAACTCGCCAAGTTTCACCTTATGATCTTCTTGTTCTGCTATT
TTACTGTCATGCCACCAAAGATTTGATCTTCTTGTTTCTTGTCTGGAACTTTGAAGGCCGCCATCTGCTGGGTGCCGCAG
GAGCTGCGAGAGCGAACCAGAACAATGCCAAGATCGTCAAGATGGCGGTGCCCGTGCTGGCCATGCTGCTGCTGCTGGGC
ACGGCGGCGGCTGTCTCCATGACGGCCGACGACCGGGCCTGCCTCCGCGCCATCTTCGGCAGCCACATGTTCCTGATGTT
CTGCGTGCTCGTGAACACCGCGTCCGGCTGTGCCCTGGCGTGGATGGCTGTCACGGCGCCGACGCAGGCTGCCCGGCGCT
CGTACGCGGAGTCCACCGTCGCGTCCTTCGTGCTTCTTGCCGTCAATCTGCACTCAGCCTTGTCCAAGTGAGTCTCTGTG
GTGCGTTGGTCTCTTAATTCTTCGCTTCTTCTCAAGTTTGGGCTGTGATTAACTTGCGCTCGTTGTTTTCGTCAGCCTCC
CGGATGTCAACGATGCTGCCTAGCTTCGCTGCGCGCTTGTTGATGTGCCTGCCGAAGGATCGAAGACGGATCATTTTGGA
GCTTGGAGATGCGCCGTTTCATTTCGGAGTACTAAGTTACTAGTAGATGTTTGGAAGATGTTTTATGCCAGTATCGTCGT
TGTACCAGGGGACATGCCTATCTGGGCTTTTGTTGTTGTC--------------TTCTTCGTCTGGGTTTTAGACTGTCT
GT---------CTGCTTTAAGTGGGATCCCTAGAATCTACTCCCTCCGACCCATAAAACAAGAGTGTTTTGAACATCAGT
GTAGTGTAAAAAATACTCTTATATTATGGGACAAAGGGAGTACGTAATAGTAGTATGAACTTCCATTCGAAAGGGCTTGA
ATTTGTTCAGCTGAAGCTTTGAACGTTTGGATCTATGTGAGTGAACGAACTTTGATTTTCCGAACCAACTGAGTGACTCT
GTTTAGTGTCGTGCGCAGCGTCTCTCATTCCTTAGTCGAGAATAATTTCCAACCAGTAGTTTGGACTCTGTTTTCACTGG
GGTTGAGACCGTCTACAGTTTGCTGCAGCAGGTTTGGGTTACAATTCTGCTTCTAGGCCTGGAGCGATACCAAAGCCGAG
ACACACAAAGTGAAAATAAACATTAGTTGGTTTTGATTCCGAACGACATGATAATCCTGCTTCCATAACAAAACTGCAAG
AAGATTCGAATGCAACAAAGTTAGCCATTTCGGGTTACTCATGATTCAGAAACGAAGAGAGAAAAAA-AGACACTTCAGA
AAGAGATAAATACACTGAATCAGCACTTTAGGTGAGATCGTAGGATCAACCCAAATTTTTTCGTATTTAGACAATTCAAA
AAATTCTGAAAATAATTTACAACATACCTGCGGGTTATGTCTACAACTCCCAAAAAAAAAACAGCTCAAAACTCGATCTG
CAATTAGAGATTAAAAAAAGACAAATTCGACTACGAATAGTGTCAGCTTTTGGTGAACAGTTTTTGACACTATTCATATC
TGATTTT
>chr2A_573
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------------CATTCTGTTCAAACTATTTCAAATCAGTGTGCCAGTTTCATGGTGCGTTAAAGTGGACCGATGGCATC
ATGTTGCTTCAATCCATTTGGACTACCACCATTCGTCGCTTGTGAGGAACTGTGGATCGTCATGTGCGTTTTGAAAAA-G
CAAAAGCAGTCGATTTTTACTGTCCCGAAAAAAAAGTATTCCAGTAAGGGCATGTATAATGGTGGCATATGGATACATAT
GCCTCATGACAAAAAGTAATTTGAGACATCTATATTTATTTTTTCTCCTCAATGCAAGCTACTATTAGGGCTTGTACAAC
ACTACACGGTGGACGGGTGCTCCAACTGCCACCTAGGTTCGGATGGTCCCAAATTGACGCAACGTGCTGCTTGCAGACTA
AAAGCTACATCCTGCAGAAGAGCCAACTTCTTACGTGAAAAGCGAAGAAAGGAAGAAAAGGCATGCTGCGTTGATGCATG
CAAGAGAGGGATAGAGAGAGCAGAAAAACAATGCTATGCATGTAAAGGACAGTGGGTCCACTACATACTGTGGCCTCCGA
TGGACAGTTTTTTTTAAATGGTGGCTTCATTACTTTTTGATTAATTTAAGAGCTGAGCAGTACCAGGGTGATGCCTCCGT
TGTACATGTCCTTAATGGGCTTCATTAAGAAATAGAAAATAAAGACTCTAGTACACATGTATCTCTACTTTCACTTAAAC
CTTTTCAGCTTTTGTCACCGGACCATACTTTTTCTCTTCAATCATCTGCCTCCTGGAGAGGATCCTGCTTCCCTATCCGA
ACCTACTTTACGTCATATTTGATTTTACATGGCATGCGAGGCATCACCTTGAGGCTATGCATTGTACATGCCCTAAGAGA
ATTGGGCGTGAGTAGGGAGTTACTCAATGCAAGAAACCAGAAAAGAAAAGGGTGGCGATCGAGCTCTGAAAAGAAGAAAC
TGAAATCTGAAAAAGCTGCGCCTGCTGTTGCCTCCAGACTGGAAATTTTGTCATCTGTCCA-TGTATCATCTTGACCAAT
GTACCTCCCTCCCCCGGCCCCGTATGCCCCATATAACTGGACGCCAAC--------------------------------
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----------------------------------------------CCCATGGCAATTTCTGTTCCAAAAGCTCCATCGC
CATTTCCTACAGAGCCCCGCCAACACCTCCAAAACTCCCCGTGGTCAGGGAAAAGCGTAGTGCT-AGAGAGATGGATGGT
ATGCTTGAATCTATCCCTCTTGGTTGATCGTTGTTGGCTTTTCCTGCTGCTAGTTT-TTCTGCTAGCTATTCGGGTGGAA
ATTTGGGCTTAAGATCTCCGCATGAATGTTCTTGCTTTGTTTCTTTTTCTCCGTCTTCTTCACGGTAGAGCGATGCGGTT
TCCTTTTGGAGATCTTTTGCGTTCTCGTCAGGTTGAAACGAGTCGCATTCCCTCCGATTTTCCATGACAAAGGCTTAATT
TGGGGTTTCTTTTCGCTGCTTGTTGGAGGAGCAGTGGCAGCTCGCCAAGTTCCACCTTATAATCTTCTTGTTCTGCTATT
TTAATGTCATGCTACCAAAGATTTGATCTTCTTGTTTCTTGTCTGAACTC-TGAAGGCCGCCATCTGCTGGGTGCCGCAG
GAGCTGCGAGAGCGAACCAGAACAATGCCAAGATCGTCAGGATGGCGGTGCCCGTTCTGGCCATGCTGCTGCTGCTGCTC
ACGGCGGCGGCAGTCTCCATGACGGCCGACGACCGGGCCTGCCTCCGCGCCTTCTTCCGCAGCCACATGTTCCTGATGTT
CTGCGTGCTCGTGAACACCACCTCCGGCTGTGCCCTGGCGTGGATGGCCGTCACGGCGCCGACGCAGGCTGCCCGGCGCT
CGTACGCGGAGTCCACCGTCGCGTCCTTCGTGCTTCTTGCCGTCAATCTGCACTCAGCCTTGTCCAAGTGAGTTTCTTTG
GTGTGCTAGTCTATTAATTCTTCACTTCTTCTCAAGTTTGGGCTGTGATTAACTTG-GCTCGTTGTTTTCGTCAGCCTCC
CGGATGTCGGCGATGCTGCTTAGGTTCGCTGCGCGCTTGTTGATGTGCCTGCTGAAGGATCGAAGATGGATCATTTTGGA
GCTCGGAGATGCGCCGTTTGAGTTACTACTGCTCCTA----------------GATGGTGTTTTATGCTAGTATT-----
-------GGGGACATCTCTGTCTTATCTTTTGTTGTTGTTGTCGTCTGTCTGTTTTCTTCATCTGGGTTTTAGACTGTCT
GTTTGCATCTGCTGCTTTAATTGGGATCCCTAGAATCT------------------------------------------
-------------------------------------------------------------TCCATTCAGAAGGGCTTAA
ATTTGTTTAGCTGAAGCTTTGAACGTTTGGATGCATGTGACTGA--GAACTTTGATTATCTGAACCAACTGAGTGACTCT
GTTTAGTTGGGACTCTG------------------------------------------------------TTTCACTGG
GTTTAGGACAGTCTACAGTTTGCTGCAGCAGGTTTGGGCTACAATTCTGCTTCTAGCCCTGGAGTGATACCAAAGCTGAG
ACACACAGAGTGAAAATAAACTGCAGTTGGTTTTGATTCCGAACGACATGATAATCCTGCTTCCATAACAAGACTGCAAG
AAGATTCGAATGCAACAAAGTTAGCCATTTCGGGTTACTCATGATTCAGAAATGAAGAGAGAAA-AGGAGACACTTCAGA
AAGAGATAAATACACTGA--------------------------------------------------------------
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>chr2B_607
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----------------------------------------------GTTTCATGGTGCGTTAAAGTGGACCGATGGCGTC
ATGTTGCTTCAGTTCAGTTGGACTACCACCATTCGTCGCTTGTGAGGAACTGCGGATCGTCATGTGCGTTTTGAAAAA-G
CAAAAGCAGTCGATTTTTACTGTCCCGGAAAGAAAGTATTCCAG------------------------------------
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-------------------------------------------------------------------------TAAGAGA
ATTGGGCGTGAGTAGGGAGTTACTCAATGCAAGAAACCAGAAAAGAAAAGGGTGGCGATCGAGCTCTGAAAAGAAGAAAC
TGAAATCTGAAAAAGCTGCGTCTGCTGTTGCCTCCAGACTGGAAATTTTGTCATCTGTCCATTGTATCATCTTGACCAAT
GTACCTCCCTCCCCCGGCCCCGTATGCCCCATACAAAGGCATGTACAATGCATAGCCTCAAGGTGATGCCTTGCATGCCA
CGTAGGTTCGGATATGACGTAAAGTAGGTTCGGATAGGGAAGCGGGATCCTCTCCAGGAGGCGGGTGCTTGAACAGAAAA
AGTGTGGTCCGGTGACAAAAGCTGAAAAGGTTGAAGTGAAAAATAGAGATGCATGTGTACTAAAGTCTTTATTTTCTATT
TCTTAATGAGGCACACTAGTGGTAGCTTGCATTGGGGAGAAAAAATAAATGTAGATGCCTCAAATTACTTTTTGTCATGG
GGCATTTGTATCCATATGCCACCATTGTACATGCCCTAACTGGACGCCCATGGCGATTTCTGT---------TCCATCGC
CATTTCCTATAGAGCTCCGCCAACACCTCCACAACTCCCCGTGGCCAGGGAAAAGCGTAGTACCAAGAGAGATGGATGGT
ATGCTTGAATCTATCCCTCTTGGTTGATCATTGTTGGTTTTTCCTGCCGCTAGTTTGTTCTGCTAGCTATTCGGGTGGAA
ATTCGGGCTTAAGATCTCCGGATGAATGTTCTTGCTTTGTTTCCTTTTCTCCGTCTTCTTCACGGTAGAGCAATGCGGTT
TCCTTTTGGAGGTCTTTTGCGTTCTCGTCAGGTTGAAACGAGTCGCATTCCCTCCGATTTCCCATGACAAAGGCTTAATT
TGGGGTTTCTTTTCGTTGCTTGTTGGAGGAGCAGTGCCAACTCGCGAAGTTTCATCTTATGATCTTCTTGTTCTGCTATT
TTACTGTGATGCTACCAAAGATTTGATCTTCTTGTTAATTGTCTGAA--------GGCCGCCATCTGCTGGGTGCCGCAG
GAGCTGCGAGAGCGAACCAGAACAATGCCAAGATCGTCAAGATGGCGGTGCCCGTGCTGGCCATGCTGCTGCTGCTGCTC
ACGGCGGCGGCAGTCTCCATGACGGCCGACGACCGTGCCTGCCTCCGCGCCTTCTTCCGCAGCCACATGTTCCTGATGTT
CTGCGTGCTCCTGAACACCACGTCCGGCTGTGCCCTGGCTAACTGTAGA-------------------------------
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----------------------------------------------CTGCTTCTAACCCTGGAGTGATACCAAAGCTGAG
ACACACAGAGTGAAAATAAACTGCAGTTGGTTTTGATTCCGAACGACATGATAATTCTGCTATTATAACAAAACCGCAAG
AAGATTCAAATGCAAGAAAGTTAGCCATTTGGAGTTACTCATGATTCAGAAACGAAGAGAGAAAAAGGAGGCACTTTAGA
AAGAGGTAAGTACAC-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----------S---------------S----S----------S-------------------------
------S-----------------------------------------------S-----------------------S-
-----S--------------------------------------------------------------------------
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---------------------------S----------------------S-------------S---------------
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----------------------------------------------------------------------------S---
S------------------------------------------------------S-S-------S--------------
-------------S---------------------------S------------------------------------S-
S------------------------------------------------------------------------S------
----------------------------------------------------------------S---------------
----S--------S------------------------------------------------------------------
------------S--------------------------------S-SSSS-----------------------------
-----------------------------------------------------------------------------SS-
-----------S---------------------------------------S-----S----------------------
-------------------S----------------------------S-------------------------------
-------------------------------------------------------------------------S---S--
---S-S-S----S----------S--------------------------------S-----------------------
--------SS---------S---S----------------------------S-------------S-------------
---S---------------S-S--SSS-S-S--SSSSSSSSSSSSSSSSSSSS--S-S----------S-----SSSSSS
SSSSSSS--------SS--S---SSS-------------S--------------------S-------------------
--------------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS--------S-
-------S------------------------SS------S---SS-----------S--S-------------------
-------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-S--SS---S----------------------------S-----------------S-------S-----------S---
-------S-------------SSS--------------------------------------------------------
------------------------------------------------------------------S-------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_209
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-----------------------------GAGAACCACAGGAGCTGCAT-------------------------------
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>reverse_3044
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---ACCAGGGGACATGCCTATCT---------------------------------------------------------
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