>input_sequence_67612
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---------------------------------------------ATGTGTAGCCGACAGTCAAGTCCAACCGTAGAACA
GTGCTGCTGCTGTGCATCACATGGCTTGAATTTAGCATCGTCCACAAATCGTCTGCGTGGCATCGTGTGTATAGCAGCGT
TCTTGACACAAAGCCAACTCCCTCCCGTGCTAGTCGGCAACCGGCAACCAAACTACTCCCGCAGATCGATCCTTGGGCGA
GAAGAAAGAAAG----GAAGAAACACCAATGGCGGCCGCTGGTTCCTCCGCCGCGTGGAAGCGCTGGCTCCGCCCTGAGG
TACGCGCGATTCAAATCCCCCGCTCCTCCCTCTCGTTCCTCCTCGGCCCGTAGATCGGAATTTTCCGTGATCGATGAAAC
GAACTAGCCATGCGTTTTTCTCTTCGTGTTCCGTGATCTCGCTGGGTTTTCGGCGGA-AGGTTTGATCTGT-TTTTCTCG
CGATGAATCACGCGCTGGC---ACGGTGCAGGTGTATCCGATCTTCGCGGCGACCGGCGTGGCCGTCTCCATCTGCGCCA
TGCAGCTCATCCGCAACATCACCACCAACCCGGAAGTCAGGTACCGACCCATCACCCATGCCTGTCTTG-------CGGC
GGAGACACCGATCTGACT----TCAACCGCCGATGGTTGACGAGACCGTTTTCCAAATCTGAAACCCCGCCGCCGTTCGT
TGTCGTGTCGATCTGTTGTGCAGGGTGACGAAGGAGAACCGGGCGGCGGGGATCCAGGAGAACTTCGACGAGGGGAAGCG
CTACTCGCAGCACGGCTTCAGGAAGTTCATCGACCGCCAGCGCCCCGAGATCATGCCGGCGATCAACAACTTCTTCTCCG
ACCCTCCCAAGTATTAG---------------------------------------------------------------
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>chr2B_1_TraesCS2B01G123400
CACTCTCTAGAGTGGGAGTCTGATGTACCTGCCCATGTGGGCGTTCGTGTCTTGGGCGATTTGCCCAAGAGCAGTTAAGT
TATAAAGCTTTGGCTTTGCCCTAAAAAAATCCAACAACGGATGTAACAAAAAAAGCCAGCGCCATAGTAGGTCGTAGCTC
CGCCGCTATGGATGTAGCAAATCCGGCGCCGGTAGTAGCAAACAATGGCGACAGTTGCAACAAAAAACTTGGCCACTT-C
TAGCAAAGTTCTTCTCGCTGGTTGCCTCGCTTAGTTCGCTTCTCCTTCGTCGTCGTTGACGTGGGGTTGCAACTTTTCTG
CACACGGTTCCAGCACCATCAGCGGTGGGTTGTAACTTTCATGTGCTCCTCGCCGTCCGGTAGAGCAGAGTTGCAATCAT
CTCGCCGGCCGATGGTAGCACTTCGTCGCTGGTGACAGAACTTAC---AGTTGCGAGAGACATGGAGGGAGGCTGCGGTA
TGTGAAGAAGCGGAGCCGCGACGGCTGGGGGGTTGAAGAAAGAGGAAAGGAGAAGAGCAGTTTCGCGCGCGGGCCCATCC
ATGTACACTTGGCTCGCGTGGGACGGTTGTTTCCGTGGGCGCGTGCGCCAGCTTGGCGTATGAACCGGCAGAAAGTTCGG
CCGGTCTGCCGGCTCGAAACGTTTCCTAAATAAAAATAA-GATGAAGATTTGCAGCAGAGGGGTTACTTCAAACTTGTAC
AGTATGTGTTTCTGTAGAATTTGCACTCAACCCAAATTAACATGTTCGTTGCGTCACGTTTCGTGTTTTTGCTCACACGG
TACCATAACGGCGCGGGCGTGACCAGTTCACGTGTCGTACGCGTTGCCAAGCAGCGCATTTGGTCACCGCACGCTGGCGA
ATCCTCACTCCTCCGGTCTTCGCAAACTCCACGTCCCCACCGCGTCAACCAAACGCGCCTAGCCCGCTATATAGCGACCT
GGGTTGACACAACGAAATTGCTGTGCAGACGAAACTGCACACACGATGTGTAGCCGACAGTCAAGTCCAACCGTAGAACA
GTGCTGCTGCTGTGCATCACATGGCTTGAATTTAGCATCGTCCACAAATCGTCTGCGTGGCATCGTGTGTATAGCAGCGT
TCTTGACACAAAGCCAACTCCCTCCCGTGCTAGTCGGCAACCGGCAACCAAACTACTCCCGCAGATCGATCCTTGGGCGA
GAAGAAAGAAAG----GAAGAAACACCAATGGCGGCCGCTGGTTCCTCCGCCGCGTGGAAGCGCTGGCTCCGCCCTGAGG
TACGCGCGATTCAAATCCCCCGCTCCTCCCTCTCGTTCCTCCTCGGCCCGTAGATCGGAATTTTCCGTGATCGATGAAAC
GAACTAGCCATGCGTTTTTCTCTTCGTGTTCCGTGATCTCGCTGGGTTTTCGGCGGA-AGGTTTGATCTGT-TTTTCTCG
CGATGAATCACGCGCTGGC---ACGGTGCAGGTGTATCCGATCTTCGCGGCGACCGGCGTGGCCGTCTCCATCTGCGCCA
TGCAGCTCATCCGCAACATCACCACCAACCCGGAAGTCAGGTACCGACCCATCACCCATGCCTGTCTTG-------CGGC
GGAGACACCGATCTGACT----TCAACCGCCGATGGTTGACGAGACCGTTTTCCAAATCTGAAACCCCGCCGCCGTTCGT
TGTCGTGTCGATCTGTTGTGCAGGGTGACGAAGGAGAACCGGGCGGCGGGGATCCAGGAGAACTTCGACGAGGGGAAGCG
CTACTCGCAGCACGGCTTCAGGAAGTTCATCGACCGCCAGCGCCCCGAGATCATGCCGGCGATCAACAACTTCTTCTCCG
ACCCTCCCAAGTATTAG-----TTCAGTTCAGGCAGGCCGCG-AATGCCT----------CTCTTCGTTCCTTCCCAAGA
TTGTGCCAGGATTTTAGATACTGCCGACGATGTTGTTTGTCATAATTGGAATCATTT----GCATGGCCATGGATTGATT
TGATTGCCTGGCTGTACGCTTAAGAATCATATAATTCGATTCATTGCCTGGCAATGTT----------------------
-------------AATATTTGATCATGTTTACGAGTATTACTTTTGTGATTTTAGATCTCTGATTTTGTTTTTC-TTTAG
GCAAGCGTC----AATTAGCGGCCGTGTATTGTTGCTGTTTAATGCCCTCCAGTTGCTTCACCGTAGCACCTCTACTAGG
TCACAGGCACTGCTTTTTTTTTTAGAAACAAGACCGCATGCACATAAG-CAGAACCCAGCCGGAAAAACCTTTGGGCCTC
TTCTCAGCTAAGCATGGTTTTTAAGCAGCCCGCTATAGCACCACCATAGCACACTATAGCCTTTAAAAAAGGTCATGCGC
TAAGGGTTTTTTGTCCAAACACATGAACAAACATTTTAAATAGCCCGCTATAGTATCGCTATAGCACGCTATAGCATTTA
GAAGAGGTCCGCCGCTAAGAGGCTTAGCGCGCTATTTAAAATTTTACAGCTAAGCCTAGAACCCACAAAGCCCAATACAA
ATGTTCGTACAGCAGCTCTAGTCCATCTAATTCAGAAAAACCTGAATATTGGGAGGGTGGCATTTAAGGCTTTGTACATT
CTTAGGTGCTCAGGGAAGATGGTCAGAGAAATAGCCGAGTTTTTTTTATTTTTACGAAAGGGCCACGTTTAATTGTTCCT
CCCGAAGGATGTGGTACAATTCAAATTCTTGATTTGGGGTATCTCACTGCCAGATAGTAATCTCACAAAGTGTGTCCCAT
ATGCCCAAAATAGCGGCGCTGAACTAATTACTAGATATGATAGTCTTAGGATAGTCAGATGGTAATTGAAGAAGATGTTG
GTCCGAAGATACTTACATCACAAATTCTTTATCTTGAG
>chr4A_106
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-------------------------AAAATCCAACAACGGATGTAACAAAAAAAGCCAGCGCCGTAGTAGGTCGTAGCTC
CACAGCTATGGATGTAGCAAATCCGGCGCCGGTAGTAGCAAACAATGGCAACGGTTGCAACAAAAAACTTGGCCACAT-C
CAGCAAAGTTCTTCTTGCCGGTTGCCTCGCTTAGTTTGCTTCTCCTTCGCCGCCGTTGACGTAGGGTTGTAACTTTTCTG
CACACGGTTCCAACACCATGAGCGGTGGGTTGTAGCTTTCATGTGCTCCTCGTCGTCCCGTAGAGCAGAGTTGCAA-CAT
CTCGCCGGCCGGTGGTAGCACTTCGTCGCCGGTGACAGAGCTTAC---AATTGCGAGAGGCATGGAGGGCGGTTGCGGTC
TGTGAAGAAGCAGAGCTGCGACGGC-TGGGGGTTGCAGAAAGAGGAAAGGAGAAGAGTAGTTTTGCGCGCAGACCCACCC
ATGTACACTTGGCTCGCGTGGGACGGTTGTTTTCATGGGCGCATGCGCCGGCATAC-----GAACCGGCGGAAAGTTCCG
CCGGACTGCCGGCTCGAAACGTTTTCCTA---------------------------------------------------
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>chr5D_106
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-------------------------AAAATCCAACAACGGTTGCAACAAAAAAAGCCACCGCCATAGTAGGTCGTAGCTC
CGCCGCGATGGATGTAGCAAATCCGGCGCCGGTAGTAGCAAAAAATGGCGACGGTTGCAACAAAAAACTTGGCCGTTT-C
TAGCAAAGTTCTT-TCGCCGGTTGCCTCACTTAGTTTGCTTCTCCTTCGCTGCCGTTGACGTGGGGTTGCAATTTTTTTG
CACACGGTTCCAACACCATCAGCGGGGGGTTGTAGCTTTTCTGTGCTCCTCGTCGGCCGGTAGAGTAGAGTTGCAA-CAT
CTCGCTGGCCGGTGGTAGCACTTCGCCGCCAGTGACAGAGCTTGCACAAGTTGCGAGAGGCATGGAGGGAGGCTGCGGTC
TGTGAAGGAGCAGAGCCGCGGCGGC-TGGGGGTTGAAGAAAGAGGAAAGGAGAAGGGCAGTTTCGCGCGCGGGCCCACCC
ATGTACACTTGGCTCGCGCGAGACGATTGTTTACATGTGTGCGTGCGCCAGTGTGGCGTGCGGGCCGGCGGAAAGTCCGG
CCGGACTGCTGGCTCCAAACGTTT--------------------------------------------------------
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>chr5D_106
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-------------------------AAAATCCAAGAACGGTTGCAACAAAAAA-GCCACCGCCATAATAGGTCGTAGCTC
CACCGCGATGGATGTAGCAAATCCGGCGCCGGTAGTAGCAAAAAGTGGCGACGGTTGCAACAAAAAACTTGGTCG-TT-C
TAGCAAAGTTCTT-TCGCCGGTTGCCTCACTTAGTTTGCTTCTCCTTCGCTGCCGTTGACGTGGGGTTGCAACTTTTTTG
CACACGGTTCCAGCACCATCAGCGGGGGGTTGTAGCTTTTCTGTGCTCCTCGTCGGCCGGTAGAGTAGAGTTGCAA-CAT
CTCGCCGGCCGGTGGTAGCACTTCGTCGCCGGTGACAGAGCTTGCACAAGTTGCGAGAGGCATGGAGGGAGGCTGCGGTC
TGTGAAGGAGCAGAGCCACGGCGAC-GGGGGGTTGAAGAAAAAGGAAAGGAGAAGGGCAGTTTCGCGCGCGGGCCCACCC
ATGTACACTTGGCTCGCGCGAGACGATTGTTTACATGTGTGCGTGCGCCAGTGTGGCGTGCGGGCCGGCGGAAAGTCCGG
CCGGACTGCTGGCTCCAAACGTTT--------------------------------------------------------
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>chr5A_106
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-------------------------AAAATCCAACAACGGTTGCAACAAAAAA-GGCATCGCCATAGTAGGTCGTAGCTC
CGCTGCGATGGATGTAGCAAATCCGGCGCCGGTAGTAGAAAAAAATGGCGACGGTTGCAACAAAAAACTTGGCCG-TTTC
CAGCAAAGTTCTT-TCGCCGGTTGCCTCACTTAGTTTGCTTCTCCTTCGCTGCCGTTGACGTGGGGTTGCAACTTTTCTG
CACACGGTTCCAGCACCATCAGCGGGGGGTTGTAGCTTTTCTATGCTCCTCGTCGGCCAGTAGAGTAGAGTTGCAA-CAT
CTCGCCGACCGATGGTAGCACTTCGTCGCCGGTGACAGAGCTTGCACAAGTTGCGAGAGGCATGGAGGGAGGCTGCGGTC
TGTGAAGGAGCAGAGCCGCGGCAGC-TGGGGGTTGAAGAAAGAGGAAAGGAGAAGGGCAGTTTCGCGCGTGGGCCCACCC
ATGTACACTTGGCTCGCGCGAGACGATTGTTTACATGGTTGCGTGCGCCAGCGTGGCGTGCGGGCCGGCGGAAAGTCCGG
CCGGACTGCTGGCTCCAAATGTTT--------------------------------------------------------
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>chr2A_664
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---------------------------AAATAAAGATAATGATGAAGATTTGCGGCATAGTGGTTACTTCACATTTCA--
------TGGTTCCGTGGAATTCGCACTCAACCCAAACTAACATGTTCGTTGCGTCACGTTTCGTGTTTC-GCTCACACGG
TAGCATTACGGCGCGGGCGTGACCAGTTTACGTGTCGTACGCGTTGCCAAGCAGCGCATTTGATCACCGCACGCTGGCGA
ATCCTCACTCCTCCGGTCTTCGCAAACTCCAGGTCCCCACCGCGTCAACCGAACGCGCCTCGCCCGCTATATAGCGACCC
GGG-----------------------------------------------------------------------------
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--TTGACACAAAGCCAACCCCCTCCCGTGCTAGTAGGCAACCAGCAACCAAACTACTCCCGCAGATCAATCCTTGGGCGA
GAA----GAAAG----GAAGAAACATCAATGGCGGCCGCTGGTTCCTCCGCCGCGTGGAAGAGATGGCTCCGCCCTGAGG
TACGT-CGATTCAA--CCCCCGCTCCTCCCACTCGTTTCTCCTCGGCTCGTAGATCGGAAAATTCCGT----GATGAAAC
GAACTAGCCATGCGTTTTTCTCTTCGTGTTCCGTGATCTCGCTGGGTTTTCGGCGGA-CGATTTGATCTGTGTTTTCTCG
CGATGAATCACGCGCTGCTGGTACGGTGCAGGTGTACCCGATCTTCGCGGCGACCGGCGTGGCCGTCTCCATCTGCGCCA
TGCAGCTCATCCGCAACATCACCACCAACCCGGAAGTCAGGTACCGAACCCCACCCCAACACGCGCCCCGTCTCGTCGGC
GGAGACCCCGATCTGACT----TCAACC--------TTGACGAAACCGTTTCCCAAATCTTGTTCGT-------------
-----TGTCGATC---TGTGCAGGGTGACCAAGGAGAACAGGGCGGCGGGGATCCAGGAGAACTTCGACGAGGGGAAGCG
CTACTCGCAGCACGGCTTCAGGAAGTTCATCGACCGCCAGCGCCCCGAGATCATGCCGGCCATCAACAACTTCTTCTCCG
ACCCTCCCAAGTATTAGTTCAGTTCAGTTCAGGCAGGCCGCGCAATACCGCTCTGATGCACTGTTCGTTTCTTCCGAAGA
TTGCGCCCGGATTTTAGATGCTACCC---ATGTTGTTAGTCATAATTCGAATCATTTACATGCATGGCCATGGATTGATT
GCCTGCCCG----GTACGCTTAAGAATCATATAATTCGATTCATTGCCAGGCAATGTT----------------------
-------------AATATTTGATCATGTTTACGAGTATTACTTTTGTGATTTTAGATCTCTGATTTTGGTTTTCTTTTAG
GCAAGCGTC----AATTAGCGGCCGTGTATTGTTTCTGTTTAATGCCCTCCAGTTGCTTTACGGTAACACCTCTA---GG
TCACATGCACTA--TTTTTTTTTAGAAAC-AGACCGCATGCACATAAG-CAGAACCCAGCCGGAAAAACCT---------
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>chr2D_744
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----------------------------AACCCAAACTAACATGTTCGTTGCGTCACGTTTCGTGTTTTTGCTCACACGG
TACCATTACGGCGCGGGCGTGACCGGTTCACGTGTCGTACGCGTTACCAAGCAGCGCATTTGGTCACCGCACGCTGGCGA
ATCTTCACTCCTCCGGTCTTCGCAAACTCCACGTCCC-ACCGCGTCAACCAAACGCGCCTCGCCCGCTATATAGCGACCC
GGG-----------------------------------------------------------------------------
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--TTGACACAGAGCCAACCCCCTCCCGTGCTAGTTGGCAACCAGCAACGAAACTACTCCCGCAGATCAATCCTTGGGCGA
GAA----GAAAGAAAGGAAGAAACACCAATGGCGGCCGCTGGTTCCTCCGCCGCCTGGAAGCGCTGGCTCCGCCCTGAGG
TACGA------------------------------------------TCGTAGATCGGA---------------------
-------------GTTTTTCTTTTCGTGTTCCGTGACGTCGCTGGGTTTTCGGTGGACCGATTTGATCTGG-CTTTCTCG
CCATGAATCACGC---GCTGGTACGGTGCAGGTGTACCCGATCTTCGCGGCGACCGGCGTGGCTGTCTCCATCTGCGCCA
TGCAGCTCATCCGCAACATCACCACCAACCCGGAAGTCAGGTACCGACCAAACCCCAACC-CGCGCCCCGTCTCGTCGGC
GGAGACCCCGATCTGACTGGCTTCAACCGCCGACGGCCGACGAAACCGTTTTCCAAATCTGAAATCGCGCCGCCGTTCGC
TGTCGTGTCGATC---TGTGCAGGGTGACCAAGGAGAACCGGGCGGCGGGGATCCAGGAGAACTTCGACGAGGGGAAGCG
CTACTCGCAGCACGGCTTCAGGAAGTTCATCGACCGCCAGCGCCCCGAGATCATGCCGGCGATCAACAACTTCTTCTCCG
ACCCTCCCAAGTATTAGTTCAGTTCAGTTCAGGCAGGCCGCG-AATACCGCTCGGATGCACTCTTCTTTCGTTCCAAAGA
TTGCGTCCGGATTTTAGAAACTGCCCATGATGTTGTTTGTCATAATTCGAATCATTTACATGCATGGCCATGGATTGATT
TGATTGCCTGGCTGTACGCTTTTGATCGTATCTCGAACTTGATCGGGTTAATTTGCATGTCGTTTTAGAATTGAGTGCCT
CCTACCAAGAGGAAATATTTGATCATGTT-ACGATTATTACTTAT------------------TTTTGGTTTTCTTTTAG
GCATCCGCAAGTTAATTAGCGGCCGTGTGTTGTTGCTGTTTAATGCCCTCCAATTGCTTCACGGCAGCACTTAGGGCACC
GCCACTAATT---TTTTTTCTTCAGAAAC-GGACCACAAGCACGTTAGCCAGAACCCAGCTGCAAAAACTTTTGGGCCTC
TTCTCAGCTAA---------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
----------------------------------------------------S---------------------------
------------------S-----------------S------------S--S---------------------------
----------------------------------S-----------------S-----------------------S---
-----------------------------S---------S-------------------S-------------------S
-----------S-------------S---------------------------------------------------S--
--------------------------------S-S-----------------S------SS--------S----------
----S-------------------S-S-------S------------------S---S--S----------S-S--SSSS
SSSSSS--S---S--S-----S--------------S-------------------------------------------
------S-------------------------------------------------------------------------
------------------------------------------------------------S------------------S
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------S---------------S-------S------------------------S------------
---SSSS-------------------------------------------------------------------------
----SS--------SS--------------S------S---------S------------SS------SSSS--------
----------------------------------------------------------S-S-------------------
-----------------SS-----------------S-------------------------------------------
---------------------------------------------------S-S----SSS-SSS-SSS-----------
------S--------------------------S---------S----------------------S------------S
-------------SSS-------------S--------------------------------------------------
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----------------------------------------------S--S-------------------------S----
---S---S-----------------S-S-------------------S--------------------------------
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--------------------------------------------------------------------S-----------
--------------------------------------------------------------S------------SS---
-----S-----SS----------------S--------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_975
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---------------------------------------------------------------------------GACCT
GGGTTGACACAACGA-----------------------------------------------------------------
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>reverse_2612
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---------------------------------------------------GGAGGGTGGCATTTAAGGCT---------
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