>input_sequence_67545
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--------------------------------------ATGGAAGCTACCGACAGCCTCCTCATGGCCACCGAGCTCAGG
CTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAGGGGCAAGAA
GCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCAGCCCCCGTGC
CCAAGTGAGTACCAGCCCAACCCCTTCAGCTTCCGTGCTCACTACCTTATTCTTCTTCCTCCAACTCCAAGGCCAGAGTT
CTTACATGCATGCTTG-TCTCAACTCTCGCAGAGCACAAGTTGTCGGGTGGCCGCCGGTGAGGC------------GCTG
CTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGGCCAGCAGCAAAAACACGCCGTCTGCGGCGGCGC
CGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTGAGGAAGGTCGACATGAGGATGTAC
AAGGGCTACAGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGCTTCCAACGG
CGGCGGCGCAAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAGACGTGCCCT
TCGAGTAAGTCTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGATCATTTTGTG
AAGCAGTGACTTATGATCTTTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGATCATCAAGA
GATCCGAAGCCACAGGCCTGGGATCCAAATGA------------------------------------------------
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>chr5B_1_TraesCS5B01G381800
CGTTTTCTATTCTATTTCA---CTCCATTCCGGATGAAAGTCCATGATATCATCATAT--CATCGCTCCATACCATACGT
GCATGATTCGTCGATCGGCCCATC---CGGCCGGGTTACAGGGGTGCCGGGTTGCGATCGCCGCCCATGCCGTCC-----
---CAAGTCCCGAT---CGATCGCCTCTCAGAAGCTTCCAGCCTGACACGTCCAGTGCTCAGCTAGCCACACTTACGTAA
----CGGATCGAACTGAAACCCGTTGCGTCGTGTGATGGACGGGAC-------GGGACGGCAGACAACCCGTTAGACATG
CCATGTGCCCCACGGAATACAATATCTGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAACTAGCTAG-T
AGGAT----AATCAATCAATCAGTCCAGCTCTCGATTGTTTTGTTT-----AGGTATGTAGCTAAACAACTGGGAGATAC
AATACTCCATCAACG----TCAAGCTAGTGTGTACC---ATCGTACAGCCAGGCCGATCGGCGCAGCCAGCCGGCGGCGA
CGCA------CATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTGCGCCGCCCG
CCCCGCCCGCGCCCGCGCCCGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCAGCCACCCCGACACCCCAG
ACTAGCCACACCACACCACACCACACCACACACAGCCCCCGCCGCGTGCTGCGCTCGATCGT--------TGCACCTACG
TGT---------CCGCGTATGTCATTGTCAGCCCATGCGC--TGGCTCTATGCCAACTTACTTACTCGCGATGCCCTTCC
TTCGC----GTCCCCGCCTATAAAACATGGGCGCCAACCCTACCCTTGCCAAGCCAACGCAAGCAACACACACATCGTCT
TCTCTTCTCAGCGAGCCAGAGCTATCAGACCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCTTCCCTACCG
CAAGCACTACGCGGCATCTTCCC--ACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACCGAGCTCAGG
CTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAGGGGCAAGAA
GCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCAGCCCCCGTGC
CCAAGTGAGTACCAGCCCAACCCCTTCAGCTTCCGTGCTCACTACCTTATTCTTCTTCCTCCAACTCCAAGGCCAGAGTT
CTTACATGCATGCTTG-TCTCAACTCTCGCAGAGCACAAGTTGTCGGGTGGCCGCCGGTGAGGC------------GCTG
CTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGGCCAGCAGCAAAAACACGCCGTCTGCGGCGGCGC
CGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTGAGGAAGGTCGACATGAGGATGTAC
AAGGGCTACAGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGCTTCCAACGG
CGGCGGCGCAAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAGACGTGCCCT
TCGAGTAAGTCTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGATCATTTTGTG
AAGCAGTGACTTATGATCTTTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGATCATCAAGA
GATCCGAAGCCACAGGCCTGGGATCCAAATGATGAAGATTTGAGAAGC-AAGATGATATCATGGCCTCTCTCTCTTTTTT
TCTTTTTAA-----------------------------------------------------------------------
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-----------------------------GGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAGCCAAAAGGG
ATGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTTTTAGAAGCACA
AAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGATCACTTATC
ATCATGCATGTTTT-GCCGGGGGGCTTTCCTTCCGGTTTCCCCTTGGT-----TGTGCTTTTGTATTCAAGTTGTCA-AG
TCACTTTATCATCAACACTATTGTGTTGGTTGTTGTTTGTGAGCACCACTTGTTATGCATTCTCAATCCGAGTCCAAAGG
ATGTTTAGG-------------------------------TGCGGTGGGCAGTGATATCTGCGATGATCGAGCATTTCGA
CAACGTTTCAATCTGTTGTGTACGGTACAACC-------AAATTGGATGGATCTTCCACTTGTTTAGCTAAGACTGCAAA
CACAGATGGAACACATGTGATTTGTTTTGTACCACCGCAACATTTTAAGGTCTCTTT-AATCGAAGGAATTTCAAACATA
TTGTGTACGATTTCTATATGCTTAGAGAACTTGATAGATTTGATAGGAAA------CCTTTTG-----------------
-----------------------------GATGTTACTTATGAGCCACTTCTCATCCGATACCAAATAGAAATTTCTATT
CGAGAGTTCATATGCTATGTAAAAAAATCGCCATA-------GTGCCAATTCCGTTCCGACATGGTTTTCAATCCTGTTA
AGATTCAAGGGTTTCTAACATCA------CATTCCTGTGTTT---TAGAGTCTTGCGAACCGTGGAGGCTCTGTT-GAAT
CTTAGACCTAATGACACTACGAAAGGAAGGACGACTAGTTCCATCCGAATCTTTGGCCCATGTTCCCAGAGACGTTGACT
TGAATCGGAATTCGGAACCATGTGCCGCTGATGAGATAAAATTCGATC-
>chr5A_1
CGTTTTCTATTCTACTATTCCGCTCCATTCCGGATGAAAGTCCATGATATCATCATAT--CATCGCTCCATACCATACGT
GCATGATTCGTCCGTCGGCCCATCCTCCGGCCAGGTTACAGGGGTGCCGGGTTACGATCGCCGCCCCCGCCGCCCATGCC
GTTCAAGTCCCGATTCCCGATCGCCGCTCAGAAGCTTCCGGCCTGACACGTCCAGTGCTCACCTAGCCACACTTACGCAC
GTAGCGGATCGAACTGAAACCCGTTGCGTGGTGTGATGGACGGGACGGGGACGGGGACGGCAGACAACCCGTTAGACATG
CCATGTGCCCCACGGAATACAATATCTGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAATTAGCTAGCT
AGGATAATCAACCAATCAGTCAGTCCAGCTCCCGATTGTTTTGTTTTGTTTAGGTATGTAGCTAAACAACTGGGAGATAC
AATACTCCATCAGCATCTATCAAGCTAGT-------------GTACAGCCAGGCCGATCGGCACAGCCAGCCGGCGGCGA
CGCA------CATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTGCGCC-----
-------------------CGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCGGCCATCCCGACACCCCAG
CCTAGCCACACCACACCACACC----------CAGCCCCCGCCGCGTGCTGCGCTCGATCGT--------TGCACCTACG
TGTGCGTCCGCCCCGCGTATGTCATTATCAGCCCATGCGC--TGGCTGTGTGCCA----ACTTACTCGCGACGCCCTTCC
TTCGCGGGAGTCCCCGCCTATAAAACATGGGCGCCAACCCTACCATTGCCAAGCCAACACAAGCAA-ACACACATCGTCT
TCTCCTCTCAGCGAGACAGAGCTATCAGATCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCTTCCCTAGCG
CAAGCACTGCCCGGCATCTTCCC--ACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACCGAGCTCAGG
CTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGCGATGTCGCCGCCGGCGACTCCCAGGGGCAAGAA
GCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACACCGCGACCGCACCCCCCGTGG
CCAAGTGAGTACCAGCCCAACCCCTTCAGCCTCCCGGCTCGCTACCTTATTCTTCTTCCTGCAACTCCAAGGCCAGGGTT
CTTACATGCATGCTTG-TCTCAACTCTCGCAGGGCACAAGTTGTCGGGTGGCCGCCGGTGAGGC------------GCTG
CTTCCAGGAAGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGGCCAGCAGCAACAACACGCCGTCCGCGGCGGTGC
CGACGAGCACCAACGGCTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTCAGGAAGGTCGACATGAGGATGTAC
AAGGGCTACCGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGCCTCCAGCGG
CGGGGGCGCAAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAGACGTGCCCT
TCGAGTAAGTCTTGATTCATTTCATCACTTCTTCATCTTCGACATATATTAGGTGACTGTGAACTGAAGATCATTTTGTG
AAGCAGTGACTTATGATCTTTATTCCTACG-TTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGATCATCAAGA
GATCCGAAGCCACAGGCCTGGGATCCAAATAATGAAGACTTGAGAAGC-AAGATGATATCATGGGCTCTCT-----TTTT
TTTTTTTAC-----------------------------------------------------------------------
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-----------------------------GGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAGCCAAAAGGG
ACGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTCTTAGAAGCACA
AAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGATTACTTATC
ATCATGCATGTTTTTGCTGGGGTGCTTTCCTTCCGGTTTCCCCTTGGCTTGGCTGTGCTTTTGTATTCAAGTTGTCA-AG
TCACTTTATCATCAACACTATTA-------TGTTGTTTGTGAGCACCGCTTGTTTAT-----------------------
--------G-------------------------------TGCGGTGGATAGTGATATCTATGACGATCGAGCATTTTAA
CGACGTCCGGATGTGATTTCTGAGTATACCGCGCAACCAAAATTGGATGGATCTTCCACTTGTTTAGCTAAGACTGCAAG
CACA-----AACAAATGTGGTTCCTTTTGTATCACCGCAACATTTTAGGGCATCTTTGAATTAAACAAATTTCAAAGATA
TTATGCACGATTTCAATCTGCTTACAGAAATTGATAGACATGATATGATGAGAAAGCCTTTTGGATGTTACCTACAAACT
GATATGTAGGATTAGAAACCCGAC----AGATGCTACTTATGAGTCACTTCCCATCCGATACCAAATCTAAATTCCCATT
GGAGATTTCATATGCTATGTGGAAGAAAAAAAACACCATGGTGTGCCAATTCATGT-----ATGGTTTTCAATCCTA-TG
AGATTGAAGAAAGCCTAATATCA------CATTCCTGCCTTTTAGTAGAATCTTGCGATCTGCGGAGGCTCTCTTTGGAT
CTTAGACCTAATGACACTACAAAAGGAAGGACTACTAGTTCCATTCGAATCTTTAGCCCATGTTCCCAGAGACGTTGACT
TGAAA-------CGGAACCATGTGCCGCTGATGAGATTAAAATTGGA--
>chr5D_1
CGTTTTCTATTCTATTTCA---CTCCATTCCGGATGAAAGTCCATGATATCATCATATATCATCGCTCCATACCATACAT
GCATGATTCATCGGCCCA-------TCCGGCCGGGTTACAGGGGTGCCGGGTTGCGATCGCCGCCCATGCCGTCC-----
---CAATTCCCGATTCCCGATCGCCGCTCAGAAGCTTCCAGCCTGA--------GTGCTCAGCTACCCACACTTACGTAA
----CGGATCGAACTGAAACCCGTTGCGTTGTGCGATGGACGGG---------------GCAGACAGCCCGTTAGACATG
CCATGTGCCCCACGGAATACAATATCCGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAATTAGCTAG-T
AGGATAATCAATCAATCAGTCAGTCCAGCTCTCGATTGTTTTGTTTTGTTTAGGTATGTAGCTAAACAACTGGGAGATAC
AATACTCCATCAGCATCTATCAAGCTAGTATAGTATACTATCGTACAGCCAGGCCGATCGGCACAGCCAGCCGGCGGCGA
CGCACATCGGCATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTGCGCCGCCCG
CCCCGCCCGCGCCCGCGCCCGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCAGCCACCCCGACACCCCAG
CCTAGC-----CACACCACACC----------CAGCCCCCGCCGTGCGCTGCGCTCGATCGATCGATCGATGCACCTACG
TGT---------CCGCGTATGTCATTGTCAGCCCATGCGCGCTGGCTCTATGCCAACTTACTTACTCGCGATGCCCTTCG
-------------CCGCCTATAAAACATGGGCGCCAACCCTACCCTTGCCAAGCCAACGCAAGCAACACACACATCGTCT
TCTCCTCTCACCGAGCCAGAGCTATCACATCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCGCTAGACCAA
GCAAGCACCAAGCATCTTCGCACGTACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACCGAGCTCAGG
CTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAGAGGCAGGAA
GCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCACCCCCCGTGG
CCAAGTGAGTACCAGCCCAACCCCTTCAGCCTCCGGGCTCACTACCTTATTCTTCTTCCTCCAAGTCCAAGGCCAGGGTT
CTTACATGCATGCTTTCTCTCAACTCTCGCAGGGCACAAGTTGTCGGGTGGCCGCCGGTGAGGTCGTACCGGAAGAGCTG
CTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCAGACGAGGCCAGCAGCAACAACACGCCGTCCGCAGCGGCGC
CGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGTATGGACGGAGCGCCCTACCTAAGGAAGGTCGACATGAGGATGTAC
AAGGGCTACCGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGCTTCCAA---
CGGCGGCGCGAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAGATGTGCCCT
TCGAGTAAGTGTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGATCATTTTGTG
AAGCAGTGACTTATGATCTCTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGATCATCAAGA
GATCCGAAGCCACAGGCCTGGGATCCAAATAATGAAGATCTGAGAAGCAAAGATGATATCATGGGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAGCCAAAAGGG
ATGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTTTTAGAAGCACA
AAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGATCACTTATC
ATCATGCATGTTTTTGCTGGGGGGCTTTCCTTCCGGTTTCCCCTTGGCA----TGTGCTTTTGTATTCAAGTTGTCATAG
TCACTTTATCATCAACGCAATTATGTTGGTTGTTGTTTGTGAGCACCACTTGTTTAT-----------------------
--------GCGTTCTCAGTTCGAGTCCAATGATGTTAAGGTGCGGTGGACAGTGGTATATGCGACGATCGAGCATTTCGA
CAATGTTTTGATCTGCTGTATATGGTACAACC-------AAATTGGATGGATCTTCCACTTGTTTAGCTAAGACTGCAAA
CACAGATGCAAAACATTTGGTTTCTTTTGTATCACTGCAACATTTTAGGGCATCTTT-GATCGAAGGAATTGCAAACATA
TTGTGTATGATTTCAATATGCTTAGAGAAATTGATAGATTGGATAAGAAA------CCTTTTGGATATCACCTACAGATT
GATATGTAGGACTAGAAACCTGATACGTAGATGTTACTTGTGAGCCACCTCTCATCCGATACCAAATCGAAATTTCCATT
CGAGAGTTCATATGCTATGTAAAAAAA-CGCCATA-------GTGCCAATTCCGTTCCGACATGGTTTTCAATCCTGTTA
AGATTCTAGAGTTTCTAACATCACATTCACATTCCTGTGTTT---TAGAATCTTGCGAACCGTGGAGGCTCT-TTTGAAT
CTTAGACCTAATGACACTA------------------GTTCCATCCGAATCTTTAG-CCATGTTACCAGAGACGTTGACT
TGAAA-------CGGGACCATGTGCCGCTGATGAGATCAAAATTCGATC
>SNPs
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-------------S------------------------------------------------------------------
-------------------------S------------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------------------------------------S---------
------------------S-------------------------------------------------------------
------------S-S--------------S-SSSSS--------------------------S-----------------
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S---------------------SSSSSSSSSS------------------------------------------------
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----S------------------------S--------------------------------------------------
--------S-S---------------------------------------------------------------------
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----------------------------------------------------------------------S--------S
------------------------------S----S----------------------------------------S---
--------------------------------S-----------------------------------------------
---------------------------------------------------------S-----------S----------
-------------------------------------------------------S------------------------
---------S----------------------------------------------------------------------
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------------------------------S---------------------------------S------SSSSS----
-S------S-----------------------------------------------------------------------
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-----------------S-----------------------------S--------------------------------
----------------------S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------------------------------------S---------------S---------------
--------SS-----S---S--S---------------------------------------------------------
--------S----------S---S-------S---------------S--SS----------------------------
--------------S--------------S---------------S----------------------------------
-------------------------------------------------------------------S--------S---
---------------------------S----------------------------------------------------
---------S---------------------------------------S----------------------S-------
--------------------S-----------S---------------------S-------------------------
----SSSSSSSS-------------------------S---S-S-SSS-
>forward_270
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----------GAACTGAAACCCGTTGCGTC--------------------------------------------------
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>reverse_1280
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-------------------------------------------------------------------------------C
CCAAGTGAGTACCAGCCC--------------------------------------------------------------
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>forward_1049
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---------------------------------------------------------------------CTTCCCTACCG
CAAGCACTA-----------------------------------------------------------------------
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>reverse_2558
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-----------------------------------------------------------------------------AGG
ATGTTTAGGTGCGGTGG---------------------------------------------------------------
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