>input_sequence_67531
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--------------ATGTCGTCTGCCTCTACGCCCACGCCCACGGCCGTGGCGCGGCCGGCCGGGAGGTACGCCGTGTAC
GTCGCGGCCGTGCCGCTGAGGGGCCCTCAGGGTCCGGCCCAGGCCCTGATGTCTTCGGCCTACTCGCTGGGTCTGTGGGA
CCTTCAGCACTTCATGGTGCTCCTCCGGCCCGACCCTGCCCGAACCCGAACCC------AGGTGAG------------GG
AAGGAAATCCATCCGT-CCTTTTCGACTCCGCAAGATGTTCAGAGGGCGTTTGGCTTGGCTGGCTTGCAGGTGCAGGAGC
CGGAGCCGTCGTTGGTGTTCGATTTCCAGCCTCTCGACCCGGAGGATGCTCTCGCCGCCTTCTCCGTGCTCTCGCGGAGC
AAAATACCGGGTAGCTAAGCCGCCGGCGTCGGCCTCTCTGCCTGCTTGCTTGGAATTTTCTTTTTCTTTGCC---AAGAA
ACGGAAGCAGAATTCTTTAGTGATTCATCTTGTCTGCGACGACGGGCGGACAGGGGTGGTTCGGAGGAGAACGCTGCGGC
GGATCCCTGACAGGAGGAGCTGGTTCGTCGGCCTCAGCG------ACGGCGGCGCCGCCGACGCCGCCGAGAGGTTCAGC
GAGCGATGGCCGACCGACCTGGTCGTCGGGAACCACGACTGCCGAGACTACACCAACGGTTGGCAGCCACAATTGCCGCT
TTACT----TACACA---ACATTGCTGCCATCTCTTCTTTTCATCATCTCAATCTTTTCTTTCTC----TGTGTGTGTGC
GC--GCATGATCTCCTTCGCAAGGGCTGGTGGAAGTCTTGACAGGACAAAAACGCGTCCTCGACTCGCTGAGATCAGCAG
GCCGCCAATGA---------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G200500
CCAAGTCCGTTTACCCAGAGTCGAGCAATTTCCTGATAAACCAGACGAACCCTCTCGTCAAGTCCCTGCAGTCTGCTGGT
CTTCCAGTCTATGTGTATCTGCTGAGGAACGAGTTCTTTTCTCAACCGTACGACTTCTTCTCAGACGCCACGTCACAGAT
CAACGCCCTTGTGCACAAAGGGGGAGAGGGAGGCGGAGTGGATGGACTCATCACCGATTTCCCCGGGACGGCTCACAGAT
ACAAATGTGCGTGC-----------------CCAACATTTTTCATCCAGTTCACCATG---------------CATGTAG
TGTTATCTTGTGAGT-------GAGTTCTTCTTGTGTTTGCGCAGTGAACTCGTGCAGGAACATGGGGGACAAGACGCCC
TACTACATGCTGCCTCCCCAGCGCGGCGGCCTCCTTGGGGTCATACAGGATAAAGCAGCATTGCCACCAGCAATGGCCCC
AGAGCCGGTGTTGACTGTCTCCGACGTGGCGGAGCCGCCCCTTCCTCCTGTGAGCAACACCACAGCTCCAGCGCCCTCCC
ACGCCGCCGTCGATGTCTCCGTCTCGATCCCGATCACTGTGGCGGTGCTAGTGCTATGCGCTTCTCTGCTTATCTGAGGA
CCACTAAGTCATTCTTTTAAT-GCCACCCGTTCTATTCT---ATGTAGCGAGCGATTCGTTTTTCCTTTTGCTTTGGGTC
TCATTTGGGGTGGTGGATGTTGAGGTTAAATG----ATGATTCATGCCTGGATGGTGGCACTTACTTATGTCCCTAGTTA
AAACAACATTCTGGTAAATACC-------ACTCTATGATTGTTAAAGAGGAGAAGTGATGCATTCAGCTCCCAAGAGTCT
AGAGTTGCGGTCCCAGACCAGATTTTGATGTGGGAACTCAGAGAGAGTACCAGATCGGACGGCCGTCAGATTGACATCTG
ACGGCGAGATGCTCTTATTGCGCCTATGGCCGCCGGTTGCTTGTGTCGCCACGGCCACAGCCGTTTTGGTTTGTCTCCAA
TGATCCAATCTCGAATGTCGTCTGCCTCTACGCCCACGCCCACGGCCGTGGCGCGGCCGGCCGGGAGGTACGCCGTGTAC
GTCGCGGCCGTGCCGCTGAGGGGCCCTCAGGGTCCGGCCCAGGCCCTGATGTCTTCGGCCTACTCGCTGGGTCTGTGGGA
CCTTCAGCACTTCATGGTGCTCCTCCGGCCCGACCCTGCCCGAACCCGAACCC------AGGTGAG------------GG
AAGGAAATCCATCCGT-CCTTTTCGACTCCGCAAGATGTTCAGAGGGCGTTTGGCTTGGCTGGCTTGCAGGTGCAGGAGC
CGGAGCCGTCGTTGGTGTTCGATTTCCAGCCTCTCGACCCGGAGGATGCTCTCGCCGCCTTCTCCGTGCTCTCGCGGAGC
AAAATACCGGGTAGCTAAGCCGCCGGCGTCGGCCTCTCTGCCTGCTTGCTTGGAATTTTCTTTTTCTTTGCC---AAGAA
ACGGAAGCAGAATTCTTTAGTGATTCATCTTGTCTGCGACGACGGGCGGACAGGGGTGGTTCGGAGGAGAACGCTGCGGC
GGATCCCTGACAGGAGGAGCTGGTTCGTCGGCCTCAGCG------ACGGCGGCGCCGCCGACGCCGCCGAGAGGTTCAGC
GAGCGATGGCCGACCGACCTGGTCGTCGGGAACCACGACTGCCGAGACTACACCAACGGTTGGCAGCCACAATTGCCGCT
TTACT----TACACA---ACATTGCTGCCATCTCTTCTTTTCATCATCTCAATCTTTTCTTTCTC----TGTGTGTGTGC
GC--GCATGATCTCCTTCGCAAGGGCTGGTGGAAGTCTTGACAGGACAAAAACGCGTCCTCGACTCGCTGAGATCAGCAG
GCCGCCAATGAGGCCGCGCCATCATGGGGTGGGCCGGACTGCTTTCTTCT-ACCTTTCCTTCTTTCTGTTGCACTAGCGT
TGTTTACTGAATCTTGCTCCAGACATCGTCTCGAAATATTCGTCATGTATTAGTAATTTTTATTATGTATACATATGCGT
CAATGGTG---CCATATGGTTGAAAGAGACAGGCTTGGATGATTAGGTTAGGTTGATTCACTCTTCTGTTGCTTGTCCGA
CGGAGCTCATCATGGTTCTTGTGTTACTGTTTTCCAGAGATAAGTTGCAATTTC-TTTAAGGAGAAATAAGTTGCCGTTT
CACTTTGCAGAT-------ATATGAGGATTCCGACTGCTCACGCTCATCTGTGAATTCTTCTAATCCTAGACCAAGAAAA
CGT-----------------------------------------------------------------------------
------ACTGCCTGCAACTACTAATGAAACGCATCAGCCTTCTCGGACAAAGGTGTGGCATAAATAAGAAATGCACTTTG
AGGAATTCCTCGGCTGGAGCTTGAAGCAAAAGTAG-AAAAACTAATCAATGTAACCAGGTGCTGGTTGCTG----AGTAT
CTGGTAATTTGCTGTCAGTAGTTCTTTTACACATATTAATTTGCTATCAGTAGTAATTGAAGCAAAATGTTTACTAACAA
AATGGAGGAAGCAATATCCAGTAGCACTTGGATTATAT---CATATGGCTTCAGCAAACAAACACAAATTTCTTCTGGAT
TCTGTTTTCGAAATGTGTTCCTAAA----------TGAGAGACGTTTTTGCAGTTTCAATTGAACTGATTTAAGCTGCAA
AAACGGCTTACATTTAGAAACACAGGGTGCAATTTCTTATATTCTTCTCCATTAGAAGTGGCAACTATACA----ACATC
ACCCACGACAATGAAAGCTCAAGCTTTTTGTGCATCTACCTGCTGACCCTAAGACCCAATGCCTTCCAAACAATGGCAAG
TTGGTGTCTCAGGACATGATGAGCAAGTGCCATCGTTGGCTGTCCACCATTGGGCTCTGGCCCCACCTTCAGTTTCAAGA
AACAACTA
>chr6D_2
-CAAGTCCGTTTACCCAGAGTCGAGCAATTTCCTGATAAACCAGACGAATCCTCTCGTCAAGTCCCTGCAGTCTGCTGGC
CTTCCAGTCTATGTGTATCTGCTCATGAACGAGTTCTTTTCTCAACCGTATGACTTCTTCTCAGACGCCACGTCACAGAT
CAACGCCCTTGTGCACAAAGGGGGAGAAGGAGGCGGAGTGGATGGACTCATCACCGATTTCCCGGGGACGGCTCACAGAT
ACAAATGTGCGTGCTCTTGTTGCCTTTGTAACCAACATTTTTCATCCAGTTCACCATGTAGAAGTAGTAGTATCATGTAG
TGAACCCACCCAACCCAATGAAGAATTCTTCTTGTGTTTGCGCAGTGAACTCGTGCAGGAACATGGGGGACAAGACGCCC
TACTACATGCTGCCTCCCCAGCGCGGCGGCCTGGTTGGGGTGATACAGGATAAAGCAGCATTGCCACCAGCAATGGCCCC
AGAGCCGGTGTTGACTGTCTCCGACGTGGCGGAGCCGCCCCTTCCTCCGGTGAGCAACACCACAGCTCCAGCGCCCTCCC
ACGCCCCCGTCGAGGTCTCCGTCTCGATCCCGATCACTGCGGCGGTGCTAGTGCTATGCGCTTCTCTGCTTATCTGAGGA
CCACTA-GTCATTCTTTTTTTGGCCACCCGTTCTATTCTATTATGTAGCGAGCGATTCATTTTTCCTTTTGCTTTGGGTC
TCATTTGGGGTGGTGGATGTTGAGGTTAAATG----ATGATTCATGCCTGGATGGTGGCACTTACTTATGTCCCTAGTTA
AAACAACATTCTGGTAAATACGTACTCCTACTCTATGATGGTTAAAGAGGAGAAGTGACGCATTCAGCTCCCAAGAGTCT
AGAGTTGCGGTCCCGGACCAGATTTTGATGTGGGAACTCAGAGAGAGTACCAGATCGGACGGCCGTCCGATTGACATCTG
ACGGCGGGATGCTCTTATTGCGCTCATGGCCGCCGGTTGCTTGTGTGGCCACGGCCACAGCCGGTTTGGTTTGTCTCCAA
TGATCCAATCTCGAATGTCGTCAGCCTCTACGCCCACGGCCGTGGCGGTGGCGCGGCCGGCGGGGAGGTACGCCGTGTAC
GTCGCGGCCGTGCCGCTGAGGGCCCCTCAGGGTCCGGCCCAGGCCATGATGTCTTCGGCCTACTCGTTGTGTCTGTGGGA
CCTTCAGCACTTCATGGTGCTCCTCCGGCCCGACCCTGCCCGAACCCCAACCCGAGCCCAGGTGAG------------GG
AAGGAAATCCTTCCGT-CCTTTTCGGCTCGGCAAGATGTTCAGAGGGCGTTTGGCTTGGCTGGCTTGCAGGAGCAGGAG-
--------TCGTTGGTGTTCGATTTCCAGCCTCGCCACCCGGAGGATGCTCTCGCCGCCTTCTCCGTGCTCTCGCGGAGC
AAAATACCGGGTAGCTAAGCCGCCGGCGCCGGTCTCTCTGCCTGCTTGCTTGGAATTTTCTTTTTCTTTGTCAGGAAGAA
ACGGAAGCAGAATTCTGTAGTGATTCATCTTGTCTGCGACGACGGGCGGACAGGGGTGGTTCGGAGGAGAAGGCTGCGGA
GGATCCCTGACAGGAGGAGCTGGTTCGTCGGCCTCAGCG------ACGGCGACGCCGCCGACGCCGCCGAGAGGTTCAGC
GAGCGGTGGCCTACCGACCTGGTCGTCGGGAACCACGACTGCCGTGACTACACCAACGGTTGGCAGGCACAATTGCCACT
TTACTTACTTACACA---ACAT---TGCCATCTCTTCTTTTCATCATCTCAACCTTTCCTCTCTC----TCTCTCTCTCT
GTGTGCATGATCTCCTTCGCAAGGGCTGGTGGAGGTCTTGACAGGACAAAAACGTGTCCTCGACGCGCTGAGATCAGCAG
GTCGCCAATGAGGCCGCGCCATCGTGGGGTGGGCCGGACTACTTTCTTCT-ACCTTTCCTTCTTTCTGTTGCACTAGCGT
TGTTTACTGAACCTTGCTCCAGACA-CGTCTCAAAATATTCGTGATGTACTAA------TTTTTATGTATACATATGCGT
AAATGGTG---CCATATGGTTGCAAGAGACAGGCTTGGATGATTAGGTTAGGTTGATTCACTCTTCTGTTGCTTGTCCGA
CGGAGTTCATCATGTTTCTTGTGTTACTGTTTTCCAGAGATAAGTTGCAATTTC-TTTAAGGAGAAATAAGTTGCCGTTT
CACTTTGCACATGGTTGATATATCAGGATTCCGACTGCTCTCGCCCATCTGTGAATTCTTCTAATCCTAGACCAAGAAAA
CATACTGCCTGCAACTACTTTTTTTGGAAATGGAGGTATACCCCCGGCCACTGCATCATGATGATACAGCTCGCAAACGG
AGCAAAACTGCCTGCAACTACTAATGAAACGCATCAGCCTTCTCGGACAAAGGTGTGGCATAAATAAGAAATGCACTTTG
AGGAATTCCTCGGCTGGAGCTTGAAGCAAAAGTAG-AAAAACTAATCAATGTAACCAGGTGCTGGTTGCTG----AGTAT
CTGGTAATTTGCTGTCGGTAGTTCTTTTACACATACTAGTTTGCTATCAGTAGTAATTGAAGCAAAATGTTTACTAACAA
AATGGAGAAAGGAATATCCAGTAGCACTTGGATTATAT---TATATGGCTTCAGCAAACAAACACAAATTTCTCCTGGAT
TCTGTTTACGAAATGAGGGAGAGGGACCCCTTGACTGAGAGACGTTTTTGCAGTTTAAATTAAACTGATTTAAACTGCAA
ATACGGCTTACATTTAGAAACACAGGGTGTAATTTCTTATATTTTTCTCCATTACAAGTGGCAACTATACACAGTACATC
ACCCACGACAATGAAAGCTCAAGCTTTTTGTGCATCTCCCTGCTGACCCTAACACCCAATGCCTTCCAAACAACGGCAAG
TTAGTGTCTCATGACATGATGA-CAAGTGCCATCGTTGGCTAGCCACCCTTGGGCTCTGGCCCCACCTTCAATTTCAAGA
AACAA---
>chr6B_2
-CAAGTCCGTTTACCCAGAGTCGAGTAATTTCCTGATAAACCAGACGAACCCTCTCGTCAAGTCCCTGCAGTCTGCTGGC
CTTCCAGTCTATGTGTACCTGCTGAGGAACGAGTTCTTTTCTCAGCCGTACGACTTCTTCTCAGACGCCACGTCACAGAT
CAATGCCCTTGTGCACAAAGGGGGAGAGGGAGGCGGAGTGGATGGACTCATCACCGATTTCCCGGGGACGGCTCACAGAT
ACAAATGTGCGTGCTCTTGTTGCCTTTGTAACCAACATTTTTCATCCCGTTCACCATGGTACATGCTGGAGTGA------
------------AGT-------GAATTCTTCTTGTGTTTGCGCAGTGAACTCGTGCAGGAACATGGGGGACAAGACGCCC
TACTACATGCTGCCTCCCCAGCGCGGCGGCCTGGTTGGGGTCATACAGGATAAAGCAGCATTGCCACCAGCAATGGCCCC
AGAGCCGGTGTTGACTGTCTCCGACGTGGCGGAGCCGCCCCTTCCTCCGGTGAGCAACACCACACCTCCAGCGCCTTCCC
ACGCCGCCGCCGATGTCTCCGTCTCGATCCCGATCACTGCAGCGGTGCTAGTGCTATGCGCTTCTCTGCTTATCTGAGGA
GCACTA-ATCATTCTTTTTTT-GCCACCTGTTCTATTCT---ATGTAGCGAGCGATTCATTTTTCCTTTTGCTTTGGGTC
TCATTTGGGGTGGTGGATGTTGAGGTTAAATGTTGGATGATTCATGCCTGGATG--------------------------
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>chr6B_775
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---------------------C-------ACTCTATGATTGTTAAAGAGAAGAACTGATGCATTCAGCCCCCAAGAGTCT
AGAGTTGCGGTCCCAGACCAGATTTTGATGTGGGAACTCAGAGAGAGTTCCAGATCGGACGGCCGTCCGATTGACATCGG
ACGGCGAGATGCTCTTATTGCGCCTATGGCCGCCGGTTGCTTGTGTGGCCACGGCCACAGCTAGGG-----------CAA
TGATCCAATCTCGAATGTCGTCTGCCTCTACGCCCACGGCCGTGGCGGTGGCGCGGCCGGCGGGGAGGTACGCCGTGTAC
GTCGCGGCCGTGCCGCTGAGGGCTCCTCAGGGTCCGGCCCAGGCCCTGATGTCTTCGGCCTACTCGTTGGGTCTGTGGGA
CCTTCAGCACTTCATGGTGCTCCTCCGGCCCGACCCTGCCCGAACCCCAACCCGAGCCCAGGTGATGTGAGGCCAGCCGG
AAGGAATCCGTCCTCTCCCTTTTCGACCCCGCAAGATGCTCAGAGGGCGTTTGGCTTGGCTGGCTTGCAGGAGCAGGAGC
AGGAGCCGTCGTTGGTGTTCGATTTCCAGCCTCGCCACCCGGAGGATGCTCTCGCCGCCTTCTCCGTGCTCTCGCGGAGC
AAAATACCGGGTAGCTAAGCCGCCGGCGCCGGCCTCTCTGCGTGCTTGCTTGGGATTTTCTTTTTCTTTGTCAAGAAGAA
ACGGAAGCAGAATTC-----TGATTCATCTTGTCTGCGACGACGGGCGGACAGGGGTGGTTCGGAGGAGAAGGCTGCGGA
GGATCCCTGACAGGAGGAGCTGGTTCGTCGGCCTAAGCGACGGCGACGGCGACGCCGCCGACGCCGCCGAGAGGTTCAGC
GAGCGCTGGCCGACCGACCTGGTCGTCGGGAACCACGACTGCCGAGACTACACCAACGGTTGGCAGGCACAATTGCCGCT
TTACT----TGCACATTGACAT---TGCCATCTCTTCTTTTCATCATCTCAATCTTTTGTTTCTCTGTGTGTGTGTGTGC
GC--GCATGATCTCGTTCGCAAGGGCTGGTGGAGGTCTTGACAGGACAAAAACGTGTCCTCGACGCGCTGAGATCAGCAG
GCCGCCAATGAGGCCGCGCCATCGTGGGGTGGGCCGGACTGCTTTCTTCTTACCTTTCCTTCTTTCTGCTGCACTAGCGT
TGTTTACTGAATCTTGCTCCAGACATCGTCTCAACATATTCGTGATATAC------------------ATACATATGCGT
AAATGGTAGTACCATATGGTTGAAAGAGACAGGCTTGGATGATTACGCCAGGTTGATTCACTCTTCTGTTGCTTGTCCGA
CGGAGTTCATCATGCTTCTTGTGTTACTGTTTTCCAGAGATAAGTTGCAATTCCTTTTAAGGAGAAATAAGTTGCCGTTT
CACTTTGCAGATGGTTGATATATCAGGATTCCGACTGCTCTCGCCCATCTGTGAATTCTTCTAATCCTAGACCAAGAAAA
CATACTGT------------------------------------------------------------------------
-----------CTGCAACTACTAATGAAACGCATCAGCCTTCTCGGACAAAGGTGTGGCATAAATAAGAAATGCACTTCG
AGGAATTCCTCGGCTGGAGCTTGAAGCAAAAGTAGGAAAAACCAATCAATGTAATCAGGTGCTGGTTGCTGAGTGAGTAT
CTGGTAATTTGCTGTCAGTAGTTCTTTTACACATATTAATTTGCTATCAGTAGTAAGTGAAGCAAAATGTTTACTAACAA
AATGGAGGAAGGAATATCCAGTAGCACTTGGATTATACTAGTATATGGCTTCAGCAAACAAACACAAGTTTCTTCTGGAT
TCTGTTTTCGAAATGTGTTCCTAAA----------TGAGAGATGTTTTTGTAGTTTAAATTAAACTGATTTAAGCTGCAA
AAACGGCTTACATTTAGAAACACAGGGTGTAATTTCTTATATTCTTCTCCATTAGAAGTGGCAACTATACACAGTACATC
AC-------------------------------ATCTCCCTGCTGACCCTAACACCCAATGCCTTCCAAACAATGGCAAG
TT--------AGGACATGATGACCAAGTGCCATCGTTGGCTGGCCACCCTTGGGCTCTGGCTCCCCT-------------
--------
>SNPs
S------------------------------------------------------------------------------S
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---------------------------------------------------------------S----------------
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--SSSS-SSSSS------------S-------------------------------------------------------
--------------------------------SS----------------------------------------------
------------------------------------------------S-------------------------------
---------------------------------------S----------------------------------------
------S-----------SS--------------------------------------S---------------------
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-------------------------------------------------------------------S------------
----------------------------------------------S----------------S----------------
--------------------------------------S--SS---S--------------S------------------
----------------------S-------------------------------------------S-------------
-----------------------------------------------S--------------------------------
----------S------------------------------------------------------------S--------
S--------------------------------S-S--------------------------------------------
----------------------------S-----------------------------------------S---------
----------------S------------------------------------------------------S-------S
---------------------------------------------------S----------------------------
-----S------------------------------------------------------------S-------------
----------------------SSS-------------------------------------------------------
---------------------------------S--------------------S---------S---------------
-----------------------S--------------------------------------------------------
--------------------------------S----------S-----S--SSSSSSS--S------------------
S-------------------------------------------------------------------------------
-----S--------S-----------------------------------------------------------------
-----------------------S----------------S---S-----------------------------------
-S------------------------------------------------------------------------------
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-----------S-----------------------------S--------------------------------------
--------------------------------------------------------S----S------------------
-----------------------------S--------------------------------------------------
-------------------------------------S--------------S---------------------------
--S-------------------S-------------------S-----S----------------------S--------
-----SSS
>forward_600
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--------------------GTCTCGATCCCGATCACTGT----------------------------------------
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>reverse_2264
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-----------------------GAGGATTCCGACTGCTCACG-------------------------------------
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