>input_sequence_67470
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----------------------------------------ATGGATGAGGTTGTTTTGGCAGGGATGAAAAGGTGTGAAA
AAAGGATTTCTTCTCTACTAAGAGGTGCACCGACACAACCAGCGCCCACACACGCGCAGCAGCAGCTGATGATACTCGGG
ACACCAATTGTAAATGGCCCATGTGCAGCCATCTCACAACTCGCAGGAAGCAGGATATTGGGCCTTGGTGATCTAGGGGT
GCAAGGTATTGACATTGCTATAGGGAAGCTGGATTTATATGTTGCTGCTACTGGAATAAATCCTCAGAAGGTATGCTTTT
GTTGTTCCTAAGGAAACTGTTAGACTTACCTTGTTCTCCATCTTCCATTT--TTTACATCTATATTTTCATATTTGACAT
CTCTAATTTCAAATAACTATAATTTGGTATTTGACCTACATGGATTTTATTGACAAACAAAAAATAAAGTTTTGCTACTT
AATCTGATTGTGCCAATCAACCTTCTCTCATAATAATTCAGGGAGATAAAAG-----TTCTTTTAGAATGTTACCA----
--------------CTGAACCCAGAT-AATGATGTTTGCCAAACTGAAGCTTCAAATACGAGACA--ATGATCACGTTTG
TGTTGCGTAACCTTACAACGCTGA------TTTCTTAGATGTTATGAAGTTTCAAAGTGTTCTACTGCTA-------CCT
ACTCACTTTGTTTCTTTTGTATAAGGCATATTTTGATTTGTTGAAATAATGCTTTAAATAATAAATACTCTATCAATAGG
TGGTGCATGTGAATAAGTTAATATTGGATTCATTTCTTTGGGGAGCTAAGCCATGTATTTGGAATTTCAGTAACGGAGTT
AGTTTGTGTAAAATAGATAAATGTCTGCTAGCTTCTTAG-----------------------------------------
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>chr4A_1_TraesCS4A01G135300
AAACTGTCCCCATCATTAATCTTTTGAGAAATGTATGTCACACGAGTCATCAGCCACACTAACATAATTAAATTCTTTGA
CCTTGTGTAGTCTACGTTCAAGAAGACGCTTCCAGAACAAAGGAAAATGACGAATGGCAAATTTATACTGATACTTCTCT
GGGCAAATGGTCTTTCCCCCTGAAGTGATAATACAAGCTGATAATCTGATGTTAAACTGATGGTTGTATTATTTGTAGCA
ATTCTTCAAATTTTGATGTTTATGTGTTTGTTTGGACGCGCAGGTGCAAATGATTTTAGCTATTAGGTTTAGATTGTAGG
TATTGTTGGAAAATAATTCTTGGGTATGTCTATATGCCTGTATGTACGTTCTCATTTGAAACAAATATACTTCATTACCT
ATTATTTTTCCTCCTATTTAAAGATCACAATGCATGTCTCCATCCGATTATTCCCTCCTTCATTAACTTGAAGTATTGCT
AACTAGATTTTGTGTGTGCAGGAGGTTAGCCGCCTTATGATCAAACCTGGCTCTGTTCAACAGTGTCCGGTATGCACTTC
TTGGCTTCTCTCTGTTTCTATATCTGTTTTTTTTGTTGTTTCAATTCAGATCAAACCAATAGCCTTTGCATACAAGTTGG
AGAGGTTATTTCTCGCGTGGAGGTCTTTTCCCTTAAGGCACTACATTTTTTCAGTGCCCCAAGCACTTTCCTCATGTTTG
CGGGTTGTGACCAGGAAATTTTACACCACCGAGATTATGATTAGGGCAGAGCAGCATCCGGTGGCGAGGTTGGAAAAGAG
AAGGAGAGAGATCCGTGATTGGGTAATGACCCGCTGTGGTTGTGGCCAAGGAGCCAGCTCGGATTTGTTTGCCGGTGCGT
GTGTCGGTTGATTTGGCCGAGAAAGATGCGGCGGGCAAAGCAGCAGGGAAGAGGATCTGCCGCTTGACCTTCCCGGCTCG
ATCTGATCCTTAGGAGAGAAGGCATAGGAGGGAAGGGAAGATGGATGAGGTTGTTTTGGCAGGGATGAAAAGGTGTGAAA
AAAGGATTTCTTCTCTACTAAGAGGTGCACCGACACAACCAGCGCCCACACACGCGCAGCAGCAGCTGATGATACTCGGG
ACACCAATTGTAAATGGCCCATGTGCAGCCATCTCACAACTCGCAGGAAGCAGGATATTGGGCCTTGGTGATCTAGGGGT
GCAAGGTATTGACATTGCTATAGGGAAGCTGGATTTATATGTTGCTGCTACTGGAATAAATCCTCAGAAGGTATGCTTTT
GTTGTTCCTAAGGAAACTGTTAGACTTACCTTGTTCTCCATCTTCCATTT--TTTACATCTATATTTTCATATTTGACAT
CTCTAATTTCAAATAACTATAATTTGGTATTTGACCTACATGGATTTTATTGACAAACAAAAAATAAAGTTTTGCTACTT
AATCTGATTGTGCCAATCAACCTTCTCTCATAATAATTCAGGGAGATAAAAG-----TTCTTTTAGAATGTTACCA----
--------------CTGAACCCAGAT-AATGATGTTTGCCAAACTGAAGCTTCAAATACGAGACA--ATGATCACGTTTG
TGTTGCGTAACCTTACAACGCTGA------TTTCTTAGATGTTATGAAGTTTCAAAGTGTTCTACTGCTA-------CCT
ACTCACTTTGTTTCTTTTGTATAAGGCATATTTTGATTTGTTGAAATAATGCTTTAAATAATAAATACTCTATCAATAGG
TGGTGCATGTGAATAAGTTAATATTGGATTCATTTCTTTGGGGAGCTAAGCCATGTATTTGGAATTTCAGTAACGGAGTT
AGTTTGTGTAAAATAGATAAATGTCTGCTAGCTTCTTAGGCATTTAAAAAAAAACGAATCCCTTGCTACATATACCAGGG
TGTTTATATCCAGGTACAGCCTTGGCTTTGTTTGTAAAGAAGCAAGTAGACATTCTACTTTTGTGTAAGCTGAATATATG
CTTATCGGTTTCCATCTAATGGCAGCTCTCTCTCCCTTTTCCATTTATCTATTTTTGTAGATGGTAGAGCAACCTTATTA
TACATACACACTGAAATTGATTCTGTTGAAAGCTTATTCACATTTTCTTTCGTTCTTATTGATCCATCAAGGAATGGAGA
TCATATACTCTTATAACATACACTCATATTTATGACTTTTGTAAGCGCCGTGTCCCTCCGGATGCGTCTCTTTGGAGACT
ACAAATATGTAACTTGTCATCATTAATAGACAGTTTTCAATACTATCGATTGTCTCTCGTTTTCTTTCAACACGTTATCA
GCACATGCG-----------------------------------------------------------------------
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----------------------CCTCCCGAGCGGAGGCG-----------GTCGGCTGGCTGATGCGGCCCCTCTCCGAC
GGCACCGATGTACGGTGAGCCGCAGGCCTGGGAGGCTTGGTGCCCATGCGCCTGTCCACGCCGTGCTGGGGTGCTTCGCG
CTAGTGTGACAGCTGGCTGTGGCGGAGGTTGGTGGTGGTGGTGCCGACGGCCGCCGCTTGAGTCGGATTGGGGAAGATTA
GTCGATGGGAACGAGAGATCAGAGATGTCCCGTTCCGGAAC----GATGGGCTGTTGAAAAGCCACCAAGCGAGGCCTAG
TTGGGCACTAGCCCATGCTTTTTTTTGCGAACTCAAAAACTTGTATTACTCAATCCTAGTATCAATACAATCCTCAGCAA
CGACCTCCAAAACTTCAGGAGGACCTGACCCTAACCAAGTCATAGTACGATTATTAGAACGGCCAAAATACGCTAGCTTA
TCACTCGCCTTATTCTGTGAACGAGCGATATGAGTAATACAAGCTTGATGATGGTTTAGTAAAACCCTAATCTCATTAAC
CAACGACGAATAAAGTGAATGATCTAC
>chr2A_1166
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---------------------------------------------GGAAGCAGGATATTGGGCCTTGGTGATCTAGGGGT
GCAAGGTATTGGCATTGCTATAGGGAAGCTGGATTTATATGTTGCTGCTGCTGGAATAAATCCCCAGAGGGTATGCTTTT
GTTACTCCTTAGGAAACTGTTAGACTTACCTTGTTCTCTATCTTCCATTTTTTTTACATCTATATTTTCATATTTGATAT
CTCTAATTTCAAATAACTATAGTTTGATATTTGAGTTACACGGATTTTATTCACAA---CAAAATAACGTTTTGCTACTC
AATCTGATTGTGCCAATCAGCCTCTTCTCATAATAATTCAGGGAGATAAAAT-----TTCTTTTAGAATGTTATCATTTT
GGCTTGCTTTTGTACTGAACCAAGATAAATGATGTTTATCAAGCTGAAGCTTCAAATACGACTCTTGATGATCGCGTTTG
TGTTGCATGACCTTACAGCTACAGCGCTGGTTGCTTAGATATTATGAAGTTGCAAAGTGTTCTACTGCTATATATTTCCT
ACTCCCTCCGTTTCTTTTG--TAAGACATATTTTGATTTGTTCAGATAATGCTT-GAATAATAAGTACTCTATTAATAGG
TGGTGCATGTGAATATGT--------------------------------------------------------------
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>chr2D_1166
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---------------------------------------------GGAAGCAGGATATTGGGCCTTGGTGATCTAGGGGT
GCAAGGTATTGGCATTGCTATAGGGAAGCTGGATTTATATGTTGCTGCTGCTGGAATAAATCCCCAGAGGGTATGCTTTT
GTTACTCCTTAGGAAACTGTTAGACTTACCTTGTTCTCTATCTTCCA--TTTTTTACATCTATATTTTCATATTTGATAT
CTCTAATTTCAAATAACTATAGTTTGATATTTGAGCTACACGGATTTTATTCACAA---CAAAATAACGTTTTGCTACTT
AATCTGATTGTGCCAATCAGCCTCTTCTCATAATAATTCAGGGAGATAAAATTTCTTTTCTTTTAGAATGTTATCAGTTT
GGCTTGCTTTTGTACTGAACCAAGATAAATGATGTTTATCAAGCTGAAGCTTCAAATACGACTCTTGATGATCGCGTTTG
TGTTGCATGACCTAACAGCTACAGCGCTGGTTGCTTAGATATTATGAAGTTGCAAAGTGTTCTACTGCTATCTATTTCCT
ACTCGCTCCGTTTCTTTTG--TAAGACATATTTTGATTTGTTCAGATAATGCTT-GAATAATAAATACTCTATTAATAGG
TGGTGCATGTGAATATGT--------------------------------------------------------------
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>chr2B_1166
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---------------------------------------------GGAAGCAGGATACTGGGCCTTGGTGATCTAGGGGT
GCAAGGTATTGGCATTGCTATAGGGAAGCTGGATTTATATGTCGCTGCTGCTGGAATAAATCCCCAGAGGGTATGCTTTT
GTTATTCCTTAGGAAACTGTTAGACTTACCTTGTTCTCTATCTTCCA--TTTTTTACATCTATATTTTCATATTTGATAT
CTCCAATTTCAAATAACTGTAGTTTGATATTTGAGATACACGGATTTTATTCACAA---AAAAATAACGTTTTGCTACTT
AATCTGATTGTGCCAATCAGCCTCTTCTCATAATAATTCAGGGAAATAAA------TTTCTTTTAGAATACTACCAGTTT
GGCTTGCTTTTGTACTGAACCAAGATAAATGATGTTTATCAAACTGAAGCTTCAAATAAGAGTCTTGATGACCGCGTTTG
TGTTGCATGACCTTACAACTGCAGCGCTGGTCGCTCAGATATTATGAAGTTTCAAAGTGTTCTACTGCTATCTATTTCCT
ATTCACTCCGTTCCTTTTG--TAAGACATATTTTGATTTGTTCAGATAATGCTTTGAATAATAAGTACTCTATTAATAGG
TGGTGCATGTGAATATGT--------------------------------------------------------------
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>chr5A_2152
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--------------------------------TGACTTTTGTAAGCGTGGTGTCCCTCCGGATGCGTCTCTTCAGAGACT
ATAAATATGTAACTTGTTATCATCAATAGACAGTTTTCAATACTATCGATTGTCTCTCGTTTTCTTTCAACACGTTATCA
GCACGCTCTTAGCCCAGAGCGATTTGGCCGAGAGGGAAGCGACGACGGAGCGCCTGGAGGTCCTCGACCTCGGCTCGTCG
ATGCAACCGGCGAGCCCCCCTCACACGCGCGGCGCCCGCGCGCCCGCGCTACCGAGCCATGCGTCCTACCCGCTGGCTCC
CGGCAGCCAACAACCATGGCCACGCACGGCGGGGCGCGTTGCCCGGCACAGGTGGTCGACCAGCGGCAACGCCCTCTGAC
AAGCCCGTGCATGGAGCGGTTCCCTTGCCCGCCCATGGAGGCAGCAGCCTCGATGCGGCCTACCTCTGGAGCACACAACT
CTCACCCTGCGCGCGTAGGCGCTCGGGCCAGCACGCCCTCCTCGGCATCGCCTGGCGCAGCCCTGACCGGCCTCCAAAGG
CGGCGCGCGACAGCGGCGGCGCCCTCCCGAGCGGAGGCGGCGCCAGCGACGTCAGCTGCCTGACGCGGCCCCTCTGCGAC
GGCACCGATGTATGGTGAGCCGCAGGCCTGGGAGGCTTGGCGCCCATGCGACTGTCCACGCCGCGCTGGGGTGCTTCGCG
CCAGTGTGGCAGCCGGCTGTGGCGGAGGTTGGTGGTGGTGGTGCCGACCGCCGCCGCTTGAATCGGATTGGGGAAGATTA
GTCGATGGGAACGAGAGATCAGAGATGTCCCGTTCCACTTGTTCGGATGGGCTGTTGAAAAGCCACCAAGCGAGGGCTAG
TTGGGCACTAGCCCATGCTT------------------------------------------------------------
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>chr2A_2153
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---------------------------------GACTTTTGTAAGTGTCGTGTCCCTCCGA--------CTTCAGAGACT
ATAAATATGTAACGTGTCATCATCGATAGACAGTTTTCAATACTATCGATTG---------TTCTTTCAACACGTTATCA
GCACGCTCTTAGCCTAAAGCGATTTGGCCGAGAGGGAAGCGACGACGGAGCGCCCGGAGGTCCTCGACCTCGGCCCGTCG
ATGCAACCAGCGAGCCCCCCTCACACGCGTGGCGCCCGCGCGCCCGCGCTACCGAGCCATGCGTCCTACCCGCTGGCTCC
CGGCAGCCAACAACCATGGCCACGCACGGCGGGGCGCGTTGCCCGGCCCAGGTGGTCGACCAGCGGCAACGCCCTCTGGC
AAGCCCGTGCGTGGAGCGGTTCCCTTGCCCGCCCATGGAGGCAGCGGCCTCGATGCGGCCTACCTCTGGAGCACACGACT
CTCACCCTGCGCGCGTAGGCACTCGAGCCAGCACGCCCTCCTCGGCATCGCCTGGCGCGGCCCTGACCGGCCTCCAAAGG
CGGCGCGCGACAGCAGCGGCGCCCTCCCAAGCGGAGGCGGCGCCAGCGACGTCGGCTGCCTGACGCGGCCCCTCTGCGAC
GGCACCGGTGTACGGTGAGCCGCAGGCCTGGGAGGCTTGGCGCCCATGCGCCTGTCCACGCCGCGCTGGGGTGCTTCGCG
CCAGTGTGACAGCCAGCTGTGGCGGAGGTTGGTGGTGGTGGTGCCGACGGCCGCCGCTTGAGTCGGATTGGGGAAGACTA
GTCGATGGGAACGAGAGATCAGAGATGTCCCGTTCCACTCGTTCGGATGGGCTGTTGAAAAGCCACCAAGCGAGGCCTAG
TTGGGCACTAGCCCATGCTT------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
-----------S-------------------------------------S-------------S----S-----------
---S-----S----------------------------S--------------------------------------S--
---------------------S----S-------S-----S----------S----SSS--------S------------
-------------------S---SS--------------------------S----------------------------
---------------------S---------------SS-----------------------S-S--------S------
------S-S----------SSSSS--------S-------S---------------------------------------
-------SS----------SS----S----------------S-S----------S-----------------S------
---------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S------------------------SS------
-S---------------------S--------------------------------------------------------
----SSS-S-----------------------------------------------------------------------
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----------------------------------------------------------S----S-----------S----
----------------------------------------S----------------------S----------------
-S-----------S------------------------------------------------------------------
------------------------------------SSSSS---------------------------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_935
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-----------------------------------CAAAGCAGCAGGGAAGAGGA-------------------------
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>reverse_3190
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---------------------------------------------------------------------ACGCTAGCTTA
TCACTCGCC-----------------------------------------------------------------------
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