>input_sequence_67457
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----------------------------------------------------AAACCCATCCAAATCGATCTCACCTTCA
TTTCATTCCTCTAGCTACCCACATCGATCACTCCATCCTCATCTCTGTGCTGCTGCTGCTG------CAACAACACCAAC
AACAATGGCTGCCGGTGCAGCG---GCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACA
AGGACGGCGACGGCTGCATCACGGCGGAGGAGCTGTCCACGGTCATCCTCTCCCTGGGCCAGACCCCGACGCCCGAGGAG
CTGCGGGACATGGTGCGCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCG
CAAGGCCGACGCCGACGCGGACGCCAGCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCCGGGTGTTCGACAAGGACCACG
ACGGCCACATCTCCAAGGCCGAGCTGGGCCATGTCATGATCAGCCTTGGCGAGAAGCTCACCGACGAGGAGGTGGAGGAG
ATGATCCAGGAGGCCGACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACTC
CGACCAGCAGCAGCACTGAGATACACTGTCCGTCCATTTC-----TCCAATGGACAACTGACGGCCGGCCTGGTCGCCGT
GATTAATTCAGGTTCAGCAGCGACGAGTCAATCCAGCTATATGTCTCAGCCAGCTGCTCCATATCTCCAGTTGATGCCGG
CCGGAATTCTGCCGGAGCTTTCATTTACTCATTAACTGAGC------TGCATGTATAGATGTATGGATTGGTTACTGATA
T---------TCGTGACCTGAATAATGTGATTGATCGTCA----------------------------------------
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>chr5A_1_TraesCS5A01G057200
ACAACGAAGGAGTACGCCGACAAGGAGCGGCGTCGGCGGGACATGCACAACACCGCACATCCTTGCAGACCCGGAGCTGG
CTACGGCCTGGGCCTTTGACCGATCGGAGACGAGTAAGTGCCGGCTCCGGCCGCCACGAGGAGGAGATATTCAAGTACGG
CCAGGAGTGATTTCCTCGCGAGTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTGCACGACGCAGGAGCAAGTGGAGAAGATCATCCACGAGCAAGCGG
AGAAGATTAGGCCTTCTTGTTAAAAAATAATTTATTCTCGAGATTTGTATATATAATTCTTCTAAGATTGCCTTTTCATC
AAAACAAAAAAAAAATAAAGTTAACAATTCAAAATTCAAACCGGGTCTTTTTGCCTTTGCCCTTTTGTTAGCACTTTTGT
ACTTTTCCCGTTTAGATTGTGCACTTTTGTAACGCGTACGGTGCCCGTGCGGTGCTGATGTGCGATGGCTACAATTTTCT
TGACTTGGCTAGGATAG----AGAATGCACGATTGGAATTAATGAGAGCGACGAGTCAACGG----CCGCCATGTACTCC
TCCCAT---ATGACTCCATCTCCTATATAAATCTCCGCCTCCCTCA-CCTCTAAACCCATCCAAATCGATCTCACCTTCA
TTTCATTCCTCTAGCTACCCACATCGATCACTCCATCCTCATCTCTGTGCTGCTGCTGCTG------CAACAACACCAAC
AACAATGGCTGCCGGTGCAGCG---GCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACA
AGGACGGCGACGGCTGCATCACGGCGGAGGAGCTGTCCACGGTCATCCTCTCCCTGGGCCAGACCCCGACGCCCGAGGAG
CTGCGGGACATGGTGCGCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCG
CAAGGCCGACGCCGACGCGGACGCCAGCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCCGGGTGTTCGACAAGGACCACG
ACGGCCACATCTCCAAGGCCGAGCTGGGCCATGTCATGATCAGCCTTGGCGAGAAGCTCACCGACGAGGAGGTGGAGGAG
ATGATCCAGGAGGCCGACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACTC
CGACCAGCAGCAGCACTGAGATACACTGTCCGTCCATTTC-----TCCAATGGACAACTGACGGCCGGCCTGGTCGCCGT
GATTAATTCAGGTTCAGCAGCGACGAGTCAATCCAGCTATATGTCTCAGCCAGCTGCTCCATATCTCCAGTTGATGCCGG
CCGGAATTCTGCCGGAGCTTTCATTTACTCATTAACTGAGC------TGCATGTATAGATGTATGGATTGGTTACTGATA
T---------TCGTGACCTGAATAATGTGATTGATCGTCAAAAAGGTCTCGTCGATGTGTTCTATCCCTCCATTCCCTTA
GTAGTACAATGTTATCATGAAAAATACATTTTACATCTATACAAGGCCACTAACGATAATCGAGATAAAAATTAATGATG
TTTTCTCGTAGTATCAACTTGTTTAATACTTGCATGCATGTAGTCATAATTGTTGGAAATATGAGCAATTTATCAAATAA
TTTTATTAACAGAAATACTAAATAATGCATGACTAATATAGTAGAGATAAAACAAGTCATACGTTCTGACAGAGAGAAGG
TAAATAGCTTCTGCATATATGAACCGTAGCCTATCATATCTAAAGCAGACAGTATAGCAAGTAGCATATATGAAGTAGAA
CATATCATGTGTAGGACAAGAACTAGAACAAGAAACTGCAGCAGAACCTTTAACAGGAAAGACAAGAACACGTACGGGAC
AGCAGCAGCAGAAGCGCTGGACTTGGGGTCGGTGTCCTCGCCTGCCATGTCGTCGAGGAGGTCGTGGACGTCGGGGAAGA
AGTCGTCGGCGACCGGATCGTCCGTGATGAAGCAATCAGTAGTCGCGCTGAGCGCTCCCCAAAAACCTTATCACCCTTCA
GGCGCGCCATTCGAATTCAGTGTCTACTATAGAAAACGTTTCAACTCCCACGTGACCTTTCGTATACCCGTCGTGCATGG
CAAAAATTTAGATATCGGCTCGGCTCATTCCCGCAACCCGCAACCCGCGGCGCGTCGTGACGAGGCGAGGCGAGGTGTGG
CGAGGCGGGCGGCGGAGAAGGAGCGCGCGTGGATATCCCTCTTGTTCTCATGCTCGTACAAGTGGGGAAAGAACCTCCCT
TATAAGGAGGTCCAACTCCCACTAAACTAGCAATCTGGGACTAAACTTTAGTAATATCCCTTGCCTTGCACAAATGGGCT
AAGTGGGTCTCTAGGATTTATTAGGAATTTTTGAAATAGTTATTGGGCTGCCCAAAATAGACTAAATTCCAGCAAACCCC
>chr5B_643
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--AAGATTATGCATTCTTTTCAAAAATAAAATTACTCTCGGGATTTGTATGTATAATTCTTCTAGGATTGACTTTTCA--
AAACAAAAAAGTAATAAAAGTTCAGGGTTCAAAAATCAAACCGGGCC-TTTTGCCTTTGCACTTTTGTCAGCTCGCAC-T
ACCTTTCCCGTTTAGATTTTGCACTTTTGTAACGCGTACGGTGCCAGTGCGGTGCTGATGTGCAATGGCTACAGTTGTTT
TGACTTGGCTAGGATAGAAATAGAATGCACGATTGGAATTAATGAGAGCGACGAGTCAACGGACGGCAGCCATGTACCCC
TCCCATCCCATGACTCCATCTCCTATATAAATCTCCACCTCCCTGA-CCTCTAAACCCATCCAAATCGATCTCACCTTCA
TTTCATTTCTCTAGCTACCCACATCGATCACTCCATCGTCATCTCTGTGCTGCTG------------------CATCAAC
AACAATGGCTGCCGGTGCAACG---GCGATCAGCTCGGAGCAGATGAGCGAGTTCAGGGAGGCCTTCTCCTTCTTCGACA
AGGACGGCGACGGCTGCATCACGGCGGAGGAGCTGTCCACTGTCATCCGCTCCCTGGGCCAGACCCCGACGCCCGAGGAG
CTGCGCAACATGGTGTGCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCG
CAAGGCCGACGCGGACGCGGACGCCAGCGACCCCGAGCAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACG
ACGGCCACATCTCCAAGGCCGAGCTGGGCCATGTCATGATCAGCCTTGGCGAGAAGCTCACCGACGAGGAGGTCGAGGAG
ATGATCCAGGAGGCCGACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGC
CGACCAGCAGCAGCACTGAGATACATTGCCCGTCCATTTC-----TCCAGTGGAAAACTGACGACCGGCCTGGTCGCCGT
GATTAATTCAGGTTCAGTAGCGCCGAGTCAATC-AGCTGTATGTCTCAGCTAGCTGCTCCATTTCTTCAGCTGAAACTGG
CCGGAATTCTGCCGGAGTTTTCATTTACTCACTAACGAAACTGGCCGTGCATGTATAGATGTATGGATTGGTTGGTTACC
GATATTGGGCTCGTGAACTAAATGATGTGATTGGTCATAAAAAAAGTCTCTTCGGTGGGTTGTATCCCT-----------
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>chr5D_643
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--AAGATTATGCCTTCTTTTAAAAAATAAAACTATTCTCGAGATTTGTATATATAATTCTTCTAGGATTGCCTTTTCTTC
AAAACGAAAAGGTAATAAAGTTCACGGTTCAAAATTCAAACCGGGCC-TTTTGCCTTTGCACTTTTGTTAGCTCGCAC-T
ACCTTTCCCGTTTAGATTTTGCACTTTTGTAACGCGTACGGTGCCAGTGCGGTGCTGATGTGCAATG-CTACAATTGTTT
TGACTTTGGCTAGG-AG----AGAATGCACGATTGGAATTAATGAGAGCAACGAGTCAACGG----CAGCCATGT-----
------------ACTCCATCTCCTATATAAATCTCCACCTCCCCGA-CCTCTAAACCCATCCAAATCGATCTCACCTTCA
TTTCTCGAT-----CTACCCATATCGATCACTCCATCGTCATCTCTGTGCTGCTGCATCATCAACAACAACAACACCAAC
AACAATGGCTGCCGGTGCAGCG---GCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCTCCTTCTTTGATA
AGGACGGCGACGGCTGCATCACGGCGGATGAGCTGTCCACGGTCATCCGCTCCTTGGGCCAGACCCCGACGCCCGAGGAG
CTGCGCGACATGGTGCGCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCG
CAAGGCCGACGCGGACGCGGACGCCAGCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACG
ACGGCCACATCTCCAAGGCCGAGCTGCGCCACGTCATGGTCAGCCTCGGCGAGAAGCTCACCGACGTGGAGGTGGAGGAG
ATGATCCAGGAGGCCGACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACTC
CGACCAGCAGCAGCACTGAGATACATAGTTCGTCCATTTCTCCCATCCCATGGACACCTGACGGCCGGCCTGGTCGCCGT
GATTAATTCAGGTTCAGCAGCGACGAGTCAATCCA---------------------------------------------
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>chr5D_969
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-------------------CTCCTATATAAATCCCCCACCTCACAATCCTCTGAACCCATCCAACTTAATCTCGCCTTCA
TTCCTC----CTACCCACCCACATCGATCACTCCATCGTCATCTCTGTGCCCGCATCGAAAAGAGGTAGCAGGATGGCCG
GC--------GCCGGTGCCGCAGCAGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACA
AGGACGGCGACGGCTGCATCACGGCGGAGGAGCTGTCCACGGTCATCCGCTCCCTGGGCCAGTCCCCGACGCCCGAGGAG
CTGCGCGACATGGTGCGCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCG
CAAGGCCGACGCCGACGCGGACGCCGCCGACCCCGAGGAGGAGCTCCGGGAAGCCTTCAGGGTGTTCGACAAGGACCACG
ACGGCCACATCTCCAAGGCCGAGCTGCGCCACGTCATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTCGACGGG
ATGATCCAGGAGGCCGACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGC
CGACCAGCAGCAGCA-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-------S--------S-S-----SS--S---------------------------------S---------------
----------SS----------S--SS------------------S-S------------S-----------S-SSSSS-
--S---------------S--------------------------S-----------------S------------S-S-
-------------------------------------------------------------------S---------S--
------------------------------------S-------S-----------------------------------
-------S-----------------------------S------------------S--SS-------------------
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------------------------------------------------S-------------------------------
-----S--------------------------------------------------------------------------
----------------------------------------------------------S---------------------
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-------------------------S------------------------------------------------------
--------------------------------------S-----------S-----------S---S---S---SS-S--
-----------------S-------------S----SS-S---------------------------------SS-S-SS
S---------------S--S---S---------S--S-S-----S-----S---S--S---S-------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_65
---------------------------------------------CACAACACCGCACATCCTTG---------------
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>reverse_1078
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-------------------------------------CTCATCTCTGTGCTGCTGCT-----------------------
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>forward_186
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------GTGATTTCCTCGCGAGTCCA------------------------------------------------------
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>reverse_1097
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--------------------------------------------------------TGCTGCAACAACACCAACAA----
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>forward_622
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------------------------------------------GCAGGAGCAAGTGGAGAAGA------------------
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>reverse_2540
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-----------------------------------------------------------TCGTATACCCGTCGTGCATG-
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