>input_sequence_67452
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---------------------------------------------------------------------ATGAAGCTCCT
GGTGGACACCCAGGCCCGGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTCCTCGCGC
TGCCCGTCGGCACCGCCGTCAAGCTGCTGGGGAAGGAGTCCATGGTCGGCT--------GCGTCGGCAGCCTCTACGGCA
GCGTGGAGAAGCTCGACGGCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTGCTCCACCCCTCTGTCCTCTCGCCG
GCGGTAAGTAGCAAGAGC------TCCCTCCT---AGGCTTGCCGGCGCCGCCGTCC------------------CCACA
GGCGAAGACGTTCTACAGATGCAGCAAGCAGTGCA---------------------------------TCTGCTACAGCG
GCGGATATG------GCAGCAGCC------AGCAGGCTAG------ATGCAACAGCTGCCGGACTTACATGACGGAGAGT
TGCGGTACCTACTGTCCGTCAT---GTAACAACCAGATGACCACGCCCTTGACGGTCGTGCCG------TCGGCCGGGTC
CGAAGGTCCGGT---------GGCGGAGACGGCGGTGGGCATGAGCGGGAAGGGGTTCGCGCAGGGCATCGTGACGTACA
CGGTGATGGACGATCTCACCGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACATTCGCCGTCAGGGAC
CTCAGCGCGCTCCAGGAGAAGACCGTGTCCAGCTCGGCTATGACCAGGTGATTTTAATTTATGAATCATCAGTATTCAGT
ACTATCATTATCATAGTAGTACATGTTTCTCTCTCTTCCATTCGATATGTGTTTCT-------------TAACCATGTGC
ATCAATCAATCAATCAACCGTCACGTTGCATTTCCTCTAAATTTTGCAGGGTCTGGAGATTCTGA---------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr3D_1_TraesCS3D01G098700
CCTGGCCACACGAAGTGGGACCAATGCTCGCATTAGTCCCGATTCGTGATTGAACCGGGACTAATGTGGATATTGCCCTA
TGACCAAAGCCCAGTTTTCTACTAGTGCTAACATATGAACTATTGATTAGAGTTCATATTCAATACCACTACTTACTAAA
GAACTAAGAACTACAACTACAATCAAGCTAAAACAATCTTAGGTACAAAAAAA-TCCAATCTAAGATC-AAAAATATGAG
GGATTTGAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATCGGAGGAGCTTACGTTTC
TCTCTTCGGGGCCATCTCGATCCGCAAAAACGATGAAGAAACAGTGAAGATCCGA-GGGGGGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGAGTTGGGGAAGAAAAGATGAAACTGCTGACGGGGGGAAGGGGAGGGGTG--GAGATGGGCATGG--
GCGC-GGGGTTTCGGGCGAAATAACTGCCCGGACCCTACCGCCAGGGGCTCTGACGGTAGGGTTAGACAGGCTACCGCGA
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGGATGGCGGGCGTCTCCGCGTGCTGACATGGATTACTACCCTACCGCCAG
GTCCCCTGGCGGTAGCTTGTCTAACCCTACCGCCAGGGACTCTGGTGATAAGGAAAAAGGTCAAATCCTGATTTTTTTTT
CCTAA-CTAGGGTCAGATCCTGAATTTATATGGCAAAAGGGTCAAAAACACGAAATTCGGCCTCCTTCTCCCTCTCCCGT
CCCGTCACCTCAATCCAATCTGTTGGCCAGCTCCTGCTA---TTCTTCCCCTGTCAAATACTC-CACAGCG-------CG
CTCGG--TGTCAAGCACTCAAGCCTATTCATTTCTCCTCTATCCTCGCCAGTCGCCACCACACAAGGAA---GTGAGGAA
AGAGCGAGGCACCGC---CGCCGCCCGCCCAGCTCCAGGAGGGCGACCACCACGACGACCGCGTTGAGCATGAAGCTCCT
GGTGGACACCCAGGCCCGGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTCCTCGCGC
TGCCCGTCGGCACCGCCGTCAAGCTGCTGGGGAAGGAGTCCATGGTCGGCT--------GCGTCGGCAGCCTCTACGGCA
GCGTGGAGAAGCTCGACGGCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTGCTCCACCCCTCTGTCCTCTCGCCG
GCGGTAAGTAGCAAGAGC------TCCCTCCT---AGGCTTGCCGGCGCCGCCGTCC------------------CCACA
GGCGAAGACGTTCTACAGATGCAGCAAGCAGTGCA---------------------------------TCTGCTACAGCG
GCGGATATG------GCAGCAGCC------AGCAGGCTAG------ATGCAACAGCTGCCGGACTTACATGACGGAGAGT
TGCGGTACCTACTGTCCGTCAT---GTAACAACCAGATGACCACGCCCTTGACGGTCGTGCCG------TCGGCCGGGTC
CGAAGGTCCGGT---------GGCGGAGACGGCGGTGGGCATGAGCGGGAAGGGGTTCGCGCAGGGCATCGTGACGTACA
CGGTGATGGACGATCTCACCGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACATTCGCCGTCAGGGAC
CTCAGCGCGCTCCAGGAGAAGACCGTGTCCAGCTCGGCTATGACCAGGTGATTTTAATTTATGAATCATCAGTATTCAGT
ACTATCATTATCATAGTAGTACATGTTTCTCTCTCTTCCATTCGATATGTGTTTCT-------------TAACCATGTGC
ATCAATCAATCAATCAACCGTCACGTTGCATTTCCTCTAAATTTTGCAGGGTCTGGAGATTCTGAAGGCGTCGCTGCAGT
CCAAGACCGTGCTCACCGACGTTTTCCTTAAGCCCGCCAGCAACGCTTGAAGG-CACG-GTTCTGCGCCTGACATGCAGA
TCGGCATGGAAAAGTAGCTCGATGCCTCGATCCATGTAGCTAATGTTAAGTACTCCCTCCGTTTCAAATTACTCGTTGCA
CAAATGGACGTATCTAGAACTAAAATACATCTAGATACATCTACACGTGCGACAAGTAATTCCAAATTACTCGTCACACA
AATGGATGTATCTAGAACTAAATACATCTAGATACATCTACACCTGCGACAAGTAATTCGGAACGGAGCGAGTAGGTTGG
CTGGTCCTTTTGCATGAACATGTGCAAACTGCAAAGACTAGTAGCACCATCCAATTAGGTGATGATCTTTGTGTGAGCAT
CAGAACTATCTAAAACGGTGGCATCTTTTGGTAAT-GTCAAGTGTCAGATGGTAC--------TAGTTAGATGCTCGTGA
TCCAGCTTAATTAATCAGTTACTCCAGGTTGTAGTAGTACTCCACTTTGTGTTGATGCTTGATGTATGGGTTTGCATCGC
AGTTAGTACCATCATCTTCTGTTGGTTCTCAAAATGTTTTTACATGCGTATGTCGTATGTGTCGATCTGTGTAGCA-GCA
TGGTTCATTCCCTCTTGTGCGCCTACTGGAAGGCCCAAAATCATCCATGGCAGGTGCGTGGGCGGTGGGAATATGAAGGT
CATGCAAGCGTTGCTTATTCTTCCAGCTTGGTTCACCATACAAACATGCCAT----------------------------
-CCCAGCATAGCTCTCACCTTCTCAACACAATCAAGGCCGCAATGGGCGACAGCGAATGCAAGGGGTCTGGCCGCTCTGA
TTCCGGCATTGCTACTGTAACA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TCAAATCAGCAACTTGCAGAAATCGATACCCATGCACTTACCCTTGCTTCAAAGTTAAAAATCCAGAAAACACTCGGCTG
AAGCCTATTAAA-CACAAAACAAACTCATATGAGATGCTCGTA
>chr7D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACTATTGATTATAGTTCATATTCAACACTACTACTTACTAAA
GAACTAAGAACTACAACTACAATCAAGCTAAAACAATCCTAGGTG-AAAAAGAATCCAATCTAAGTTC-AAAAATATAAG
GGATTTCAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATCGGAGGAGCTTTCGTTTC
TCTCTTCGGGGCCATCTCGATCCACAAAAATGGTGAAGAAACGGTGAAGATCCGAGGGGGGGAGTGGAGGAGATGAGAGA
GGG--------GCGAGTTGGGGAAGAAAAGATGAAACTGCCGACGGGGGAAGGGGGAGGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTCTCGGGCGAAATAACTGCCCGGACCCTACCGCCATGGCCTCCGGCGGTAGGGTTAGACAGCCTACCGCCA
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGGGCGGCGGCCGTCTCCGCGTGCTGACGTGGATAAGTACCCTACCGCCAG
GGGCCCTGGCGGTAGGCTGTCTAAACCTACCGCCAGAGCCCCTGGCGGTAAGAAAAAGGGTCAAATCCCGAATTTTTTTC
A--AA-CCGGGGTCAGATCCTGATTTTCTATCGGAAAAGGGTCAAAA-CACGAAATTCGGCC------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr7D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACTATTGATTAGAGTTCATATTCAATACCACTACTTACTAAA
GAACTAAGAACTACAACTACAATCAAGCTAAAACAATCTTAGGTACAAAAAAAATCCAATCTAAGTTC-AAAAATATGAG
GGATTTGAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATTGGAGGAGCTTACGTTTC
TCTCTCCGGGGCCATCTCGATCCGCAAAAACGGTGAAGAAACGCTGAAGATCCGAGGGGGGGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGACTTGGGGGAGAAAATGAGGAACTGCCGACGGGGGGAGGGGAAGGGGCGGGGAGATGGGTAGGG--
GCGCAGGGGTTTTGGGCAAAATAACTGCCCGGACCCTACCGCCAGGGGAGCTGGCGGTAGGGTTATACAGCCTACTGCCA
GGTTCCCTGGCGGTAGGGTGCGACGGAGGGGGACGGCGGCCGTTTCCGCGTGCTGACGTGGATAAGTACCCTACTGCCAG
GTCCCCTGGCGGTAGGCTCTATAACCCTACCGCCGGCTCCCCTGGCGGTAAGAAAAAGGATCAAATGCCGAAATATTTTC
A--AA-CCAGGGTCAGATCATGAAATTGTTAGAAAAAAGGGTCAAAA-CACGAAATTTTGCCT-----------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr4D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACTATTGATTAGAGTTCATATTCAATACCACTACTTACTAAA
GAACTAAGAACTAGAACTACAATCAAGCTAAAACAATCTTAGGTAAAAAAA---TCCAATCTAAATTA-AAAAATATGAG
GGATTTCAAGCAAATAGGGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGATGGATCGGAGAAGCTTACGTTTC
TCTCTTCGGGGTCATCTCGATCCGCAAAAACGGTGAAGAAACGGTGAAGATCCGAGGGGGGGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGAGTTGGGGAAGAAAAGATGAAACTGCCGACGGGGGAAGGGGAAGGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTCTCGGGCGAAATAACTGCCCGGACCCTATCGCCAGGGTCTCTGGCGGTACGGTTAGACAGGCTACCGCCA
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGGACCGCGAGCGTCTCCGTGTGCTGACGTGGATTACTACCCTACCGCCAG
AGCCTCTGGCGGTAGCCTGTCTAACCCTACCGCCAGGGCCCCTAGCGGTAAGAAAAAAGGTCCGATCTCGAATTTTTTCC
C--AA-CTGAGATCAGATCCTGAATTTGTATCGCAGAAGGGTCAAAA-CACGAAATTTTGCCT-----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr5D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACTATTGATTAGAGTTCATATTCAATACCACTAGTTACTAAA
GAACTAAGAACTAGAACTACAATCAAGCTAAAACAATCTTAGGTC---AAAAAATCCAATCTAAGTTC-AAAAATATGAG
GGATTTCAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATTGGAGGAGCTTACGTTTC
TCTCTTCGGGGCCATCTCGATCCTCAAAAACGATGAAGAAACGGTGGAGATCCGAGGGGGAGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGACTTGGGGGAGAAAAAGAGGAACTGCCAATAGGGGGAGGGGGAGGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTCTCGGGCGAAATAACTGCCCAGACCCTACCGCCATGGGCTCCGGCGGTAGGGTTAGACAGCCTACCGCCA
GGTGTCCAGGCGGTAGGGTGCGACAGAGGGGGACGGCGGCCGTCTCCGCGTGCTGACGTGGATAAGTACCCTACCGCCAG
GGGCCCTGGCGGTAGGCTATCTAAACCTACCGCCAGAACCCCTGGCGGTAAGAAAAAGGGTCAAATCCCGATTTTTTTTT
C--AAACCGGGGTCAGATCCTGAATTTCTATCGGAAAAGGGTCAAAA-CACGAAATTTGGC-------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr1D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACAATTGATTAGAGTTCATACTCAATACCACTAGTTACTAAA
GAACTAAGAACTAGAACTACAATCAAGCTAAAACAATCTTAGGTG-AAAAAAATTCCAATCTAAGTTC-AAAAATATAAG
GGATTTCAAGCAAATAATGCATCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATCGGAGGAGCTTACGTTTC
TCTCTTCGGGGCCATCTCGGTCCGCAAAAA-GGTGAAGAAACAGTGAAGATCCGAGGGGGAGAGTGGAGGAGATAAGAGA
GGGAGAGAGGGGCGACTTGGGGGAGAAAAGATGAAACTGCCGACGAGGGAAAGGGGAGGGGTGGGGAGATGGGCAGGGAC
GCGT-GGGGTCTCGGACGAAATAACTGCTCGGACCCTACCGCCAGGGTCTCTGGCGGTAGGGTTAGACAGGCTACCGTCA
GAGACCCTGGCGGTAGGGTGCGACGGAGGGGGACGGCGATCGTCTCTGCGTGCTGACGTGGATTAGTACCCTACCGCCAG
GGCCCCTGGCGGTAGCCTGTCTAACCCTACCGCCAGAACCCCTGGCGGTAAGAGAAAAAGTCAAATCCCGATTTTTTTTC
C--AA-CCGTGATCAGATCCTGAATTTGTATCGCAGAAGGGTCAAAA-CACGAAATT-----------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr6D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACTATTGATTAGAGTTCATATTCAATACCACTAGTTACTAAA
GAACTAAGAACTAGAACTACAATCAAGCTAAAATAATCTTAGGTCCAAAAAAAATCCAATCTAAGTTC-AAAAATATGAG
GGATTTCAAGCAAATAATGTGTCGAATCGGAAGCAAGTTTGCAAAAAACTAATTGGAGGGATTGGAGGAGCTTACATTTT
TCTCTTCGGGGCCATCTCGATCCGCAAAAACGATGAAGAAACGGTGAAGATCCGAGAGGGAGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGACTTGGGGGAGAAAAAGAGGAACTGCCGA-GGGGGGAGGGGGAGGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTCTCGGGCGAAATAACTGCCCGGACCCTACCACCATGGGCTCCGGCGGTAGGGTTAGACAGCCTACCGCCA
GGTGTCCTGACGGTAGGGTGCGACGAAGGAGGACGGCGGCCGTCTCCGGGTGCTGACGTGGATAAGTACCCTACCGCCAA
AGGCCCTGGCGGTAGGCTGTCTAACCCTACCGCCAGAGCCTCTGACGATAAGAAAAAAAGTCAAATCCTGAATT-GTTTT
C--AAACCGGGGTCAGATCCTGAATTTTTATCGGAAAAGGGTCAAAA-CACGAAATT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr6D_108
--------------------------------------------------------------------------------
---------------------------CTAACATATGAACAATTGATTAGAGTTCATATTCAATACCACTAGTTACTAAA
GAACAAAGAACTAGAACTACAATCAAGCTAAAACAATCTTAGGTG-AAAAAAAATCCAATCTAATTTCAAAAAATATGAG
GGATTTCAAGCAAATGATGCGTCGAATCAGGAGCAAGTTTGCAAAAA-CTAATTGGAGGGATTGGAGGAGCTTACGTTTC
TCTCTTTGGGGCCATCTCGATCCGCAAAAA-GATGAAGAAACGGTGAATATCTGA-GGGGGGAGTGGAGAAGATGAGAGA
GGGAGAGAGGGGCGAGTTGGGGAAGAAAATGAGGAACTGCCGATGGGGGGAG-----GGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTCTCGGGCGAAATAACTGCCCGGACCCTACCGCCAGGGGCTCT-GCGGTAGGGTTAGACAGGCTACCGCCA
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGGACGGCGGTCGTCTCCACGTGCTGACGTGGATTAGTACCCTACCGCCAG
GGGCCCTGACGGTAGGCTGTCTGACCCTACCGCCAGGACCCCTAGCGGTAAGAAAAAGGGTCAAATCTTGAAAA-TTTTC
C--CAACCGGGGTCAGATCCTGAATTTGTATCATAAAAGGGTCAAAA-CACGAAATTCAGCC------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr7D_119
--------------------------------------------------------------------------------
--------------------------------------ACTATTGATTAGAGTTCATATTCAATACCACTACTTACTAAA
GAACTAAGAACAACAACTACAATCAAGCTAAAACAATCTTAGGTA-CAAAAAAATCCAATCTAAATTC-AAAAATATGAG
GGATTTGAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATCGGAGGAGCTTACGTTTC
TCTCTTCGAGGCCATCTCGATCCGCAAAAACGGTGAAGAAACGGTGAAGCTCCGAGGGGGAGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGAGTTGGGGAAGAAAAGATGAAACTGCCGACGGGGGGAGGGGGAGGGGTGGGGAGATGGGCAGGG--
GCGC-GGGGTTTCGGGCGAAATAACTGCCCGGACCCTACCGCCAGGGTCCCTGGCGGTAGGGTTAGACAGGCTACCGCCG
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGAACGGCAGGCGTCTCCGCGTGCTGACGTGGATTACTACCCTACCGCCAG
GTCCCCTGGCGATAGCCTATCTAACCCTACTGCCAGGGA-CCTGGCGGTAAGAAAAAGGGTCAAACCCCGAATT-TTTTA
C--CAACTGGGGTCAGATCCTGATTTTATATCGGGAAAGGGTCAAAA-TACGAAATTCAGCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------
>chr7D_119
--------------------------------------------------------------------------------
--------------------------------------ACTATTGATTAGAGTTCATATTCAATACCACTACTTACTAAA
GAACTAAGAACAACAACTACAATCAAGCTAAAACAATCTTAGGTA-CAAAAAAATCCATTCTAAATTC-AAAAATATGAG
GGATTTGAAGCAAATAATGCGTCGAATCGGAAGCAAGTTTGCAAAAA-CTAATTGGAGGGATCGGAGGAGCTTACGTTTC
TCTCTTCGAGGCCATCTCGATCCGCAAAAACGGTGAAGAAACGGTGAAGCTCCGAGGGGGAGAGTGGAGGAGATGAGAGA
GGGAGAGAGGGGCGAGTTGGGGAAGAAAAGATGAAACTGCCGACGGGGGGAGGGGGAGGGGTGGGGAGATGGGCAGGG--
GTGC-GGGGTTTCGGGCGAAATAACTGCCCGGACCCTACCGCCAGGGTCCCTGGCGGTAGGGTTAGACAGGCTACCGCCG
GGTGCCCTGGCGGTAGGGTGCGACGGAGGGGAACGGCAGGCGTCTCCGCGTGCTGACGTGGATTACTACCCTACCGCCAG
GTCCCCTGGCGATAGCCTATCTAACCCTACTGCCAGGGA-CCTGGCGGTAAGAAAAAGGGTCAAACCCCGAATT-TTTTA
C--CAACTGGGGTCAGATCCTGATTTTATATCGGGAAAGGGTCAAAA-TACGAAATTCAGCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------
>chr3A_777
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TCTTCCTCTCCCGT
CCCGTCACCTCAATCCAATCCGCGGGCCGGCTCTTGCTATTCTTCTTCCCCTTTCAAATACTC-TACTCCACAGCACACG
CTCGG--TGTCAAGCACTCAAGCCTATTCATTTCTCCTCGGTCC-------TCGCCACCACACAAGTGA---GTGAGGGA
AGAGCTAGATACCACCGTCGCCGCCCGCCCAGCACCAGGATGGCGACCACCACGACCACCGCGCTGAGCATGAAGCTCCT
GGTGGACACCCAGGCCCGGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTCCTCGCGC
TGCCCGTCGGCACCGCCGTCAAGCTGCTCGGGAAGGAGGCCATGGTCGGCT--------GCGTCGGCAGCCTCTACGGCA
GCGTGGAGAAGCTCGACGGCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTGCTCCACCCCGCCGTCCTCTCGCCG
TCGGCCAGCAGCAAAAGC------TCCCTCCT---GGGCATGCCGCCGCCGCCGTGC------------------CCACA
GGCGAAGGCGTTCTACAGATGCAGCAGGCAGTGCA---------------------------------ACTGCTACAGCG
ACGGATATGACGGCAGCAGCAGCC------AGCAGGCTAG------ATGCAACAGCTGCCGGACTTACATGACGGAGAGT
TACGGCACCTACTGTCCATCGT---GTAAGAACCAGATGACCACGGCCTTCACGGTCGTGCCG------TCGGCCGCGTC
CGGAGGCGAGGTGGCGCAGGCGGCGGGC---------GGCGTCAGCGGGAAGGGGTTCGTGCAGGGCATCGTGACGTACA
CGGTGATGGACGACCTCACGGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACCTTCGCCGTCAGCGAC
CTCAGCGCGCTCCAGGAGAAGACCGTG--CAGCTCGGCTATGACCAGGTGATTATGAATCTC--ATCAGCAGTATCATAC
------------------------------------TCCATTCGATATGTCTTCGT-------------TAACCATGTGC
ATCAATCAA----TCAATCGTCACGTTGCATTTCCTCTAAATTTTGCAGGGTCTGGAGATCCTCAAGGCGTCGCTGCAGT
CCAAGACCGTGCTCACCGACGTTTTCCTGAAGCCCCCCAGCAGCGCTTGAAACGCACG-GTCCTGCGCCTAACATGCTCA
TCGACATGGGAAAGTAGCTCGATGTGTCTAGCTAAATTAGGTTGATCT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTTGTGCGGCCAT
CAGAACTATCTA--ACGGTGGCATCTTTTGGTAAT-GTCAAGTGTCCGATGGTACTATGGTAGTAGTTAGATGCTCGTAG
TCCAGCTTAAGTTATCAGTTGCTCCAGGTTGTACTAGTACTTA----TGTGTTGATGCTTGATGTATGCGTTTGCATCGC
AGGTAGGGGTATCATCTTCTGTTGGTTCTCAAAATGTTTTTTCATGCGTATCTCGTATGTGTCGACCTGTGTAGCAAGCA
TGGTTCATTTCCTCTTGTGCGCCCACTGGGAGGCCTAAAATCATCCATGGCAGGTGCGTGGG-------AATGTGAAGGT
CGTGTAAGCGTTGCTTATTCTTGCAGCTTGGTTCACCATACAAACATGTCATACGCCAG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3B_777
TCTCCCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCCCGT
CCCGTCACCTCAACCCAATCTGAGGGCCGGCTCTTGCTA---TTCTTCCCCTTTTAAATACGAGTACTCCACAGCACTCT
CAGTGTCTGTCAAGCACTCAAGCGTGTTCA--TCTCCTCGGTCC-------TCGCCACCACACAAGTGACAAGTGAGGGA
AGAGCGGGAA---ACCGTCGCCGCCCGCACAGCTCCAGGATGGCGACCGCCACGACCACCGCGCTGAGCATGAAGCTCCT
CATCGACACCAAGGCCCGGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTCCTCGCGC
TGCCCGTCGGCACCGCCGTCAAGCTGCTCGGGAAGGAGGCCATGGTCAGCT--------GCGTCGGCAGCCTCTACGGCA
GCGTAGAGAAGCTCGACGGCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTGCTCCACCCCTCTGTCCTCTCGCCG
GCGGTAAGTAGCAAAAGC------TCCCTCCT---AGGCTTGCCGGCGCCGCCATCC------------------CCACA
AGCGAAGACGTTCTACCGATGCAGCCTGCAGTGCA---------------------------------TCTGCTACAGCG
GCGGATATG------GCAGCAGCAGCAGCGAGCAGGCTAG------ATGCAACACCTGCCGGACTTACATGACGGAGAGC
TACGCAACTTCGTGTCCATCAT---GTAACAACCAGATGACCACGCCCTTCACGGTCGTGCCG------TCGGCCGGGTC
CGGAAGCAAGGT---------GGCGGCC---------AGCGTCAGTGGGAAGGGGTTCGTGCAGGGCATCGTGACGTACA
CGGTGATGGACGACCTCACCGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACATTCGCAGTCAGGGAC
CTCAGCGCGCTCCAGGAGAAGACCGTG--CAGCTCGGCTATGACCAGGTGATTTTGATTTATGAATCATCAGTAGCATAC
AC----------------------GTTTCTCTCTCTTCCGTTCGATATGTCTTTGT-------------TAACCAT----
------------------------GTTGCATTTCCTCTAAATTTTGCAGGGTCTGGAGATCCTCAAGGCGTCGCTGCAGT
CCAAGACCGTCCTCACCGACGTTTTCCTGAAGCCCGCCAGCAGCGCTTGAAGG-CACGTGTCCTGCGCCTGACATGCACA
TCGACATGGGAAAGTAGCTCGATGTGTCTAGCTAAATTAGGTTGATCT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTTGTGTGGCCAT
CAGAACTATCTAAAACGGTTGCATCTTTTGGTAAACGTCATGTGTCAGATGGCATTAGC---------------------
---------------CAGATGCTCCAGGTTGTACTAGTACTTTG--TTGTGCAGATGCTTGATGTATGGGTTT-------
----------ATCATCTTCTGCTGGTTCTCAAAATGTTTTTTCATGCGTATGTCGTATGTGTCGATCTGGGTAGC-AGCA
TGGTTCATTTCCTGTTGTGCGCCTACTGGAA----------------------------GGG-------ATTGTCAAGGT
CATGCAAGCGTTGCTTATTCTTCCAGCTTGGTTTACCATACAAACATGTCATACGCCAGGGTAATCTTTGGCGATTCCCA
TCCTAGCATAGCTC--ACCTTCTCAACACAATTAAGGCCGCAATGGGCGACAGCGATTGCAC-GGGTCTGTCCGCTCTGA
TTCCGGCATTGCCACTGTCTACCAAGTACTGCCAACTAGGGGGTGTCGTGTATGTAATTTCTGTAAATGCAGTAGATTTA
TAATTTGCAAATTAATTATAATTATTTTAGGCTTAACCATATGGATGCGAAGAAAGGATGTCACGGTTACTGTAGCTTAC
GTGACCTCCCTTGAGGATGTTAGAGGATCCGGTTCCCGTGTTGTAGTGAGTAGGGCGAGAGAGAAATTACAAGTGTGGTG
GTATTTACCATAAGATGTGCAAATGCATTTGGCGACACCCGCGTGGAGAAGTTCGCAATAGTAACATTAAGGTCCATGAA
TCAAATCAGCAACTTGCAGAAATCGATACCCATGCACTTGCCCTTGCCTCAAGATTTAAAATCCAGAAAGCACTCGGCTG
AAGCCTATTAAAACACAAAACAAACTCGTATGACAGCGTCGTA
>chr4A_973
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GGCGACCACCGGGAGCACCGCGCTGAGCATGAAGCTCCT
CATCGACACCAAGGCCCGGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTCCTCTCCC
TGCCGGTCGGCACCGCCGTCAAGCTGCTCGGCAAGGACTCCATGGTCGGCA--------GCGTCGGCAGCCTCTACGGAA
GCGTCGAGAAGCTCGACGCCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTGCTCCACCCCTCCGTCCTCTCGCCG
GCGGTCAGCACCAAGAGC------TCCCTCCT---AGGCTTGCCGGGGCCGCCGCCTC------------CACAGCCACA
GGCCAAGACGTTCTATGGGTGCAGCTTGTCCTGCG---------------------------------GCTGTTACAATA
GCGGATATG------GTAGCGGCC------ACTCCGGTACATGCAAATTCTACAGCTGCCGGACCTACGTGACGGGCAGT
TACGGCACCTACTGCCCGTCAT---GTGATAAGCAGATGACCACGGAGGCGAAGCTCGTGCCG------TCGGGCGTGTC
CGGAGGCCAGACTGCGCAGGCGGTGGCC---------GGCGTCAGCGGGAAGGGGTACGTGCAGGGCATCGTGACTTACA
CGGTGATGGACGACCTCACCGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACATTCGCCGTCAAGGAT
CTCAGCGCGCTCCAGGAGAAGACCGTG--CAGCTCGGCTACGACGAGGTGACAATGAATCCTCACTATCGC---------
-------------------------TTTCTCTGGCAT-------ATATGTCTTCCATATTTCTTTGTTGTAATCATGTGC
ATCAAC--------CAATCGTCACATTGGATTTCCTGCAATTTTTGCAGGGTCTGGAGATCCTGAAGGCGTCGCTGCAGT
CCAAGACCGTCCTCACCGACGTTTTTCTGAGCCCCGCCCGCAAGGCTTGAAGC-CACG-GTCCTGCGCCTCACGCCATG-
TCGACATGGAAAAGTAGCTCGATGCATCGATCCATGTAG-----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr3A_984
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------CGACCACCGCGCTGAGCATGAAGCTGCT
GGTGGACACCAAGGCGCGGCGCGTGCTGTTCGCCGAGGCGAGCAAGGACGTGGTGGACTTCCTTTTCTCCATCCTCTCCC
TGCCCGTCGGCACCGCCGTCAAGCTGCTCGGCAAGGGCTCCATGGTCGGCA--------GCGTCGGCAGCCTCTACGCCA
GTGTTGAGAAGCTCGACGGCACCTACGTCCAGCCCGGCGCCGCCAAGGACGCGCTCCTCCACCCCGCCGTCCCATCCCCG
GCCGTCAGCAACAAAAGC------TCCCTCCTCTTAGGCTCGCCGCCGCCGCCGGCGTCGTCCATCCGGGCCCAGCCCCA
GCCGACGACGTTCTTCGGATGCAATAGCCAGTGCAGGTCGCGCAACTACGACTACGACAGCGTCTACGTCTACGACGAGG
GCGAGTGTG------GCCGCC---------AGCAACTTTC------TTGCAGCGGTTGCCGTAGCTACATGACGGACAAG
AGAGGCACCGCCTGTCCGTCGT---GTGGCGGCCAGATGTCCAAGGAGTTGAAGCTCGTGCCG------TCAGCGGTGTC
CGGACGGCA----------------GGC---------GGCGTCGCCGGAAAGGGGTTCGTGCAGGGCATCGTGACGTACA
CGGTGATGGACGACCTCACCGTGACGCCCATGTCGTCCATCTCCAGCATCGCCCTGCTCAACACATTCGGCGTCAAGGAC
CTGGGCGCGCTCCAGGAGAAGACCGTG--CAGCTCGGCTACAACGAGGT-------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr3A_989
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------ACCGCGCTGAGCATGAAGCTCCT
CATCGACACCAAGGCCCAGCGCGTGCTGTTCGCGGAGGCGAGCAAGGACGTGGTGGACTTCCTCTTCTCCCTACTCTCGC
TGCCCGTCGGCACCGCCGTCAAGCTGCTGGGGAAGGAAGCCATGGTCGGCT--------GCGTCGGCAACCTCTACGGCA
GCGTCGAGAAGCTTGACAGCACCTACGTCCAGCCCGACGCGGCCAAGGACGCCCTCCTCCACCCCGCCGTGCTCTCGCCC
GCGGCTGGCACCAAGA---------------TGTTCCGCTTGACGCAGCCGTCTTCT------------------GGGCA
GTCCAAGGGATTCTTCAAATGCAGCTA-----------------------------------------------------
-------------------------------------------------CAGCGGCTGCACCAGCTACGTGACCGACACC
AGCGGCACCATGTGCCAGTGCGGTCGCGGTTGCTCGATGACCACGGCCATGCACTTCATCCCAGGCAATG----------
-----GCAAGGT---------GGCCGCC---------AGCGTCGGCACCAAGGGGTTCGTGCAGGGCATCGTGACGTACA
CGGTGATGGACGATCTCGCCGTGACGCCCATGTCCTCCATCTCCAGCATCACCCTGCTCAACACATTCGCCGTCAAGGAT
CTCAGCGCGCTCCAGGAGAAGACCGTG--CAGCTCGGCTACGACGAGGTG------------------------------
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-------------------------------------------
>chr3D_997
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--------------------------------------------------------------------------------
-----------------------------------------------------------------GAGCATGAAGCTGCT
GGTGGACACCGAGGCGGGGCGCGTGCTGTTCGCCGAGGCCGGCAAGGACGTCGTGGACTTCCTCTTCTCACTCCTCGTCC
TGCCCGTCGGCACCGCCGTCAAGCTGCTCGGGCCGGACTCAATGGTCGGGGGCGCCGGCGAGTCGGCGACCTCTACGCCA
GCGTTCAGAAGCTCGACGGCTCCTACGTCCTGCCCGGGGCGAACACCGATGCGCTCCTACGCCCCGCCGTGCCCTCGCCG
GCGGCGGCCCCCAGCATCTCCCTGTCCCTCCT---CGGCCTGCCGAGCCCGTCGCC------------------------
------GGCTTTCTTCAGGTGCGGCTA-----------------------------------------------------
-------------------------------------------------TTGCCACAGCCCCGGCTACGTGACGGAGGTG
AGAGGCGCCAAGTGCCCCAGAT---GTGGCAACCATATGGCGGACGCGATCCAGTGCGTGCGGCCCGATTCCGGCGGCTC
CGGGCA---------------GGCCGCC---------GCCGGAGGGGCGAAAGGGTTCGTGCAGGGCGTGGTGACGTACA
CGGGGATGGACAACCTCGCCGTGACCCCCATGTCCACCATCTCCAGCATCACCCTGCTCAACACCTTCGCCGTCAGGGGC
CTCAGCGCGCTCCAGGAGAAGACCGTG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>SNPs
S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S----------------------------------S----
-----------------------------------------------------S------------------------S-
---------------------------------S-----------------------S----------------------
----------------S----------------------------S------S---------------------------
-SS--------------------------------------------S---------------SSS---S----------
----------------------SS----S----S------------------S-----------S--SS-S---------
---------------------------------------SS---SSSSSSS---------------SS----------S-
--------SS---S--------------------------S---------------S------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--S---S-S-----------------SSSSSSSSSSS---S-S----------------S--------------------
--------------------------------------------------------------------------------
---------------------------SS--------------------------S-------------------SSSSS
--SSSSSSSSSSSSSSSSSSSSSS--------------------------S-----------------------------
---------SSSS----S------------------------------------------S-------------------
----------------------------S--------------------------------S------------------
---S---------------------S-------------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS---
------------------------------------------------------------------------------SS
----------S-S-------S------------S-------SSSSS----------------------------------
--S---SSSS-------------------------------S--------------------------------------
---------S-------------------------S--------------------------SSSSSSS---S-------
------------------------------------------------S-------------------------------
---S----------SS----------------S-----------------------S----SS-------S---------
------------S-----SSSS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------S----SS--S------------S----------
---------------------------S-----S-SSS-----
>forward_786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AACACGAAATTCGGCCTCCT--------------
--------------------------------------------------------------------------------
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-------------------------------------------
>reverse_1938
--------------------------------------------------------------------------------
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-----------------CCGTCACGTTGCATTTCCTC-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_970
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAGTGAGGAA
AGAGCGAGGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>reverse_2318
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
CTGGTCCTTTTGCATGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
