>input_sequence_67428
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--------------------------ATGGCGACGCCGACCGTAGAGAAGCCCGACGGGGTGGAGATCCGCGAGGTGTGG
GCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGACTACCCCTACGTCGCCATGGACACCGAGTT
CCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTTCAACTACGCCACGCTCAAGGCCAACGTCG
ACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCGGCCTCCCCGCCCTCGGCCCGGACGGCCGC
CCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTCGCCGCCGCGGACTCCATCGACCTGCTGCG
CCGCAGCGGGATCGACTTCGCCCGCCACGCCGCCGAGGGGGCCGACTCGCGCCGCTTCGCCGAGCTGCTCATGTCCTCCG
GCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACGACTTCGGCTACTTGCTCAAGCTGCTCACG
GGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATTTACTTCCCCGTGATCTACGACATCAAACA
CCTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGAGCTGCTCGACGTCGAGCGGGTCGGGATCT
GCCATCAGGCGGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGCTCAAGGAGTCATACTTCGGCGGATTAACT
GAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACCACCTCTGTTCACTGA--------------
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>chr5A_1_TraesCS5A01G225900
AATATCACTATTTGGTGCAAAATGCTGTGATGTGTGAACCCGCACCTTTGACTTTGGTTTAATATCCTGGTTCAATACAA
TATATCTTACTCTTACTTTCATGATAGTTGATGATTGACATGGAAACTAAATTA------CCTAGAGCTATTTTTTTGTG
TGTCTCGTGGCGTTGCATTTTTGCTAGCATGGCATATTTTTCTTCCATGAGAAACATGTTTCATTGCCATGGTTGTACTT
CTCCGCAGCGGCGGTCCGTTTTTAGTGCCATAGGATCTTTTTTTTCACAAGAGTCGGGTTTCATTACCGTAGTGTATCTT
TTCACCGCGACAGTCTATTTTTATTCTTTTCTAAGTCTAGCCTATTTTTACTCCCATGTCAATATCTTCGTTGCAAACCA
CGGATATTTTTCATGTGAAGAAAAAGAAGAAGA--CTAAAGAAAAGCGTAGAAAAATGAAGACTTGCATTGACCAAACCC
AAGTCAAAGAAAACCCTCCTGACTGGAAGAGCCGAAGAGGCAAAACAAAACCAAATTGTTCATCCACGCTTGCCCTTGTT
TTCCTTGCTGGTTCTTCC----AATCCAGTCCTGACCTGACGTGCCGTCCTCACCTCCACACAAAATTTGGGCCCGCGAG
CCCCACCGGGCAGCCACCCAGGAAGGCGCCC-----------CTGTCGGCCGGCAATCATGCCACGGGACCCACTATTTG
CGGGCCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCACTTTCCCCATTCGCGTCGCGTTCCCCCCTC
CCCTCTTCTTCCCCCGAATCCCCAATCCCACGCTCCTCCCCCCTCCCCTCCCCTGGATCTCCTCCT-----CCCGCCCCG
C-------------------------------------------------------------------------------
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---------------------------------------CCCCACCTCCCCGCCCACGGGAGCCCCGCCGCCCCTCGCCG
CTCGCCCGTGGGCCCCGCCGCCTCCCGCTCCGCCGCGCCACCCAGCTCCGAGGCTTCCAGGAAGGAGAGGGGAGGAGAAG
TTCGAATCTTTGATGCCCGGCACCCGATGGCGACGCCGACCGTAGAGAAGCCCGACGGGGTGGAGATCCGCGAGGTGTGG
GCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGACTACCCCTACGTCGCCATGGACACCGAGTT
CCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTTCAACTACGCCACGCTCAAGGCCAACGTCG
ACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCGGCCTCCCCGCCCTCGGCCCGGACGGCCGC
CCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTCGCCGCCGCGGACTCCATCGACCTGCTGCG
CCGCAGCGGGATCGACTTCGCCCGCCACGCCGCCGAGGGGGCCGACTCGCGCCGCTTCGCCGAGCTGCTCATGTCCTCCG
GCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACGACTTCGGCTACTTGCTCAAGCTGCTCACG
GGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATTTACTTCCCCGTGATCTACGACATCAAACA
CCTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGAGCTGCTCGACGTCGAGCGGGTCGGGATCT
GCCATCAGGCGGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGCTCAAGGAGTCATACTTCGGCGGATTAACT
GAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACCACCTCTGTTCACTGAGTAATGGATAGTTA
AATAAATGATGAACTATTTATGAGAGAAAGGAGAAACCTGTCTGGTGAATGTGTGATGCCTGATTATATCCTCTTGCTTG
ACACCGAAAAAGGTACCACTTTTCCCTCAATTGTGATACTCCTCAGTGAGTTTGTTTAGGTTAGATGACTGCGTTTTTGT
TGTTTGATTTTGCGTGCTGAAGTTGATGGAATGATGAAACACCCTCTAGATACTGGTTAAAGTCCACCTATGCTGATTCT
TCACACGTCCTCTAGAGTTACACACTT----GATAGCAAAAAGAACACTTCTTTTGTCATGTACTCCCTCCATCCCACAC
TATAAGATCGTTTTTCAAGCAAACATAGCTTGAAAAACAATCTTATATTGTGGGACGGAGGGAGTATATAGTGTTGATTG
CTTACTGTTCTGTGTTCCGTTTGAGGAATCACCTACCCCTCTTCATGGGC-----------TAACCATGGCAGTCAAGGA
CTCCAATTCTATCACTAGTTGGTTCAAGTTATCGT---------------------------------------------
-------------------------------------------------AGTATTACATAGGTCCATGCTTCCGTACCAA
TTGGGTTCTTTTTGGTATCGAAATTACCAAGGACTGTATTTTGTGAAGAGGG----------------------------
-----GAGATGACCAAAGT-TTTTTCCCCCAGTCATGAGCTCAGAC--TCTGTGTCATAGACCAGGATAAGCTCAGCTGT
TGTTCATATACATTGTCAGGATTCTGTTTAGCTTCATAATTA--------------------------------------
----GCATTTAGCAAGGACTGTCTATTATGTAAAGAAGAGCAATCATACCGAAATAAGTCAAGAAACTTTCCCTAGAATT
GATCCCAAGTCTCAACATCATGTACTTATGTACCAGGACCAG--------------------------------------
-------GTCAGTAGTCTGTCTGAGGATCAGAGGATGATTTCAGATCCTACCCTCTCTGGTAGTCTGGTCACACCCATCA
ATCCATCCTCTTCTTTGTTATCCTCTCTCGTTCAGTCATACACTT--GGTAGTTTTGAGAGCGACCTCTCTAATTATGGT
TATATAAATGAACTGTTGCT
>chr5D_1
AATATCAGTATTTGGAGCAAAATGCTATGATGTGTGAACCCGCACCTTTGACGTTGGTTTAATATCCTGGTTCAATGTAA
TGTATCTTGCTCTTATTTTCATGATAGTTGATGACTCACATGGAAACTAAATTAACATGGCCTAGAGCTTTTTTTGTGTG
TGTCTCATGGCGTTCCATTTTTGCTACCATGACATATTTTTCTTTCATGGGAAACATGTTTTATTGCCATGGTTGTACTT
CTTCGCAGCGACGGTCTGTTTTTAGCGTCATAGGATCTTTTTT--CACAAGAGTCGGGTTTCGTTGCTATAGTGTATCTT
TTCACCGCGACAGCCTACTTTTACCCTTTTTTAAGT-TAACATATTTTTACTCTGATGTTAATATATTCGTTGCAAACCA
CGGACATTTTTCATGTGAAGAAGAAGAAGAAGCAGCTAAAGAAAAGCGTAGAGAAATGAAGACTTGCATTGACCAACCCC
AAGTCAAAGAAAACCCTCTTCATGG--------GAAGAAGCAAAACAAAACCAAATTGTTCATGCACACTT-CCCTTGTT
TTCCTTGCTGGTTC---C----AATCCAGCCCTGACCTGACGTGCCGTCCTCACCTCCACACAAAAATTGGCCCCGCGAG
CCCCACCGGGCAGCCACCCAGAAG---GCGCCCCTCCTCAAGCTGTCGGCCGGCAATCATGCCACGGGACCCACCATTTG
CGGGGCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCACTTTCCCCATTCGCGTCGCGTTCCT-CCTC
CCCTCTTCTTCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCCCCACCTCCCCGCCCACGGGAGCCA--CCGCCCCTCGCCG
CTCGCCCGTGGGCCCCGCCGCCTTCCGCTCCGCCGCACCGCCCAGCTCCGAGGCTTCCAGGAAGGAGAGGGGAGGAGAAG
CTCGAATCTTTGATGCCCGGTAGCCGATGGCGACGCCGACCGTAGAGAAGCCCGACGGGGTGGAGATCCGCGAGGTGTGG
GCGGAGAACCTCGAGGCCGAGTTCGCCGTCATCCGGGAGATCGTCGACGACTACCCCTACGTCGCCATGGACACCGAGTT
CCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTTCAACTACGCCACGCTCAAGGCCAACGTCG
ACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCGGCCTCCCCGCCCTCGGCCCGGACGGCCGC
CCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTCGCCGCCGCGGACTCCATCGACCTGCTGCG
CCGCAGCGGGATCGACTTCGCCCGCCACGCCGCCGAGGGGGCCGACTCGCGCCGCTTCGCCGAGCTGCTCATGTCCTCCG
GCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACGACTTCGGCTACTTGCTCAAGCTGCTCACC
GGCTCCAACCTGCCGGACACCAGCTCCGGCTTCTTCGACCTCATCAGGATTTACTTCCCAGTGATCTACGACATCAAGCA
CTTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGAGCTGCTCGACGTCGAGCGGGTCGGGATCT
GCCATCAGGCAGGCTCCGATTCACTGCTGACCGCGCTCTCCTTCAACAAGCTCAAGGAGTCATACTTCGGCGGATTAACT
GAGAAATATGCCGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACCACCTCTGTTCACTGAGTAATGGATAGTTA
AATAAATGATGAACTATTTATGAGAGAAAGGAGAAACCTGTCTGCTGAATGCGTGATGTCTGATTATATCCTCTTGCTTG
ACACCGAAAA-GGTATCACTTTTCTCTCAATTGTGGTACTCCTCAATGAGTTTGTTTAGGTTAGATGACTGAGTTTTTGT
TGTTTGATTTTGCATGCTGAAGTTGATGGAATGATGAAACGTGCTCTAGATACTGGTTAAATCT-ACCTATGCTGATTCT
TCACATGACCTGTAGAGTTTAACACTTGATAGATAGCAAAAAGAACACTTCTTTTGTCATGTACTCCCTCGGTAAAGAAA
TATAAGAGCATTTGGATCACTAGAGCAGTTTTCTAAATGCTCTTATATTTCTTTACAGACGGAGTATATAGTGTTGATTG
CTTACTGTTGTGTGTTCTGTTTGAGGAATCACCTACCTCCCGTCATGGGCAGGCGCATGGCTAACCATGGCAGCCAAGGA
CTCCAATTCTATCACTAGTTGGTTCAAGCTATCTAGTACTCCCTCCGTTCCAAAGTAGATGATTCAACTTTGTGCTAACT
TTATACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGGAATGGAGGGAGTATTATATAGGTCCATGCTTCCATACCAA
TAGGGTTCTTTCTGGTGTCGAACTTACCAAGGACTGTATTATGTGAAGAGGGGCATCATTTAACCATTTATTAGGAGATT
AAGCAGAGATGGCCAGAGA-TTTTTTTCCCAGTCATGAGCTCAGAGTTTCTGTGTCATGGACCAGGATAAGCTCAGCTGT
TGTTCATATATATTGTCAGGATTCTGTTTAGTTTCATAATTA--------------------------------------
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>chr5B_410
TGAAGAA-------------------------------------------------------------------------
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--------------------------AAGAAAAAGCTAAAGGAAAGCATAGAGAAACGAAGACTTGCAATCACCAACCCC
AAGTCAAAGAAAGCCCTCTTCATTA--------GAAGAAGCAAAACAAAACGAAATTGTTCATCCACACTTGCCCTTGTT
TTCCTTGCTGGTTC---CTTCCAATCCAGCCCTTACCTGACGTGCCGTCCTCACCACCACACAAAAATTGGCCCCGCGAG
CCCCACCGGGCAGCCACCCAGGAAGGCGCGCCCCTCCTC---------GCCGGCAATCATGCCACGGGGCCCACCATTTG
CGGGTCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCACTTTCCCCATTCGCGTCGCGTTCCCCCCTC
CCCTCTTCTTCCCTCGAATCCCCAATCCCACGCTCCTCCCCCCTCCCCTCCCCTGGATCTCCTCATCCCGCCCCGCCCCG
C-------------------------------------------------------------------------------
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---------------------------------------CCCCGCCTCCCCGCCCACGGGAGCCA--CCGCCCCTCGCCG
CTCGCCCGTGGGCCCCGCCGCCTCCCGCTCCGCCGCACCACCCAGCTCCGACGCTTCCAGGAAGGAGAGGGGAGGAC-AG
CTCGAATCTTTGATGCCCGGTAGCCGATGGCGACGCCGACCGTAGAGAAGCCCGACGGGGTGGAGATCCGCGAGGTGTGG
GCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGACTACCCCTACGTCGCCATGGACACCGAGTT
CCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTTCAACTACGCCACGCTCAAGGCCAACGTCG
ACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCGGCCTCCCCGCCCTCGGCCCGGACGGCCGC
CCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTCGCCGCCGCGGACTCCATCGACCTGCTGCG
CCGCAGCGGGATCGACTTCGCCCGCCACGCCACCGAGGGGGCCGACTCGCGCCGCTTCGCCGAGCTGCTCATGTCCTCCG
GCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACGACTTCGGCTACTTGCTCAAGCTGCTCACC
GGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATTTACTTCCCCGTGATCTACGACATCAAACA
CTTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGAGCTGCTCGACGTCGAGCGGGTCGGGATCT
GCCATCAGGCAGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGCTCAAGGAGTCGTACTTCGGCGGATTAACT
GAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACCACCTCTGTTCACTGAGTAATGGATAGTTA
AATAAATGATGAACTATTTATGAGAGGAAGGAGAAACCTGTCTGGTGAATGTGTGATGTCTGATTATATCCTCTTGCTTG
ACACCGAAAAAGGTACCACTTTTCCCTCAATTGTGATACTCCTCAATGAGTTTGTTTAGCTTAGATGACTGCGTTTTTGT
TGTTTGATTTTGCGTGCTGAAGTTGATGGCATGATGAAACACCCTCTAGATACTGGTTAAAGTCCACCTATGCTGATTCT
TCACACGTCCTGTAGAGTTAAACACTT----GCTAGCAAAAAGAACACTTCTTTTGTCATGTACTCCCTCCGTAAAGAAA
TATAAGAGCGTTTGGATCACTAGAGTAGTTTTCTAAATGCTCTTATATTTCTTTACAGACGGAGTATATAGTGTTGATTG
CTTACTGTTGTGTGTTCTGTTTGAGGAATCACCTACCTCCTGTCATGGGCAGGCGCATGGCTAACCATCGCAGCCAAGGA
CTCCAATTCTATCACTAGTTGGTTTAAGCTATCTAGTAC-----------------------------------------
---------------------------------------------------TATTATACAGGTCCATGCTTCCATACCAA
TAGGGTTCTTTCTGGTGTCGAACTTACCAAGGACTGTATTATGTGAAGAGGGGCATCATTTAACCATTTATTAGGAGATT
AAGCAGAGATGGCCAAAGATTTTTTTTCCCAGTCATGAGCTCAGAGTTTCTGTGTCATGGACCAGGATAAGCACAGCTGT
TGTTCATATATATTGTCAGGATTCTTTTTAGTTTCATAATTACTCCCTCTGTAAAGAAATATAAGAGCGTTTGATCACTA
CTTAGCATTTAGCAAGGAATGTC-----------------------------AATAAGTCAAGAAACTTTCCCTAGACAT
GATTCCGAGTCTCAACATCATGTA----TGTACCAGGACATGATTCCGAGTCTCAACTGTCCCTAGACATGATTCTGAGT
CTATTATGTCAGTAGTCTGCCTGAGGATCAGAGGATGATTTCAGATGCTGCCCTCTCTGGTAGTCTGGTCACACCCATCA
ACCCATCTTCTTCTTTGTTCTCCTCTCTTGTTCAGTCATAGCACTTGGGTAGTTTTGAGAGCGACCTCTTTTATTATGTT
--TATAAATGAACTGTTGC-
>SNPs
-------S-------S----------S-------------------------S-----------------------SS--
-S------S------S------------------S-S--------------------------------S-----S----
------S-------S-----------S----S------------S----S-----------S------------------
--S-------S-----S--------S-S---------------SS-----------------S--S-SS-----------
-------------S---S-----SS-----S-----S--S-S-----------SS----S-----S--------------
----S-----------------S-----------------------------S-----------------------S---
------------------S-S-S--SSSSSSSS-----S----------------------------S------------
--------------SSS------------S------------------------------------S----S--------
-----------------------------S--------------------------------------------S-----
----S---------------------------------------------------------------------------
----------------------------------------------------------------S---------------
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----------------------------------------------------------------SSS-------------
------------------------------------S-------------------------------------------
S-------------------S-S---------------------------------------------------------
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-------------------------------------------------------------------------------S
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-S------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
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----------------------------------------------------------S---------------------
---------------------------------------------S----------------------------------
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-----------S--------S--------------------------------------------------S-SSSSS-S
-------S-----SSSSSS-S-SSS---S--SSS---SSS---------SSSSS--S--S--------------------
---------S-------S-------------------S-S-S-------------------------------S------
----------------------------S----SS---------------------------------------------
--------------------------------------------------------S----------------S------
-S---------S----S-----S-----------------S---------------------------------------
-----------S------S------SS------------------S------------S---------------------
----------S--------------------S------------------------------------------------
------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------SS-
---S--S-----------------SSSS-----------SS---------------------------------------
-------------------S--------------------------S--S------------------------------
-S-----S-----------S--------S-----------SSSS-------------------------S-S------S-
SS-----------------S
>forward_1303
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---GAATCTTTGATGCCCGGCAC---------------------------------------------------------
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>reverse_2907
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--------------------------CCCCAGTCATGAGCTCAGAC----------------------------------
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