>input_sequence_67404
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
AAACCACAACACACGGGCCAGCGAGCATGGCTACCACCACCAGCTCTGCCGTCCTCCTCATCGCCCTGGTCGCCCTGGCT
GGCCTCGCCGACGTCCTCGCCGTTCATGCTCACACGGCGTTGGCGGTAAAGACGACGACGGAGCGCCCA---ACAATGGA
GCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGTTCTGCGCATTCAAGTGCATGATCCCCTGCG
TGGTCGTGTGCCCCACCCTGCCGCTCTGCATCACCAACTGCGACCTCAAGACCCTTGGCTGCATGCTCCGCTGCGGCATG
ATGCCCTCACCCAAGCCCAAACCCAAACCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCACCTGCCCCGCCGGCGCCGGG
CCTGCACCTAGACGCCCACAAAATTACCAGCAGGCATGATTGATCGGTACATTGTCTCAAAAACACAAGATTGGTTAGTA
CCAGTGATATGAGTGGTATTCTTACTAAAAAGAAGGCACACATGCATACATATATATATATATATATATATATATATAGA
CCAATTTGTGTAATCCGATGATGTATTGGTTGTGCATTTGA-------------CAATGGATATTTAGATGTGTACGTAA
TTCTAGAATTAAAACTTGTTGTACCAAGCATATATCCATCTTCTAGCGCTAATTTTTTTAAATAATACATTTTTTTAATT
AATTTTCATAAATATTACGCTGGATAAAAAAATTCAAAAATAATATTTCAAAAATATTACGCTGGATAAAAATGTATCAT
CGGATTTATTTTTGAAATTTTTTTACCCAGCGTAATATTTATGAAAATTAATAAA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>chr4D_1_TraesCS4D01G002200
TACAAAGCACCCCCACAAAGATAAGACATTGGGCATCTGGAAGGCCTATGAAGCAAGAATTGTTTTGGAAGTTCCTCCAT
AAAGAGAGGAAGAGACATCTTCTCTATAGTTGCAATGGATAGCGGGATGACTATGTTGCTGCGGTGGAACTCAT-CGCCA
TTCTAGATCAGGAGGATAAGATCCCCTCTTCTTCTTTTTTCCCAAGGGAGCTAGGAAATGAATTGTATGGGGTGAGATTT
GCATGGTTAATGGACTGACCCTTCTCCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCTG---------------------------CTTCATCCTAATTACAAATAAAAAAATG--AGTCAC
CTCAACCCGGCCCCTAAAGTTCCTGTAAATCCTCGGTAGCTGTAGCATTGCTCCTTGGACACAGTGAAAAGGCATGCTCC
AG-GGATCAAGAGACCGGGGCACATCACTATACGTCATCCCACGGTTGCGGACTGATCTTAGGGAAAGCGGACGGACATG
TTTTGAAGATGATGAGAATTAACATAGAGGATTCAATGATGCCTTCTCCAATTAGTATAG--TACTATAAAATAAGAAAG
ATGTACTGGTATTGTCCAGCGAACGAACTGTTATTTGCTACAT-----ATTTCTTGGTTCACACATATTTCATGCATCCA
TATATTATACGTTAATCATCGCCATGCCGTGTGTGTGCGCGTGCGCGAGTGTGTGGAAAAGCAACAATAGAACGAACACA
CACAAAATGCAAGTCGAGTTTGATATGCTAAACCCAGCCCTATATAAACTATCTTACGAGTGAAGAGCTCACTACTGCAC
AAACCACAACACACGGGCCAGCGAGCATGGCTACCACCACCAGCTCTGCCGTCCTCCTCATCGCCCTGGTCGCCCTGGCT
GGCCTCGCCGACGTCCTCGCCGTTCATGCTCACACGGCGTTGGCGGTAAAGACGACGACGGAGCGCCCA---ACAATGGA
GCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGTTCTGCGCATTCAAGTGCATGATCCCCTGCG
TGGTCGTGTGCCCCACCCTGCCGCTCTGCATCACCAACTGCGACCTCAAGACCCTTGGCTGCATGCTCCGCTGCGGCATG
ATGCCCTCACCCAAGCCCAAACCCAAACCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCACCTGCCCCGCCGGCGCCGGG
CCTGCACCTAGACGCCCACAAAATTACCAGCAGGCATGATTGATCGGTACATTGTCTCAAAAACACAAGATTGGTTAGTA
CCAGTGATATGAGTGGTATTCTTACTAAAAAGAAGGCACACATGCATACATATATATATATATATATATATATATATAGA
CCAATTTGTGTAATCCGATGATGTATTGGTTGTGCATTTGA-------------CAATGGATATTTAGATGTGTACGTAA
TTCTAGAATTAAAACTTGTTGTACCAAGCATATATCCATCTTCTAGCGCTAATTTTTTTAAATAATACATTTTTTTAATT
AATTTTCATAAATATTACGCTGGATAAAAAAATTCAAAAATAATATTTCAAAAATATTACGCTGGATAAAAATGTATCAT
CGGATTTATTTTTGAAATTTTTTTACCCAGCGTAATATTTATGAAAATTAATAAAAAATGTATTATTTAAAAAAAATTAG
CTCTTCTAGCAGCTCAAGTAGCTTGGCATGTGGGCCAGCCGTCTGTTAGGCCCACATGTCACTGACCCAACTGCAGGTGC
AGTTATGGCAATGAAGCTCAGTCCGATTCGTGCTAATGGTACGGGCCTGGCAGCCCTTGAAAAGGAACCGTACCATTAGC
ATTTTGTTCCTGCAGCCAATGTCCTGGCTCATTCCTTGGCAGCTGCTGCTCTTGCTAGTGTGATGCTATCTGTTAAAATT
ATTGCATTTAAAATATTCAACCTGCATAGAACCATTGTGGCTTCCAAGAAGCATCCGTAAAAATTATATTCTCTTCCGAT
AGTTTGGAGATCAAAACTACTACACGTATGAACATGACTTGTCCGATTTGGTACGATGCAACATCCAGCCGTTGCTGGAC
TTAGAGTCCAACTGATATACGGGTTGATCTGCTCCATCGGATATAATTCGTATGTGAATTGTCGTACGTATAGCATGGTT
CTTTGGAGATATCAATTGTATTCCCTTGCATATAGTTGTTTCCTTCATATGAGCTAGCTCTCTCATGATACACTTGCATT
TCCTTGTTCACCTTTGTTTGGGTTTCTATTTCCAAACTGTTAATTATTGCTTGGGCTGCATGAAAAACCTGTATAGTAGA
CTGATTAAGGGTCTGCATCTTGTAAATATAACGTGCACGGGCATCTTACGGCTTAATTGATATAGCAAAATTTTAACTAT
TATTGCCATGGCAATTTTTACCTTAATTGATATAGCAAATTTACCTAAATCGCCATGCAATTTTTAACCTATTACTGCCA
ATGTATCATCATCTAAACTACTCGGTTCAATGACTTGTATCAATCAACAGGAGACTATGAACTGCCGCCGACGGAGCCCG
AGTACCGCACCGCCGCCACCGACGGAGTCGGCGTACGGCATCGAGTCGCCGACGGAGCCGCAGTTCGGCACCGCGCCGCT
GCCGCCCCTCCATCA
>chr4A_31
------------------------------GGGCATCTGGAAGGCCTATGAAGCAAGAATTGTTTTGGAAGTTCCTCCAT
AAAGAGAGGAAGAGACAGCTTCTCTATAGTTGCAATGGATAGCGGGATGGCTATGTAGCTGCGGTGAAACTCGTCCGCTG
TTCTAGATCAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATTTTAGGGTTTGTCCCACTTCATCCTAATTATTTACAAATCAAAAGAAGCCAC
CTCAACCTGGCCCGTGAAGTTCCTGTAAACCCTCCATAGCTGTAGCATTGCTCCTTGGACACAATGAAGAGGCATCCTCC
AG-GGATCGAGAGACCGAGGCACATCACTATACTTCACCCCACGGGTGCGGACTGATCTTAGGGTAATCGGACGGACATA
TTTTGAAGATGATGAGAATTAACGTAGGGGCTTCAATGATGCCATCTCCAATTAGTATAGTATACTATAAAATAAGAAAG
ATGCACTAGTATTGTCCATCGAACGAACTGTTATTTGCTACAT-----ATTTCTTGGTTCACACATACTTGATGCATCCA
TATATTATACGTTAATCATCACCATGCCGTGTGT------GTGCGCGAGTGTGTGGAAAAGCAACAATAGAACGAACACA
CACAAAATGCAAGTCGAGTTTGATACGCTAAACCCAGCCCTATATAAACTATATTATGAGTGAAGAGCTCACTAC---AC
AAACCACAACATAAGGGCTAGCGAGCATGGCTACCACCACTAGCTCTGCTGCCCTCCTCATCGCCCTGGTCGCCCTGGCT
GGCCTCGCCGACATCCTCGCCGTTCATGCTCAGGCCATGGTGGCCGTAAATACGACGATGGAGCACTCGAC------GGA
GCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGATCTGCGCATTCAAGTGCATGATTCCCTGCG
TGATCGCGTGCCCCACCCTACCGCTCTGCATCACCAACTGCGACCTCAAAACCGTTGGCTGCATGTTCCGCTGCGGCACC
GCGCCCTTGCCC---------CCCAAGCCCAAACCCAAGCCCAAGCCCAAGCCCAAGCCACCTGCCCCGCC------TGG
CCTGCAGCTAGACGCCCACG-----ATCACCATGCATGATTGGTTGGCACATTATCTCAAAAACAAAAGATTGGTTGGTA
CCAGTAAGTATATACGTA--CTTACTAAAAAGAAGACACACAT------------------------------ATATAGA
CCAATGTGTGTAACCCGAT-ATATGTTGGTTGTGCGTTTGACATGAAGAATCTGCAATGGATTTTTAGATGTGTATGTAA
TTCTAGAATTAAAACTTGTTGTACCAAGCATATATCCATCTTCTAGCAGCT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>chr4B_604
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ATGCTCC
AGAGGATCGAGAGACCGAGGCACATCACTATACGTCATCCCACGGTTGCGGACTGATCTTAGGGTAAGCGGACGGACATA
TTTTGAAGATGATGAGAATTAACGTAGAGGCTTCAATGATGCCTTCTCCAATTAGTATGGTG-------AAATAAGAAAG
ATGCACTAGTATTGTCCAGCGAATGAACCGTTATTTGTTACATATTAAATTTCTTGGTTCACACATATTTCATGCATCCA
TATATTATACGTTAATCATCACCATGCCGTGTGT------GTGTGCGAGTGTGTGGAAAAGCAACAATAGAACGAACACA
CACAAAATGCAAGTAGGGTTTGACACGCTAAACCCAGCCCTATATAAACTATCTTACGAGTGAAGAGCTCACTACTACAC
AAACCACAACACACGGGCCAGCGAGCATGGCTACCAGCACCAGCTCCGCTGCCCTCCTCATCGCCCTGGTCGCCCTGGCT
GGCCTCGCCGACGTCCTTGCCGTTCATGCTCACGCCGCGGTGGCGGTAAAGACGATGATGGAGCGCCCAACAACAATGGA
GCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGATGGTGATGTTCTGCGCATTCAAGTGCATGATTCCCTGCG
TGGTCGCGTGCCCCGCCCTGCCGCTCTGCATCACCAACTGCGACCTCAAGACCCTTGGCTGCATGCTCCGCTGCGGCATG
ATGCCCTCGCCCAAGCCCAAGCCCAAGCCCAAACCCAAGCCCAAGCCCAAGCC------ACCTGCCCCGCC------GGG
CCTGCACCTAGACGCCCTCG-----ATCACCATGCATGATTGATTGGTACATTATCTCG-AAACAAAAGATCGGTTGGTA
CCAGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
-----------------S-------------------------------S------S---------S-----S-----SS
-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------SSSS-----------------------------------------SSS-S---SS--SS----S---
-------S-----S-S-------------S----SS---------------------------S----S-----------
--------S--------S----------------------------------------------S--------------S
-----------------------S------S-------------------------------------------------
---S---S------------------------------------------------------------------------
--------------------S-------------SSSSSS----------------------------------------
-------------------------S--------------------------------------------------S---
-------------------------------------------------S-S----------------------------
---------------------------------S-S---S------------------S---------------------
------------------------------------------------------------------------S-------
------S-------------------------------------------------------------------------
--------S-----------S-----S-----S--------------------------------------SSSSSS---
-------------------SSSSSS-S--S--S-----------S--------S-----------S----------S---
-----S-SSSS-SSS---SS---------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-----S-------S-----S--S-S----------S--------------------------S------------S----
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_21
-ACAAAGCACCCCCACAAAGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_1960
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGTCTGTTAGGCCCACATGT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
