>input_sequence_67355
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--ATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
AGCCATGCCGGTATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAA
AAATGCATGCACCACAAGAAGGTACCGTGATGCCGGTCAATGATAGTTCCATGATTCCATACCAATCTAGTGCAGAACTC
GCACCACTACCCCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTC------------------------------
---------------AGACAAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAAATCCTTTTTGGAATGAATTCAACT
CGTCACATCAGATGCA-GAATTTGTCCACGGAGGCTTCATCATTCACACCCTTACTCCAAACAGAGCCAAATTCAATTGT
TCATTCCCATCTTTACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGGCCACGAGGGATGTTTCCGAGGTAA
GCTCACTAC--CGTCTAGGTTTCTTTGCTCTTCTCAAAAGATTCA-CCCCTTCACACCAAGTACTATGCAGAAGCAGATG
AAGATACAAGATGAAAGATTATCAAATGCTGATCCATATGGTGTACCTGCCCCTGCTTCTCCTACCATGCAATCCTCACA
TATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTATGCATGATTCTACAACCC
CACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCTACAAGGTTGA--------------------------------------------------
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>chr3A_1_TraesCS3A01G112400
TGAGCCCCACCACTGGAGGTTTCCTTGACCATGTTATGGTTTTCCCTTGGCCATAATGGAGTCTTCTTTCCCTTCTCCTT
TGATCCCTGATCTAGGGGTCCTGCCAGTAATGGTTTCCCCTATGGTGGCCTCGCCTGTTCCCGAGTCGGACGATTGGTTG
AACGCTACCCTGCTGACTCCTTAGCTAGTGGTTCTAATGGCAGCTGATGCAA-CGCGCGGGCTAACGCCCAGCATCAACA
TTGCCAATGCTGAGGGGGGATAAGAGGCAATGAAGGAGGCACCAAGGTAGAGGAAGAAGGAATTGATGT-GCTACCTAGG
AGCATAAGGTTGATATGGTTGGATATTTACATGTATT-AAAAAATATTTCAATGATGAAGGCAATCTTGCGGTTACATCA
CAACATATTTGGCTATATAAAACTGATTTTAAGAAAAAGACATATATGGACAATCTTTTCTCTCTCTCTCTCCCTCCCCA
--------------------TGTGTGTGTGTCTCAAAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATAT
AAGTTAAT---TTTTTTTGAAAGCCGAGAATAAACTGACATCGCTTG-TTAGGAAGACACATGCAACTTTGCATCAACAT
ACATGTTT-TTTCCTTCCAATAAAAGAGAATATGCACGGGACTCAGGCTACAATAATCATACCATATATTGTACATGATT
AATGCCTGGTTTTATGAAAACCAGTGGGGAGACCAGATTTACCAACAAATCCTAGAAGATCTCATTAATCATTAGAAATT
ATAATATCATATCTCCAATATATTGTATTAATAGCAATTATTAAA------ATCCAAATATTCTTGTTAATGAGATAATT
AAATAGTACATGAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCCACATAAGC
ATCAAA-GGCATCCTAGCACATGCATCTCTATTCTCCATAACATCTACTACA-------AATTGTTGATACTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
AGCCATGCCGGTATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAA
AAATGCATGCACCACAAGAAGGTACCGTGATGCCGGTCAATGATAGTTCCATGATTCCATACCAATCTAGTGCAGAACTC
GCACCACTACCCCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTC------------------------------
---------------AGACAAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAAATCCTTTTTGGAATGAATTCAACT
CGTCACATCAGATGCA-GAATTTGTCCACGGAGGCTTCATCATTCACACCCTTACTCCAAACAGAGCCAAATTCAATTGT
TCATTCCCATCTTTACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGGCCACGAGGGATGTTTCCGAGGTAA
GCTCACTAC--CGTCTAGGTTTCTTTGCTCTTCTCAAAAGATTCA-CCCCTTCACACCAAGTACTATGCAGAAGCAGATG
AAGATACAAGATGAAAGATTATCAAATGCTGATCCATATGGTGTACCTGCCCCTGCTTCTCCTACCATGCAATCCTCACA
TATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTATGCATGATTCTACAACCC
CACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCTACAAGGTTGATCTTCCCATGTTGC--TTGACATCCCATGCTTGATACTTGTGGGACCAAT
-TTTTTCCTAAGCACACAATGGATGAAGGCACGGTGGTTTCACCGCAAGTGGAGAAAATTTATAAGAGGTTATTTATATT
TGGAAACAAAATTATCAATAGAGTAGCATAAGAGTGAAGATATGTTATGTGGGTGCGAAACTATTGACAATTAT---TT-
TCTTGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAAC--AGTTATCTTTGATGGTTGTGTACTACTCCCTCTGTTC
CAAAATATAAGCTGCATTTGTTTTTGTGCCAGTCAAATTTATGTACATTTGCCTAGGATTGAAGAATAAAATATCAACAT
CTGCATTGCAAAAATAAAACAAAATTATGAAAATAGTTTTGATGATAGAGCTAATGATACAAATTTGGTATTGCGGATAT
AGGTAATTTTTTCAAAAATATTCGTCAAACATGCACATGTTTGACTTTTGAGAAAACTAATACACCTTCTA-TTTTTTGA
ATGGAGACACCTTCTATTTTGAAACAGATTGGTGGAGTATGTTAATTATCTTTCCCTTTTTATTAATTAAGAAATCACGC
TTTTCAATGAAGGTTTGCTAGAACTTGGTAAAATATATGTTTCTTACCACAACTATTAAATTTATTTAAAGTTCAGTAAG
AGTCCGTGATAATTTGCCATATGAAGAGTGAGAGAATCTCAACCATTTTTTA-TTAATGAATAGTTTCAGAATTGGCGAT
ATCATATACCTATAACATGGATACTCAAATATGAGCACCACCTAGTGACTAAATCACATTTATGAATTTTCCCCATGAAC
TTGCATATAA---ATTGTACATAGCTACACATAAAAAA-TACTGCATAAATAAATTTAAATTATAAAAGCTAACCCATGC
TGCTTCTATAGATGTTGCATATAGATGAACAAA-GAAAACATACACTCAAAAACAATTTTCGATCCCTAAGAGCCGAAAA
AAGCCT
>chr3A_1
TGAGCCCCACCACTGGAGGTTTCCTTGACCATGTTATTATTTTCCCTTGGCCATAATGGAGTCTTCTTTCCCTTCTCCTT
TGATCCCTAATCTAGGGGTCCCGCAAGTAATGGTTTCCCCTACGGTGGCCTCGCCTCTTCCTGAGTCGGACGATTGGTTG
AACGCTTTCCTGCTGACTCCTTATCTAGTGGTTCTAATGGCAGCTGATGCAA-CACGCGGGCTAACGCCCAGCATCAACA
TTGCCAATGCCGAGGGGGGATAAGAGGCGGCGAAGGAGGCACCAAGGTAGAGGAAGAAGGAATTTATGTTGCCACCTAGG
AGCATAAGGTTGATATGGTTGGATATTTACATGTATT-AAAAAATATTTCAATGATTAAGGCAATCTTTCGGTTACATCA
CAACATATTTGGCTATACAAAATTGATTTTAAGAGAAAGACATATATGGACAATCTTTGATCTCTCTCTCTCTCTCGCTC
TCTCCCTCTCCCTCCTCA----TGTGTGTGTCTCAAAGATCCATTAGCAATACTAGTTTTCACCTATTGTGCAATCATAT
----AAGTTAATTTTTTTGAAAGCCGAGAATAAACTAACATCGCTTGTTTAGGAAGACACGTGCAACTTTGCATCAACAT
ACATGG-T-TTTCCTTCCAATAAAAGAGAATATGCACGGGACTCAGGCTACAATAATCATACCATATATTGTACATGATT
AATGCCTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAAATCCTAGAAGATCTCATTAATCATTAGAAATT
ATAATATCATATCTCCAATATATTGTATTAATAGCAATTATTAAA------ATCCAAATATTCTTGTTAATGAGATAATT
AAATAGTACATGAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCTCACATAAGC
ATCAAA-GGCATCCTAGCACATGCATCTCTATTCTCCATGACATCTACTGCA-------AATTTTTGATACTGCTAGTAG
CTATGGATCCTAATGGCTCATATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
AGCCATGCCGGTATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAA
ACATGCATGCACCACAAGAAGGTACCGTGATGTCGGTCAATGATAGTTCCATGATTCCGTACCAATCTAGTGCAGAACTC
GCACCACTACGCCCACAGCTGGGTGATACAATCCCTATTCCTTTATCCTC------------------------------
---------------AGACGAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAAATCCTTTTTGGAATGACTTCAACT
CATCACATCAGATGCAAAAATTTGTCCACGGAGGCTTCATCATTCACACCCTTACTCCAAACAGAGCCAAATTCAATTGT
TCATTCCCAACTTAACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGGCCACGAGGGATGTTTCCGAGGTAA
GCTCACTAC--CGTCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACACCAAGTACTATGGAGAAGCAGCTG
AAGATACAAGATGAAAGATTATCAAATGCTGACCCATATGGTGTACCTGCCCCTGCTTCTCCTGCCATGCACTCCTCACA
TATTCTAAGAGAAG-TAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTGTTATTATGCATGATTCTTCAACCC
CACATAAATATACATGAAAGATTTGCAATGCCACATTCAACACATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAACCTACAAAGTTGATCTTCCCATGTAGA--TTGACATCCCATGCTTGATACTTGTGGGACCAAT
-TTTT-CCTAAGCACACAATGGATGAAGGCACGGTGGTTTCACCGCAAGTGGAGAAAATTTATAAGAGGTTATTTATATT
TGGAAACAAAATTATCAATAGAGTAGCGTAAGAGTGAAGATATGTTATGTGGGTGCGAAACTATTGACAATTAT---TT-
TCTCGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAAC--AGTCATCTTTGATGGTTGTGTACTACTCCCTCATTTC
CAAAATATAAGGTGCATTAGTTTTTGTACCAGTCAAACTTATGTACATTTGACCAGGATTGAAGAATAAAATATCAACAT
CTGCATTGCGAAAATAAAATAAAATTATGAAAATAGTTTTCATGATAGACCTAATGACACAAATTTGGAATTGCAGATAT
TGGTAATTTTTTCAAAAAAAATCGTC-AACATGCACATGTTTGAATTTTGAGAAAACTAATACACCTTCTATTTTTTTGA
ATGGATACACCTTCTATTTTGAAACACATCGGTGGAGTATGTTAATTATCTTTCCCTTTTTATTAATTAAGAAATTACGC
TTTTCAATGAAGGTTTGCTAGAACTTGGTAAAATATATGTTTCTTACCGCAAGTATTAAATTTATTTAAAGTTCTGTAAG
AGTCCTAGATAATTTGCCATATGAAGAGTGAAAGCATCTCAACCATTTTTTA-TTAATGAATAGTTTCAGAATTGGCGAT
ATCATATACCTATAACATGGATACTCAAATATGCGCACCACATAGTGACTAAATCACATTAATGAATTTTCCCCATGAAC
TTGCAT---A---ATTGTACATAGCTACACATAAAAAAATACTACATAAATAAATTTAAATGATAAAAGATAACCCATGT
TTTTTCTATAGATGTTGCATATAGATGAACAAAAGAAAACAGAAACTCAAAAACAATTTTCGATCCCTAAGAGCCGAAAA
AAGCCT
>chr3A_1
TGAGCCCAACCACTAGAGGTTTCCTTGACCATGTTATGATTTTCCCTTGGCCATAATGGAGTCTTCTTTCCCTTCTCCTT
TGATCCCTGATCTAGGGGTCTCGCCAGTAATGGTTTCCCCTATGGTGGCCTCGCCACTTCCCGAGTCGGGCGATTGGTTG
AACGCTGCCTTGCTGACTCCTTAGCTAGTGGTTCTAATGGCAGCTGATGCAA-CACAGGGGCTAGCACCCAACATCAACA
TTGCCAATGCCGAGGGGGGATACGAGGCGGCGAAGGATGCACCAAGGTAGAGGAATAAGGAATTGATGTTGCTACCTAGG
AGCATAAGGTTGATATGGTTGGACATTTACATGTATT-AAAAAATATTTCAATGACGAAGGCAATCTTTCGGTTACATCA
CAAGATATTTGGATATATAAAACTGATTTTAAGAGAAAGACATATATGGACAATATTTGCTCTCTCTCTCTCTCCCTCTC
CCTCCCTCCCTCCCC------GTGTGTGTGTCTCAAATATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATAT
AAGTTAA-----TTTTTTGAAAGCCGAGAATAAACTGGCATCGCTTGTTTAGGAAGACACATGCAACTTTGCATCAACAT
ACATGTTTCTTTCCTTCCAATAAAAGAGAAGATGCACGGGACTCAGGCTACAATAGTCATACCATATATTGTACATGATT
AATGCCTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAAATCCTAGAAGATATCATTAATCATTAGAAATT
ATAATATCATATCTCCAATATATTGTATTAATAGCAATTATTAAA------ATCCAAATATTCTTGTTAATGAGATAATT
AAATAGTGCATGAGTCCATGCATGTCTATAGTTTTGTAAGATCCTTATAAATATCACGTTATGTAATAGCCCACATAAGC
ATCAAA-GGCATCCTAGCACATGCATCTCTATTCTCCATAACATCTACTGCA-------AATTGTTGATACTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACAAC
AGCCATGCCAGTATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCAATAGGAAATTCCTCAACAA
ACATGCATGCACCACAAGAAGGTACCGTGATGTCGGTCAATGATAGTTCCATGATTCCATACCAATCTAGTGCATAACTC
GCACCACTACCCCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTC------------------------------
---------------GGACGAAAAAGGAATGTTCTCGCATGAAGGCTTCCTCACAAATCCTCTTTGGAATGACTTCAACT
CGTCACATCGGATGCA-GAATTTGTCCACGGAGGCTTCATCATTCACATCCTTACTCCAAACAGAGCCAAAATCAATTGT
TCATTCCCAACTTAACACCAATGGAGTGTTTCATGATGGTTCACTCTTTAAGATGGCCATGAGGGATGTTTCTGAGGTAA
GCTCACTAC--CGTCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACACCAAGTACTATGCAGAAGCAGCTG
AAGATACAAGATGAAAGATTATCAAATGTTTATCCATATGGTGTACCTGCCCCTGCATCTCCTGCCATGCAATCCTCACA
TATTCAAAGAGAAGATAAAATCCTTCTAGTTGGCCCAAATGGAATTTCTGATAGTGCTATTATGCATGATTCTACAACCC
CATGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAATCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCGACAAAGTTGATCTTCCCATGTAGC--TTGGCATCCCATGATTGATACTTGTGGGACCAAT
ATTTT-CCTAAGAACACAATGGATGATGGCACGATGGTTTCACCACAAGCGGAGAAAAATTATAAGAGGTTATTTATATT
TGGAAACAAAATTATCAATAGAGTAGCGTAAGAGTGCAGATATGTCATGTGGGTGCGAAACTATTGAAAATTAT---TTT
TCTCGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAATAGAGTCATCTTTGATGGTTGTGTATTACTCCCACGATTC
CAAAATATAAGGTGCATTAGTTTTTGTGCTAGTCAAACTTATGTACATTTGACCAGGATTGAA-AATAAAATATCAACAT
ATGCATTTCAAAAATAAAATAAAATTATGAAAATAGTTTTCATGATAGACCTAATGACACAAAGTTGGTATTGCAGATAT
TGGTAATTTTTTCAAAAAAAATAGTCAAACATGCACATGTTTGACTTTTGAGAAAACTAATACACT--------------
-----------TTCTATTTTGAAATAGGTCGATGGAGTATGTTAATTATCTTTCCCTTTTTATTAATTAAGAAATCACAC
TTTTCAATGAAGGTTTGCTAGAACTTGGTAAAATATATGTTTCTTACCGCAACTATTAAATTTATTTAAAGTTCAGTAAG
AGTCCCTGATAATTTGCCATATGAAGAGTGAAAGCATCTCAACCATTTTTTA-TTAATGAGTAGTTTCAGAATTGGCGAT
ATCATATACCTATAACATGGATACTCAAATATGAGCACCACCTAGTGACTAAAACACATTAATGAATTTTCCCCATGAAC
TTGCATATAA---ATTGTACATAGCTACACATAAAAATACTGCA------------------ATAAATGCTAACCCCTGC
TTCTTCTATAGATGTTGCATATAGATGTACAAAAGAAAACAGACACTCAAAAACAATTTTCGATCCCCAAGAGCCGAAAA
GAGCCT
>chr3D_1
TGAGCCCCACCACTGGAGGTTTCCGTGACCATGTTACGATTTTCCCTTGGCCATAATGGAGTCTTCTTTCCCTTATCCTT
TGATCCCTAATCTAGGGGTCCCGCTAGTAATGGTTGCCCCTACGGCGGCCTCGCCTCTTCCCAAGTCGGACGATTGGTTG
AATGCTGCCCTGTTGACTCCTTAGCTAGTGGTTCTAATGGCGGCTGATGCAAACGCGCGGGCTAACACCCAAAGTCAACG
ATGCCAATGCCGAGGGAGGATAAGAGGCGGCGAAGGAGGCACCAAGGTAGAGGAAGAAGGAATCGATGTTGCTACATAGG
AGCATAAGGTTGATATGGTTGGATATTTACATGTATTAAAAAAATATTTCAATGATGAAGGCAATCTTTCGATTATATCA
CAACATATTTGGATATAT-AAACTGATTTTAAGAGAAAGACATATATGGACAATCTTTGCTCTCTCTCCCTCTCTCCCTC
TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTCTCAAAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCCATATAT-
------CTTAATTTTTTTGAAAGCCGAGAATAAACTGACATCGCTTGTTTAGGAAGACACATGCAACTTTGCATCAATAT
ACATGTTTTTTTCCTTCCAATAAAAGAGAAGATGCACAGGACTCAGTCTACAATAATCATACCATATATTGTACATGATT
AATGCCTGGTTTTATGAAAACCAGTGGGGAGACCAGATTAACCAACAGATCCTAGAAGATCTCATTAATTATTAGAAATT
TTAATATCATATCTCCTATATATTGTATTAATAGCAATTATTAAA------ATCCAAATATTCTTGTTAATGAGATAATT
AAATAGTACACGAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCCACATAAGC
ATCAAA-GGCATCCTATCATATGCATCTCTATTCTCCATAACATCTACTGCAATCTGCAAATTGTTGATATTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
AACCATGCCGATATTGAATGATTTCGTAGACCTTGAATCCCCATCATCATATTCACCTTCGATAGGAAATTCCTCAACAA
ACATCCATGCACCACAAGAAGGTACTGTGATGTCGGTCAATGATAAATCCATGATTCCATACCAATCTAGTGCAGAACTC
GCACCACTACCCCCACAACTGGGTGATACAATCCCTATTCCTTTATCCTC------------------------------
---------------GAACGAAAAAGGAATGTTCTCGCATGAAGACTTCCTCACAAATCCTTTTTGGAATGACTTCAACT
CATCACATCAGATGCA-GAATTTGTCCACGGAGGCTTCACCATTCACACCCTTACTCCAAACAGAACCAAATTTAATTGT
TCATTCCCAACTTAACACTAATGCGGTGGTGGATGATGGTTCACTCTTTAAGATGGCCACGAGGGATGTCTCCGAGGTAA
GCTCACTAC--CGTCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACACCAAGTACTATGCAGAAGCAATTG
AAGATACAAGATGGAAGATTATCAAATGCTGATCCATATGGTGTACCTGCCCCTGCTTCTCCAGCCATGCAATCGTCACA
TATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTATGCATGATTCGACAACCT
CACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCGTATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCTACAAAGTTGATCTTCCCATGTAGC--TTGACATCCCATGATTGATACTTGTGGGACCAAT
ATTTTTCCTAAGCACACAATGGATGAAGGCACGGTGGTTTCATCGCAAGTGGAGAAAATTTATAAGAGGTTATTTATATT
TGGAAACAAAATTATCAATAGAATAGCATAAGAGTGAAGATATGTTATGTGGGTGCGAAACTATTGAAAATTAT---TT-
TCTTGGCTATGTTTGTTTTGCTATTTCCCTATGTAAACAACATAGTCATCTTTGATGGTTGTGTACTACTCCCTTGGTTC
CAAAATATAAGGTGCATTAGTTTTTGTGCCAGTGAAACTTATGTACATTTGACCAGGATTTTAGAATAAAATATCAACAT
ATGCATTGCAAAAATAAAATAAAATT-------TAGTTTTCATGATGGACCTAATGACACAAATTTGGTATTGCAGATAT
TGGTACCTTTTTCAAAAAAATTGGTCAAACATGCACATGTTTGACTTTTGAGAAAACTAATACACCT-------------
------------TCTATTTTGAAACAGATCGATGGAGTATGTTAATTATCTTTCCCTTTTTATTAATTAAGAAATCACGC
TTTTTAATGAAGGTTTGATAGAACTTGGTAAAATGTATGTTTCTTACCGCAACTATTAAATTTATTTAAAGTTCAATAAG
AGTCCCTGATAATTTGCCATATGAAGAGTGAAAGCATCTCAACCATTTTTGA-TTAATGAGTAGTTTCAGAAT-------
-TCATATACCTATAACATGGATACTCAAATATGAGCACTACCTAGTGACTAAAACACATTAATGAATTTTCCCCATGAAC
TTGCATATAA---ATTGTACATAGATACATAAAAAAAA-TACTGCATAAATAAAAATAAATGATAAAAGTTAACCCATGC
TTCGTCTATAGATGTTGCATATAGATGAACAAAAGAAAACGGACACTCATAAAAAATTTCCGATCCCTAAGAGCCGAAAA
AAGCCT
>chr3D_429
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------AGAGAAAGACATATATGGACAATCTTTGCTCTCTTCA--TCTCTGTCTC
TCTCTATCTCTATCTCTACC----------TCTCAAAGATCCATTGCCAATACTAGTTTGGATATATTTTGCAATCTTAT
AAGGAAGTTAATTTTTTTGAAATACGAGAATAAAGTGACATCACTT-------------CATGCAATTTTGTATCAACAT
ACATG-TATTTTC-TTCCAACAAAAGAGAACATGCACGGGACCAATTCTTCAATAATCATACCATATATTGCACATGACT
AATGCTAGGTTTTATGAAAGCAGGTGGGGAGATCAAATTTACCAAAAGATCCTAAAAGATCTTGTTAATTATTAGAATTT
TGTATCCCGTATCACTTATATGTTGTATTAATATCAATTATTAGA------ATCCATATCTTCTTTGTAATGAGATAATT
AAATAGTACATGAGTCCATGCACGTCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAATACCCTCCACAAGC
ATCAAACGACATCCTAGCATATGCATTTC-ATTCTCTATAGCTTCTA-------CTACAAATTGTTGATCTTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTTTGCCCTTGCTAGTAGCTATGGATCCTAATGGCTGCTATCCTAACATT
TCCCC------------------------------------------------CTTGCATCAAGCATTGAGAGGCACGAC
AGCCATGCCGATATTAAAAGATTTTGTTGCCCTTGAATCCCCACCATCAGATTCACCTTCAATAGGAAATTCCTCACCAA
CCATCCATGCACCACAAGAAGCTACCGTGATGTCGGTCAATGATAGATCCATGATTCCATACCAATCACATACACACCTC
GCACCACTACCCCCACAATTGGGTGATACGATCCCTAATCCTTTATCCTT------------------------------
---------------GGACAAAAGAGAAATGTTCTCACATGAAGAATTCCTCACAAATCCTTTTTGGAATGACTTCGACT
CATCTCATCAGAGGCA-AAATTTGTCCATGGAGGATTCATTCTTCACATCGTTACTCCAAACAGAACCAAAATTAATTGT
TCATTCTCGACTTACCGCTATGGGAGAGCCGGATGATGGTTCCATCTTTAAGATGGACATCAAGCATGTCTCAGAGGTAA
ACTCACTACCACATCTTGGTTTCTTTATTATCCTGTAAACATTCA-C--------ACCAAGTACTATGCAGCAGGAACAA
AAAATACATGATGGGAGATTATTATTTGATGATTCTCATGGTGTACCTACCCCTGGTTCTCGAAGCATGCAGTCCTCACC
TATTCCAAGAGAAGATAAAATCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTGGTATTACACATGGTCCAACAACAT
CACGCAAGTACACATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCTAGGATGAAAAGCCTACAAAGTTGATCTTGCCACGCAGC--TAGATATCCCATGATTAATATTATTGGGACCAAT
ATTTCTTGTAGCCACACAATGGATGAATGCACAAAGGTTTTAGCGAGGGTGGAGAAAATTTCTAAGAGGTTATTTATTCC
TGGAAACAAAATTATCAATAGA--AGCCCAAGGGTGAAGATATATTATGTGGGTGTGAAACTATAGGAAATTAT---TT-
TCTTGACTATGTTTGTGTTGTTGTTTCCCTATGTTAACAAAAGATCCATCTTTGATGGTCGTGTACTACACCATATGTTC
CA---TATAAGGTGCAT---------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr3B_429
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGAGAAAGACATATATGGAAAATCTTTGCTCTCTCCA--TCT------C
TCTATCTATCTATCTCTATC----------TCTCACAGATCCATTAGCAATACTAGTTTGGACCTATTTTGCAATCATAT
AAGGAAGTT-ATTTTTTTGAAATACGATAATAAAGTGACATCACTT-------------CATGCAATTTTGTATCAACAT
ACATG-TTTATTC-TTCCAACAAAAGAGAACATACATGGGACCAATTCTTCAATAATCATACCATATATTGCACATGACT
AATGCTAGGTTTTATGAAAGCAGGTGGGAAGATCAAATTTACCAAAAGATCGTAAAAGATCTTGTTAATTATTAGAATTT
TTTATCCCATATCTTTTATATGTTGTATTAATACCAGTTATTAAAATCCAGATC------TTCTTGGTAATGAGATAATT
AAATAGTACATGAGTCCATGCACGCCTATAGTTTTGTAAGATCCTTATAAATATCACCTTATGTAGTAATCTCCATAAGC
ATCAAACGCCATCCTAGCATATGCATTCC-ATTCTCTATAGCTTCTA-------CTTCAAATTGTTGATCTTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
AGCCATGCCGACATTAAAAGATTTTGTAGCCCTTGAATCCCCATCATCAAATTCACCTTCAATAGAAAATTCCTCACCAA
TCATCCATGCACCACGAGAAGCTTATGTGATGTTAGTCAATGATAGATCCATGATTCCATACCAATCACATACAGACCTC
GCACCACTACCCCCACAATTGGGTGATATGATCCCTAATCCTTTATCCTT------------------------------
---------------GGACAAAAAAGAAATGTTCTCACATGAAGAATTCCTCACAAATCCTTTTTGGAATGACTTTGACT
CATCTCATCAGAGGCA-TAATATTTCCATGGAAGCTTCATCCTTTACATCGTTACTCCAAACAGAACAAAAAATAATTGT
TCATTCCCAAGTTATCGCTATGGGCGAGCCGGATGATGGTTCGATCTCTAAGATGGACATCAAGCATGTCTCAAAGGTAA
ACTCACTAC--CATCTACGTTTCTTTGTTATCCTGAAAAGATTCA-CCCCTTCACACCAAGTACTATGTAACAGGAACAG
AACATACAAGATGGGAGATTGTTATTTGATGATCCTTATGGTGTACCTACCCCTGGTTCTCCAGGCATGCGGTCCTCACC
TATTCCAAGAGAAGATAAAATCCCTCTAGTTGGTGCAAATGCTATTTCTGATAGTGGTATTACACATGGTCCTACAACAG
CACGCAAGTACAAATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCTACAAAGTTGATCCTGCCGCATAAC--TAGATAACCCATGATTAATATTATTGGGACCAAT
ATTTCTCACAGCCACACAATGGGTGAATGCACAAAGGTTTTAGCAAGGGTGGAGAAAATTTCTAAGAGGTTATTTG-TCC
TGGAAACAAAATTATCAATAGA--AGCCCAAGGCTGGAGATATGTTATGTGGGTGTGAAACTATAGGAAATTAT---TT-
TCTTGAGTATGTTTCCGTTGTTGTTTCCCTATGTAAACAAAAGAGTCATCTTTGATGGTTGTGTACTACACCCTATGTTC
CA---TATAAGGTGCAT---------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr3B_456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TCTCTCCCTCTCCCCCTCTCTC
TCGC-------------------GTGTGTGTGTCAAAGATCCATTAGCAATACTAGTTTTGACCTATTGTGCAATCATAT
----AACTTAATTTTTTTGCAAGCCGAGAATAAACTGACATCGCTTGTTTAGGAAGACACATGCAACTTTGCATCAACAT
ACATG-TTTTTTCCTTCCAATAAAAGAGAAGATGCACAGGACTCAGGCTACAATAATCATACCATATATTGTACATGATT
AATGCCTGGTTTTACGAAAACCAGTGGGGAGACCAGATTAACCAACAGATCCTAGAAGATCTCATTAATTATTAGAAATT
ATAATATCATATCTCCTATATATTGTATTAATAGCAATTGTTAAA------ATC------TTCTTGTTAATGAGATAATT
AAATAGTACATGATTCCATGCACGTCTATATTTTTGTAAGATCCTTATAAATATCACCTTCTGTAATACCCCACATAAGC
ATCAAA-GGCATCCTAGCATATGCATCTCTATTCTCCATAACATCTA-------CTGCGAATTGTTGATATTGCTAGTAG
CTATGGATCCTGATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCC------------------------------------------------CTTGCATGAAGCATTGAGAGGCACGAC
CGCCATGCCGATATTGAATGATTTCATAGACCTTGAATCCCCATCATCATATTCACCTTCAATAGGAAATTCCTCAACAA
ACATCCATGCACCACAAGAAGGTACCGTGCTGTCGGTCAATGATAGTTCCATGATTCCATACCAATCTAATGCAGAACTC
GCACCACTACCCCCATAGCTGGGTGATACAATCCCTAGTCCTTTATCATT------------------------------
---------------GGATGAAAAAGGAACGTTCTCGCATGAAGGCTTCCTCACAAATCCTTTTTGGAATGACTTCAACT
CATCACATCAGATGCA-GAATTTGTCAACGGAGGCTTCACCATTCACACCCTTACTTCAAACAGAACCAAATTCAATTGT
TCATTCCCAACTTAACACTAATGGAGTGTTGGATGATGGTTCACTCTTTAAGATGGTCACGAGGGATGTCTCCGAGGTAA
GCTCACTAC--CATCTAGGTTTCTTTGTTCTTCTCAAAAGATTCA-CCCCTTCACATCAAGTACTATGCAGAAGCAACTG
AAGATACAAGATGGAAGATTATCAAATGCTAATCCATATGGTGTAGCTGCCCCTACTTCTCCAGCCATGCAATCCTCACA
TATTCAAAGAGAAGATAAGATCCTTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTATGCATGATTCTATAACCT
CACGTAAATACACATGCAAGATTTGCAATGCCACATTCAACACATCTCAAGCATATGGTGGTCACATGAGTTCGCATAGC
AAAGCAAGGATGAAAAGCCTACAAAGTTGATCTTCCCATGTAGC--TTGACATCCCATGATTGATACTTGTGGGACCAAT
ATTTTTCCTAAGAACACAATGGATGAAGGCACGATGGTTTCATCGCAAGTGGAGAAACTTTATAAGAGGTTATTTATATT
TGGAAAAAA---TATCAATAGAATAGCATAAGAGTGAAGATATGTTATGTGGGTGCGAAACTATCAAAAATTAT---TT-
TCGTGGCTATGTTTGTGTTGCTATTTCCCTATGTAAACAACAGAGTCATCTTTGATGGTTGTGTACTACTTCCTTGGTTC
CAAAATATAAGATGCATTAATTTTTGTGCGAGTCAAACTTATGTACATTTGACCAGGATTGAAGAATAAAATATCAACAT
TTGCATTGCAAAA-TAAAATAAAATTATGAAAATAGTTTTCATGATGGACCTAATGACACAAATTTGGTATTGCAGATAT
TGGTACTTTTTTCAAAAAAATTGGTCAAACATGCACATGTTTGACTTTTGAGAAAACTAATACACCT-------------
------------TCTATTTTGAAACAGATCAATGGAGTATGTTAATTATCTTTCCCTTTTTATTAATTAAGAAATCACGC
TTTTCAATGAAGGTTTGCTAGAACTTGGTAAGATGTATGTTTCTTACCGCAACTATTAAATTTATTTAAAGTTCACTAAG
ATTCCCTGATAATTTGCCATATGAAGAGTGAAAGCATCTCAACCATTTTTTAATTAATGAGTAGTTTCAGAATTGGTGAT
ATCATATACCTATAACATGGATACTCAAATATGAGCACCACCTAGTGACTAAAACACATTAATGAATTTTCCCCATGAAC
TTGCAT---ATAAATTGTACATAG-TACACATAAAAAA-TACTGCATAAATAAAAATAAATGATAAAAGCTAACCCATGC
TTCTTCTATAGATGTTGCATATAGATGAACAAAAGAAAACGGACACTCAAAAACAATTTTCGATCCCTAAGAGCCGAAAA
AAGCCT
>chr3A_494
--------------------------------------------------------------------------------
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------------------------------------AGATCCATTAGCAATACTAGTTTGCACCTATTTTGCAATCATAT
AAGGAAGTTAATTTTTTTGAAATACGAGAATAAAGTGACATCACTT-------------CATGCAATTTTGTATCAACAT
ACATG-TTTTTTC-TCCCAACAAAAGAGAACATGCATGGGACCAATTCTTCAATAATCATACCATACATTTCACATGACT
AATGCTAGGTTTTATGAAAGCAGGTGGGGAGGTCAAATATACCAAAAGATCCTAAAAGATCTTGTTAATTATTATAATTT
TTTATCCCATATCTCCTATATGTTGTATTAATATGAATTATTAAAATCCAGATC------TTCTTGGCAATGAGATAATT
TAATAGTACATGAGTCCATGCACGTCTATACTTCTGTAAGATCCTTATAAATATCATCTTATGTAATACCCTCCATAAGC
ATTAAACGGCATCCTACCACATGCATTCC-ATTCTCTATAGCTTCTA-------CTGCAAATTTTTCATCTTGCTAGTAG
CTATGGATCCTAATGGCTCCTATCCTAACATTT-----------------------------------------------
-CCCCCTTGCCAGTAGCTATGGATCCTAGTGGCTCATATCTTAACATTTTTCCCTTGCATGAAGCATTGAGAGGCACAAC
AGCCATGTCGATATTAAAAAGTTTTGTAGCCTTCGAATCCCCATCATCAGATTCACCTTCAATAGGAAATTCCTCACCAA
CCATCCATGCACCACAAGGAGCTACTGTGATGTCAGTTAATGAAAGATCCATGGTTCCATACCAATCACATACAGACCTC
GCACCACTACCCCCATAGTTGGGTGATACAATCCCTAATCCTTTATCCTT------------------------------
---------------GGACAAAAAATAAATGTTCTCACATGAAGAATTCCTCACATATCCTTTTTGGAATGAGTTTGACT
CATCTCATCAGAGGCA-GAATTTGTCCATGGTGGCTTCATCCTTCACATCGTTACTCCAAACAGAACCAAAATTAATGGT
TCATTCCCAAATTACCGCTATGGGAGAGCCGGATGATGGTTCAATCTTTAAGATGGATGTCAAGCATGTCTCCAAGGTAA
ACTCACTAC--CATCTAGGTTTCTTTGTTATCTTGAAGACATTCACCCCCTTCACACCAAGTACTATGCAGCAGGAATGG
AACATACAAGATGGGAGATTATTATTTGATGATCCTTATGGTGTACCTACCCCTAGTTCTCCAGGCATGCGGTCCTCACC
TATTCCAAGAGAAGATAAAGTCCCTCTAGTTGGTCAAAATGGCATTTCTGAGAGTGGTATTACACGGGGTCCTACAACAT
CACGCAAGTACACATGCAAGATTTGCAGTGCCACATTCAACTCATCTCAAGCATATGGTGGTCACATGAGTTTGCATAGA
AAAGCAAGGATGAAAAGCCTACAAAGCTGATGTTGCCCCATAGC--TAGATATCCCATGATTAATATTATTGGGACCA--
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>chr2A_1022
CCTACATTTCC---------------------------------------------------------------------
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---------------------------------------------------CCCTTGCATGAAGCATTGAGAGGCACGAG
AGCCATGCCAGTGTTAAATGATATTTTGGCCTTTGAGTCACTACCATCAGATTCACCTTCCATGGCGAACTCCTCATCTG
CACCCGATGCACCACCTGAACCTACCATGATGCTAGTCAATGATAGTTCCATGATGCCACACCATGAGAATGTAGGTCTA
GCACCACTCCCACCACAATTGTCTGATACAATTATTAATCCTTTATCCATGGTTAATACCATAGTGTCCCAACCCAACAA
TGAGGAAATCCATCAAGATGAACATGAAATGTTCAGGCATGAAGACTTCCTTTCAAACCCTTTGTGGAATTACGCTGACT
CCTATCATCATACACA-TACCTCGTCCATGGAGTCTCCATCATTCACATCCTTACTCCAAACAGATCCAAATTCTATTGT
TCATACCCACCTTAACACTAATGGAGCAATGGAGGATGGTTCAATCTATGACATGCCCGCCATACATGTCTCTGAGGTAA
ACTCACTAC--CATATGGATTTCATTGTTCTCCTGAAAATATTGA-CCCATTTACACCGAATACTATATTGCAACAACAG
AACATACAAGATGGAAGGCTACTATATGATGCTTCTTATGGTGTACCTGCCCCTATTTCTCCATTCATGGCAACCTCACA
TGTACCAAGAGAATATAACACCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTTTGCATGATTCTACATCCT
TGGGTAATTACACATGCAAGATTTGCGGTCGCAAATTCAACACATCTCAAGCCTACGGTGGTCACATGAGTTCCCATGCC
AAAGAAAGGAAGAAACACCTACAAAGTTGATCTTCCCATATGTACTTGGACATCCCATGATTACCATTCTCGGGACAAAT
ATTTCTACTAGCACCAAAATGGTTGAAGACCGAGAGCTTCTAGCTCAAGTGGAGAAATTTTAATAGATTTTATTTGTTTT
TGGAAACAAAAATATCAATGGAGTAACATAAGAGTGAGAATATGTTGTGAGGGTGTGAAACAATTAATAGAACTATCTT-
TGTTTGAATGGTATGTGTTGTTGTTTCCATGTTTAACTAATAGATTCATCTTTAATGGTCGTGTAC--------------
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>SNPs
--------------------------------------S-----------------------------------------
---------------------S----------------------------------S-----------------------
------S-------------------------------------------------------------------------
----------S-----------------SSS-------------------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------S-------------------------------------------SS
--------------------------------------------------------------------------------
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-------------------------------------------------S------------------------------
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------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
---------S---S------------------------------------------------------------------
---------------------------S-------------------------------------------------S--
--------------------------------------------------------------------------------
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------------------------S----------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-----------S------S------------------S-------------S-S--------------------------
-------------------S--------------------S--------S-------S----------------S-----
S-----------------S-------------------------------------------------------------
-----S-----------------------S--------------------------------------------------
------------------------------------------------S-------------------------------
-----S-------------------------S--S---------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------------------S------------------
-S---------------------------------------S--------------------------------------
------
>forward_480
--------------------------------------------------------------------------------
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------------------------------------------------------------TCTCTCTCTCTCCCTCCCCA
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>reverse_2042
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-----------------------------------------TGCTTGACATCCCATGCTTG-------------------
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------
