>input_sequence_67339
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--------ACGCACAAACAGACACAACCTGAGGCCAGAGCCTTACTGCTTTTCGCCGAGGAAAAGTTAGTCGTCAGCAAA
TCAAGAAGAGAGCCAGCCGCACGAGGAGATAGATAGATAGATAGATAAACTGATCAAGTGAAGTGCGCCGGCACACAACA
CCTGCTCTGCTCGATCAAGCAAGGCTCATGGCCATGGGCAACAATGGCGTCAAGATCACCTACATCGAGACGCAGTTCGT
CACCTCCGACGCCGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCC---GCCGAAGCCGCCGCCACGCGCC
CGCTCCACCGGCCGCGCCCCTGCCGCGCCCCCGCAGCCGAGAGGGCGAGCGCTGTCACTGGAGCACCGAGCTATTTCACG
TCCACCACTGCGGTCTCGGTTGTTAGTGCAGCTGCGGACGACGTGCGGACAGCGGCGTTCGCTGCCAACGACGGCGATTA
CCCGGAGCTGGAGGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATC
TCCTCTATTGAAGTGTAAATGTTTTTT-TA----GGATATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTGGTTACGA
GGCAGATTCAAGTCATTTTTTGATGTTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATG
TACAAAATGTTGAAGTAAACAACGGGAGCATTTGCTTTGCAAGTA---CTCTGAAACTGGTCTAGTTTTAAT-TTAATGA
GATTCCCACATACAGCAAACCACCTGCAT---------------------------------------------------
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------------------------------------ACATGACAAAGTACAAACAAAAGTGTGTCATTTTG---------
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>chr4A_1_TraesCS4A01G009300
AAAGATAGGGTGTCTGTTTTACGGTCGGCGTTGGAATGCCCTTATACACCGGCTAGCAGAGTGTGCGGGTGTGCGTTTAT
AGCGGTGAGTGTATGCGTGTATATTTGAGCGCTTGCGTATGTATTAAGTAAAAAAAACACG-----GGTGCATCAAAAAT
TTGACTTCTAACGCTTACAAATGTCCTCCGAAGGAGGCCATTCGCGCCTCATGCTCTTTTCGCTTCCTCTTCTCGTCATC
GGACGACTGCATCCTCTGTTCGTACCTCTGCCGGCGTAGGTCGTGCATGACGGGGTCGCCGGC----AAGTTGTGGTGCC
TTTGTGCCCCCCTGCCCGGCCGGCCGAGACGTGCAACGGCCACCCGTGCCCTTCGCCGCCGGAG-------GCGTGCTGA
ACGGGCTGATCCACGTGGTGCTGGGGC--------AGGCGCCTCCCAAGGAGCCGTTCTGCTCCCTCATCCTCGTGCTCG
TCGACCTGGACGCCGCCGCCTTCATCTTCCTCGCCATCAGTGCCCACGTCCTCGGCGTCAACCTCTACGTCGACGTCGAC
CTCACGCTGCTGCCGAGCTGCTGCGGCCGCAAGGCGCCCAA--------GGGCTCCTGATGCGCCTGATCGATCGACGGA
CCAAAGACAGGGGGAAAGAACGGCGAACAGGCGGGGCGAACGAGCACGAGCTTGGCGATGTTGAGACCCATCGGCATCAT
GCATCGAAGGCAGGGAGAAAGAACGGCGAAGCAAATGTAACGAGAGCCGTCAAAACCATACTCCCCGCACGAGCGCTTGA
CCAG---CTCTCCCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCGCACTGCCTCCTCAGGACCAGTCAAACGCCTACTCT
CTCTC----------TGCATTCAGCCGCTACCACCCGCTCTTCTCAACTCTCTAGCACCACACGATCGAGCCCGGTCCAT
CTTGCACCCCAACCTGCGAATAGTTCTCACCTCCAGAATCTCAGTCTCGTCCT---GTATATAAAGGCCTCCATAACGCT
AGCAAAAGACGCACAAACAGACACAACCTGAGGCCAGAGCCTTACTGCTTTTCGCCGAGGAAAAGTTAGTCGTCAGCAAA
TCAAGAAGAGAGCCAGCCGCACGAGGAGATAGATAGATAGATAGATAAACTGATCAAGTGAAGTGCGCCGGCACACAACA
CCTGCTCTGCTCGATCAAGCAAGGCTCATGGCCATGGGCAACAATGGCGTCAAGATCACCTACATCGAGACGCAGTTCGT
CACCTCCGACGCCGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCC---GCCGAAGCCGCCGCCACGCGCC
CGCTCCACCGGCCGCGCCCCTGCCGCGCCCCCGCAGCCGAGAGGGCGAGCGCTGTCACTGGAGCACCGAGCTATTTCACG
TCCACCACTGCGGTCTCGGTTGTTAGTGCAGCTGCGGACGACGTGCGGACAGCGGCGTTCGCTGCCAACGACGGCGATTA
CCCGGAGCTGGAGGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATC
TCCTCTATTGAAGTGTAAATGTTTTTT-TA----GGATATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTGGTTACGA
GGCAGATTCAAGTCATTTTTTGATGTTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATG
TACAAAATGTTGAAGTAAACAACGGGAGCATTTGCTTTGCAAGTA---CTCTGAAACTGGTCTAGTTTTAAT-TTAATGA
GATTCCCACATACAGCAAACCACCTGCAT---------------------------------------------------
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------------------------------------ACATGACAAAGTACAAACAAAAGTGTGTCATTTTGTCGAAATTT
TCTAGTACATAAATCAGTAACATTTTGCTCAAGCTTTTTTTTCGAGAGTATGCCTAAGGCGTACTACAGCTTTATATAAG
GCAGATTTTTTAGTACAGAAACACTAACACTCGATGCGAACAACAAGCGTAGCATAACAGCGCACCTGGTTCGAAGACAG
CCAACAACGACCAAAACAACAACTACAGAGCAAAAGAGTTTGCCCTAACTGAACACAACATCGTGTCTCGACCAACGCCG
GACACCTCCGAAGACCATCGACTCCGACAGTTCTTCGCTCGTCGAGGCACCATCCACCCTGAATGTATGAGAGGAGGTGG
CAAGTTGATGGCAGGACTTGATATGATAAGCAGGCAAACAGCACCATCATCTCAAGCCTCTCATAAGAATCTGATATTAC
AAGTTTTGCCCAAGAACAACCAAGAAATGTGACAAAGCAAGAAAAAAAATGAAATGCCAGGGCAGTACCCCTTGGCATTA
GAAATTTTTCTAAGACTAAAAGCAATATGTCTTGCATATTATTCTTGGGATGGTGCGTTGTGAACTGCTCTCCGGTGATA
CTTTGGGATCCCAGCTAGAAAGAACAATTGGCGCAGAGTTATACAGAGCTGGTATAAATTTTGAGTGGGCATGCACGTAA
ATCGCCTGACTTTTATATTTTCCAAATACTTAAACGCGCAACTGCGCTATCTGGCGGAGCCGAGCGCACACGCAAGCTAT
CCGATGCTTGAGCACCTGCTACACGACAAGACTGCTAAGAAAACAACTTTCTCCTCCTCGTGATGTACCTGACGTTGTTA
GGTGGTGGATGGTCACTAAGGATTACCTGCATGCATATGTTGATGTCATCCCACATTATTTCGTCTCATTTTTTAAAAAA
GCTATAACTTTTGAACTGAGTGTCAAAATGAAAATCCGTTTTCACCATTAGGTTTTTCGTGACGAGATTTTCAAAACTAG
ATCCCATATGTATATGTTTTGATGAACTTTT
>chr4D_1
AAAAATACGGTGTCTGTTTTACGGTCCGCGTTGGAATGCCCTTATACACCGGCTAGCAGAGTGTGTGCGCA--CGTTCAT
AGGGATGAGTGTATGTATGTATGTTTGAGCGTCTACGTCTTTACTGTGTTAAAAAAAGCAACCAGTGGTGCATCAAAAAT
TTGAGTTCTAACGCTTACAAATCTCCTCCGAAGGAGGCCACTCGCGCCTCATGCTCTTTTCGCTTCCTCTGCTCGTCATC
GTACGTCTGCATCCTCTGTTCGTACCTCTGCCGGCGTAGGTCGCGCATGACGGGGTCGCTGGC----AAGTTGTGGTGGT
TTTGTGCCCCCCTGCCCGGCCGGCCGAGACGTGCAACGGCCACCCGCGCCCTTCGCCGGCGGAGGCGTGCAGCGTGCTGA
ACGGGCTGATCCACGTGGTGCTGGGGCTGTGGGGCAGGCGCCTCCCAAGGAGCCGTGCTGCTCCCTCATCTTCGGCCTCG
TCGACCTCAACGCCGCCGCCTGCATCTTCCTGGCCATCAGCGCCAACGTCCTCGGCGTCAACCTC---------------
---ACGCTGCTGCCGTGCTGCTGCGGCTGCAAGGCGCCCAA--------GGGCTCCCGATGCGTCTGATCGATTGACGGA
TCAAAGACAGGGAGAAAGTACGGCGAACAAGCGGGGAGAAGGAGCACGAGCTTGGCGATGTTGAGACCCATCAGCATCAT
GCATCGAAGGCAGGGAGAAAGAACGGCGAAGCAAATGTAACGAGAGGCGTCAAAACCATACT-CCCGCACGAGCGCTTGA
CCAACTCCTCTCCCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCACACTGCCTCCTCAGGACCAGTCAAACGCCTACTCT
CTCTCTCTCTCTCTCTGCATTCAGCCGCTACCACCCGCTCTTCTCAACTCTTTAGCGCCACACGATCGAGCCCGGTCCAT
CTTGCACCCCAACCTGAGAATAGTTCTCACCTCCAGAATCTCAGTCTCGTCCTCCTGTATATAAAGGCCTCCAGAACGCT
AGCAAAAGACGCACACACAGACACAACCTGAGGCTAGAGCTT-ACTGCTTTCCCGCGAGGAAA----AGTCGTCAGTCGA
TCAAGAAGAGAGCCAGCCGCACGAGGAGATAC------------------------AGTGAAGTGCGCCGGCACACAGCA
CCTGCTCTGCTCGATCAAGCAAGGTTCATGGCCATGGGCAACAATGGCGTCAAGGTCACCTACATCGAGACGCAGTTCGT
CACCTCCGACGCCGCGAGCTTCAAGTCCCTCGTACAGCGCCTCACGGGCAAGTCCGGCGCCGAAGCCGC-----------
---------GGCCGCGCCCCTGCCGCGCTGCCGCAGCCGAGAAGACGAGCGCTGTTACTGGAGCGCCGAGCTATTTCACG
TCCACCACCGCGGGCTCGGTC---AGTGCAGCTGCGGACCACGTGCCGGCAGCGGCGTTCGCTGCCAACCCCGGCGATTA
CTCGGAGCTGGAGGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGACAGTTACAGTGATC
TCCTCTATTGAAGTGTAAATGTTTTTTTTTGTGTGGATATTGAAGTGTAAATATTTCTGGTTTTGACTCT--AGTAACGA
GGTAAATTCCAGTCATTTTTGATCGTT-----------------------------------------------------
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>chr4B_9
--------GGTGTCTGTTTTACGGTCGGCGCTGGAATGCCCTTATACACCGGCTAGCAGAGTGTGCATGTGTGTGTTTAT
AGCGG-GAGTGTATGCGTGTACGTTTGAGCGCTTGTGTATGTACTATGTTAAAAAAAACGCTGAC----GCATCAAAAAT
TTGACTTCTAACGCTTACAAATCTCCTCCGAAGGAGGCCACTCGCGCCTCATGCTCTTTTCGTTTCCTCTGCTCGTCATC
AGACGTCTGCATCCTCTGTTCGTACCTCTGCCGGCGTAGGTCGCGCATGACGGGGTCGCCGGCAGGCAAGTTGTGGTGCT
TTTGTGCCCCCCTGCCCGGCCGGCCGAGACGTGCAATGGCCACCCGTGCCCTTGGACGGCGGAGGCG-------TGCTGA
ACGGGCTGATCCACGTGGTGCTGGGGCTGTGGGGCAGGCG----CCAAGGAGCCGTGCTGCTCCCTCATCTTCGGGCTCG
TCGACCTGGACGCCGCCGCCTGCTTCTTCCGCGCCATCAATGCCAACGTCCTCGGCGTCGACCTCTACGTCGACGTCGAC
CTCACGCTGCTGCCGAACCACTGCGGCTGCAAGGTGCCCAACAGCCCAAGGGCTCCCGATGCGCCTGATCGATTGAAGGA
TCAAAGACATGGAGAAAGAACGGCGAACAGGCGGGGAGAAGGAGCACGAGCTTGGCGATGTTGAGACCCATCGGCATCAT
GCATCAAAGGCAGGGAGAAAGAACGGCGAAGGAAATGTAGCGAGAGCCGTCAAAACCATACT-CCCGCACGAGCGCTTGA
CCAGCTCC---CCCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCGCACTGCCTCCTCAGGACCAGTCAAACGCCTCTCTG
T------------------TTCAGCCGCTACCACCCGCTCTTCTCAGCTCCTTAGCACCACACGATCGAGCCCGGTCCAT
CTTGCACCCCAACCTGCGAATAGTTCTCACCTCCACAATCTCAGTCTCG---TCCTGTATATAAAGGCCTCCAGAACGCT
AGCAGAAGA--CACACACAGACACAACCTGAGGCTAGAGCTTTACTGCTTTCCCGCGAGGAAA----AGTCGTCAGCAGA
TCAAGAACAGGGCCAGCCACACGAGGAGATA--------GATAGATAAACTGATCAGGTGAATTGCGCCGGCAGACAACA
CCTGCTC-----GACCAAGCAAGGTTCATGGCCATGGGCAACAATGGCGTCAAGGTCACCTACATCGAGACGCAGTTCGT
CACCTCCGACGCCGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCCGGCGCCGAAGCCGCCGACGCGCGCC
TGCCCCACCGGCCGCGCCCCTGCCGCGCCGCCGCAGCCGAGAGGACCAGCGGTGTTACTGGAGCGCCGACCTATTTCATG
TCCACCACTGCGGGCTCGGCTGTTAGTGCAGCTGCGGAGGACGTGCAGATAGAGAAATTCGCTGCCAACGCCGGCGATTA
CTCGGAGCTGGAGGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATC
TCCTCTATTGAAGTGTAAATGTTCTTTTTA----GGATATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTAGTTACGA
GGCAAATTCAAGTCATTTTTTGATGCTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATG
TACAAAATGTTGAAGTAAACAACGGGAGCATTTACTTTG-----------------------------------------
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>chr4B_1580
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-----------------------------------GAGATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTGGTTACGA
GGCAAATTCAAGTCATTTTTTGATGCTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATG
TACAAAATGTTGAAGTAAACAACGGGAGCATTTACTTTGCAAGTACTACTTTGAAATTGGTTTAGTTTTAATTTTAATGA
GATTCCCACATAAAACAAACACCTCCATACATGACAAAGTACAACCCCTCGCGTCGCCTCCCCCTAGGCGACGCCAGGGG
CCCCCAAACCCTAGCGCTGCATGCCTCCTCTTGCGCCTCCCTCTGCCGCCGCTGCCGCCGGCAAGGGCCGCGGTGGCGGC
GGGCCCGGTGCCGAAGGCACCTGGGCGGGTGGATGCGGCGAGATCTTATCTGAGGCGGCAGGGGCGACCCGTCTTGTGGG
ATCCGAAGGCGGCGGTTGGGGCGGCGGTCCCTTGTCATGCGGTGGTGGCCGAAGCGCCATAAGCCGGCGGAGCGGCGGCC
CTGAGATGGACGGCGGCGGTGGCAGCGCCCCATCCAACGGGGGGCCTGATCTGTGTGGAGATGGTGGCGGCGGCGACTGC
GGATCCAACGCTCGAATTGGATCCGTCGCGGGTGGCCTTCCGCCGACTGGCGGCGCGTGGAGGGACCGGTGAGGAGAGGT
CGGATCTCCGCCGGTTTACTGACGGCGGCGTTCGTCTTCGTGGCGAGACTCCGCTCGGTTCCAGCCACCCGCGAGATCGG
GACGATGTGGCTTCCGGTGAAAATCACACCTGACTGCGGTCATGGCAGACGATGGCGGCGTCTCGGACGACGTTCCCTTC
TCGAGACATAGTCGTTGCAGATCACGTCAACCTGATCAGAAGGTTCCAGGGGAAACCCTAGATCTGTGTCTACCGGATCG
GACGATGGCGACATTTCGATGTCGTTCTCCCTCCTGGGGGCATCGTTTTGGAGCAAGTGTTGACTGGAGGGGACAAGAGG
AGGAGTGGCGTGGTATCTGATACGTCGACAACGGCGGGTCTCAGCAGCATGGAGCAGCGGGGTCTCGCCGGTGGGCGTGT
GATGATGGACGAGCGCAGGATGGTGGAGTTGTCTGGCGTCATGGTGGCGTCGACGGCAGCTAGACCGGGCAAGGTACATG
CAGCAGTACAACACTGAAGATGGATTGGTGGCAGGTGGCTGTGGCGGCCTCATACCCGGCAGGCGTCCTGATTGAGGAGT
GCGCCGGACTGGTGGGTGACCCATACCCGGCAGGCGTTCTGGTTGGGACCTCAGGTCTTAGATGTTAGGTTTGGCTGCGA
GGTTTGTTTGGTATTAGGGGCCCAGACTATCAGCATCCCTTTATCAACTGGATAGGAGTTGCGACAGTTGTTGCCTAGAC
GATGGCTTTAGTCCTACTTTTGTATGACTTTCTAAGTCTTACATGAATAATTAATAAAGTGGTTGCATGCATCGTCCAGA
TGCAGAGGCCGGGGGTCCTCCTCCATTTCTGAAAAAACATGACAAAGTACAAACAAAAGTGTGTCATTTTGTCGAAAATT
TCTAGTACATAAATCAGTAACATTCTGCTCAAGTGTTTTTT---AGAGTATGCCTAAGACATACTGTAGCTTCATATAAG
GCAGATTTTTTAGTACAGAAACACTAACACTCGACGCGAACAACGAACATAGCACAACA---CACCTGGTTCGAAGACAG
CCAACAACGACCAAAACAACAACTACAAAGCAAAAGAGTTTGCCCTAACTGAACACAACATCGCGTCTCGACCAACGCCG
GACACCTCCGAAGACCATCAACTCCGACAGTACTTCGCTCGTCGAGGCACCATCCACCCTGAATGTCTGAGAGGAGGTGG
CAAGTTGATGGCAGGACTTGAGCTGATAAGCAGGCAAACAGCACCATCATCTCAAGCATCTCATGAGAATTTGATATTAC
AAGTTTTGCCAAAGAACAACCAAGAAATGTGACAAAGCAGGAAAAAAAATGAAATGCCAGGGCAGCACCCCTTGGCATTA
GAATTTTTTCTAAGACTAAAAGCAATATATATTGCATATTATTCTTGGGATGGTGTGTTGTGAACTGCTCTCCGGTGATA
CTTTGGGATCCCAGCTAGAAAGAACAATTGGCGTAGAGTTATACAGAGCTGGTATAAATTTTGAGTGGGCATGCACGTAA
ATCGCCTGACTTCTAAATTT------------------------------------------------------------
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>SNPs
---S---S-----------------------------------------------------------S------------
----------------------S--------------------S--S--S-------SSSS-------------------
----------------------S-----------------S-----------------------------S---------
-----S-------------------------------------S-----------------------------------S
----------------------------------------------------------S---------------------
--------------------------------------------------------S-------------S---S-----
---------------------S----------------------S-----------------------------------
---------------------------S----------------------------S----------------S------
S-----------S-----------------------S---S---------------------------------------
--------------------------------------------------------------S-----------------
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---------------------------------------------------S----------------------------
-------------------------------------------------------------------------S------
---------------S------------------S-----S----------S-SS--------SSSS-----------S-
-------------------------------SSSSSSSS-----------------------------------------
------------------------S-----------------------------S-------------------------
-----------------------------------------------------------------------S-S------
S--S-------------------------S--------------S----------S--------S---------------
-------------S--------------------------------S-----------------------S---------
-S------------------------------------------------------------------------------
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----S---------------------------------------------------------------------------
---------------------------------S----------------S-----S----S------------------
------------S-S-----SS-SSSSSS---------------------------------------------------
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-----------------------------------------------------------------------------S--
------------------------S--------SS------SSS--------------S-S----SS-----S-------
----------------------------------S---------S-S-S-----S----SSS------------------
---------------------------S-----------------------------------S----------------
-------------------S-----------S----------------------------------S-------------
---------------------SS----------------------------------S------S-----S---------
----------S----------------------------S-------------------------S--------------
---S------------------------S-S------------------------S------------------------
---------------------------------S----------------------------------------------
------------S--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_475
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-------------------------------------------------------TTCTGCTCCCTCATCCTCGT-----
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>reverse_3460
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-------------------GACTCCGACAGTTCTTCGCT-----------------------------------------
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-------------------------------
