>input_sequence_67323
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--ATGGATCGCGGGAGGAGCGCGGGGCCCGGCGCCGTCGGTAGCTCTGGCAGCCTCGGCCTCCGGATCGGCCAGGCCGCC
TGCTCGTCGGCGGCCCTCATGTTCATGTCCGTTGGCGTCGAGTTCTTCAGCTACACCGCCTTCTGGTATGTACTCCATGC
------------------------------------------------------------------------CC------
----CTCTCTGATCTTCGGTTTATGATTCAGCCTTCAGGGGTGCAGTGATCAGCAAGTTTGGGGAAGTGTAAAACGAAAC
ATTTGAAAATGAATTACATGCAT-------AGTA---------CTATCTTTCTTTCTCCTAAGACATGGAAATATAGACC
TCTCGTTGATCTTCTTAGATCCTAAAAACATGAAAAATATGTTACAAAAAACATGAAACTATGCTAAAGTCTGTCGTTTG
TTCTGAACTCGGCGCAAAACATGGCAGCTTCCTGGTTACGATCATGGGCCTGCTGGTCCCCTGGAGCTGCACGCTCGCCA
TGATCGACATGTACTCCATCCTCGTCGGGTGCCCGCTCCACGTGCCCGGTGTCATGGCCATCGTCGTCGTCGGAGACTGG
GTATGTACCACACCACGTAGCTAGCATCTCCCCCTCGTGCCAATACTCGGCACTTCAACCTTACTAGTGCTATAAGAAGC
ATGCTGAACATATATAGAATAAATTTG--CAGGTGCTGTCGATACTGTCGCTGGCCGCCGCGAGCTCGAGCGCCGCCGTC
ATCGACGTCCTCCTCGAGTTCCACGGGTCCCACTGCGCCCCGAGGCTGTGCGAGAGGTACCAGCTCTCCGCCATGATGGC
GTTCCTGTCCTGGCTCCTCACGGCCGCGTCCTCCCTCTTCAACCTCTGGTACATCGCCTCCAGGTGA-------------
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--
>chr5D_1_TraesCS5D01G413900
GGGCCGGAAATGGGTCGACAGGCGAACGAAAAGCGGGCGCGCGTCCGTTTAGGTCGATGCGTTGGGCCGACTTTTTTGTT
GACCGCGACCCAAACGGACGCGCGTGAACGAAATGAGTCGGCATATTGGAGTTGCTCTAACTAAACATGAGAGCAAATAA
AAAACGTAGGGAGTTCCTGTCTTATTTTCCTCGTCC-GTCGCGATGCAACCGCAGCCATACAATGCGCGCAAAGCACATC
ATTCTTCCCCTCAAGGCTGTCATCCTATCCTCTGT-CCTTTTTCTTGCAGATATTGTCGGATTCCATTGCCAGAGATTAT
TCTCC--TCTCAACACAACTTGATCGAACAGTGACCG----ATCGTCCAGACCACTGGCACTGTGCCATGCGGCATCCAC
CGGAAGACACGAGACCCACCGCGCACCCGTCATCGCCCCTTGTTACG-------ACCAGTCATACTCATATCGCCGACCC
CGATCTCGCACCTT-CCGCGTCTACGTGCGCGCCCGGGGCCGCCACGTCTCCCC---------------GGACGTCGTGA
TCGGCGGCCAGAGCGTGCACAGACGTGTGGTTTACCGACGCTGTTTTCACCAATAGTCTACGCAGTGTTGTGTAAACGTG
TGTGATCCAGGTGGAGACGGCGACGGGAGAGAGATCGAGACCGGGAAGCGGCAGCCATGGCGATCAAAAGGCTCTCGAGA
AAGGCGGAGAATCTAGAGGAAGAGGAATCAGTCTGCTCCCCTCCCACG-------CCAGTGCCCCCCGTCCGTCCACCCA
AAGCCCTGAGCTTTTCATCCTGTCCCCCTGCCTTTTGTTCCCCCCCTCGCGCACTCGCACTCGCACTCGCATCATCATTC
CCTCCATATATCTCCACTGCGTCGTCGCACGATCGAGCCGGAGACAGCAGAGCGCGCGCGTCCGAGGCCGACAGGTGTGC
GGGACGAGGAAGGCGGCGGCTGCGTGTGTTG----GGCGCGCATGGGATGAGACGGCGGTGTGAGCGCGTCGCCTCCAGT
GGATGGATCGCGGGAGGAGCGCGGGGCCCGGCGCCGTCGGTAGCTCTGGCAGCCTCGGCCTCCGGATCGGCCAGGCCGCC
TGCTCGTCGGCGGCCCTCATGTTCATGTCCGTTGGCGTCGAGTTCTTCAGCTACACCGCCTTCTGGTATGTACTCCATGC
------------------------------------------------------------------------CC------
----CTCTCTGATCTTCGGTTTATGATTCAGCCTTCAGGGGTGCAGTGATCAGCAAGTTTGGGGAAGTGTAAAACGAAAC
ATTTGAAAATGAATTACATGCAT-------AGTA---------CTATCTTTCTTTCTCCTAAGACATGGAAATATAGACC
TCTCGTTGATCTTCTTAGATCCTAAAAACATGAAAAATATGTTACAAAAAACATGAAACTATGCTAAAGTCTGTCGTTTG
TTCTGAACTCGGCGCAAAACATGGCAGCTTCCTGGTTACGATCATGGGCCTGCTGGTCCCCTGGAGCTGCACGCTCGCCA
TGATCGACATGTACTCCATCCTCGTCGGGTGCCCGCTCCACGTGCCCGGTGTCATGGCCATCGTCGTCGTCGGAGACTGG
GTATGTACCACACCACGTAGCTAGCATCTCCCCCTCGTGCCAATACTCGGCACTTCAACCTTACTAGTGCTATAAGAAGC
ATGCTGAACATATATAGAATAAATTTG--CAGGTGCTGTCGATACTGTCGCTGGCCGCCGCGAGCTCGAGCGCCGCCGTC
ATCGACGTCCTCCTCGAGTTCCACGGGTCCCACTGCGCCCCGAGGCTGTGCGAGAGGTACCAGCTCTCCGCCATGATGGC
GTTCCTGTCCTGGCTCCTCACGGCCGCGTCCTCCCTCTTCAACCTCTGGTACATCGCCTCCAGGTGAGGTG---------
-AGGTGGTCGCCGA---GGACGCCAGACTCTGACTCGCTGCAGCATCTCTAAATTCCGTGGTCTGTATAGCTGGAAGGAA
GGTTTTGTATGTGTATAGCT-------GGAAGGTTTTGTACTCAGATTTCATAAACCTGC----CCTCTGACTAATTAGC
CATTCTGGGCATGATGGATGCCCAACTGGTAAAGATTGTTTCAAGTTGACACTCCACTTTCCACACGATCAGCTCTTTGC
ATAACAGGGTACTATTATAGTATTTGTTTTGGTTTCTGGTCAGTACAACATTTATAGAGATCAGTATCTCGAGAGTTTCT
GCAGAAATACAAGAGGCTGCTGAAGATGGAACAACCA---TATGTAGGTAGTAGGCTGATGGATGTTATTTTTTTTGTAG
CACAATATTTTTCATTTTCTGAGGG-AATGGTGATCATCTGTTGGTGAGGATTTATCGGTGCAAAGTAGACATTCCGGCG
TGTGCAATGGTGCTATCGTAGCGGTGTCACGTCGGACAAATGTAGAGGTGTAGGAAAGAGAAACAAAAGAAAAGGCTTTG
CCTTCGCTTAATTAAGAGATGATCTCTTAACAACAAATGTCTCACCACATTTTTATGAACTAGAGATAAGATTAAGAGAC
CACCCATTGTACATCATTTTCTTTGTCATTTCTACATTACGATGGCACGATTAAGATAAGATTGTCTTATAACC------
-----------------TCAATCCTCACCTCACCGAGCTCATCTTCCACCACCTACCCATGGATAACTTTGCGTCAAGTT
GATAATTAGTTCCGCAATTTTATT--TTTAATAAAAATGTATTTGATTAACAATTTTTT-AAGAATGTGTTGCATGAATA
TATAAATCATT-TATTTTGCATATTTGAAAAAAGGTACTTCATAAAAATGAAAAATATATTATGGAAAAGAAAAAAACAA
GTTCATGAGTATAAATGTTTGTTCGCATATTTGAGAAATATTCATAATGTATTTGTGAAATATATACCAGATTCTGTCAA
AA
>chr5B_174
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-------------TTCCTGTCTTTTTTTCCTCGTCC-GTCGCGATGCAACCGCAGCCATACAATGCGGGCAAAGCACATC
ATTCTTCCTCTCAAGGCTGTCATCCCATCCTCTGT-CCTTTTTCTTCCAGATATTGTCGGATTCCATTGC-AGAGATTAT
TCTCCACTCTCAT--CAACTTGCTCGAACAGTGACCG----ATCATTCAGACCACTGGCACTGTGCCATGCGGCATCCAC
CTGAAGACACGAGAGCCACC--GCACCCGTCACCGCCCCTTGTTACGACCGTCGACCAGTCATACTCATATCGCCGACCC
CGATCTCGCACCTT-C-GCGTCTACGTGCGTGCCCGGCGCCGCCACGTCTCCCCACGTCTACATTGCAGGGACGTCGTGA
TCGGCGGCC------------------------------------------AATACTCTACGCAGTGTCGTGTACACGAG
TGTGATCCAGGTGGAGACGGCGACGGGAGAGAGATCGAGACCGGGAGGCGGCAGCCATGGCGATCAAAAGGCTCTCGAGA
AAAGCGGAGAATCTAGAGGAAGAGGAATCAATCTGCTCCCCTCCCACG-------CCGGTGCCCCCCGTCCGTCCACCCA
AAGCCCTGAGCTTTTCATCCTGTCCCCCCTGCCTTTTGTCCCCCCCTCGCGCACTCGCACTCGCACTCGCATCATCATTC
CCTCCATATATCTCCTCTGCGTCGTCGCAGGATCGAGCCGGAGATAGCAGAGCGCGCGCGTGCGAGGCCGACAGGTGTGC
GGGACGAGGACGGCGGCGGCTGCGAGTTTTG----GGCGCGCATGGGATGAGACGGCGGTGTGAGCGCGTTGCTTCCAGT
GAATGGATCGCGGGGGGAGCGCGGGACCCGGCGCCGTCGGTAGCGCCGGCAGCCTCGGCCTCCGGATCGGGCAGGCCGCC
TGCTCGTCGGCGGCGCTCATGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTACACTGCCTTCTGGTATGTACTCCATGC
------------------------------------------------------------------------CTCTCTCT
CTCTCTCTCTGATCTTCGGTTTATGCTTCAGCCTTCATGGGTGCAGTGATCAGCAAGTTTGGAGAAGTGTAAAACGAAAC
ATTTGAAAATGAATTACATGCGT-------AGTACGTACTATGCTATCTTTCTTTCTCCGAAGACATGGAAATATAGACC
TCTCGTGGATCTCCTTAGATCCTAAAAACATGGAAAATATGGTATAAAAAACATGAAAATATGTTGAAGACTATCATTTG
TTCTAAACTCCGTGCAAAACATGGCAGCTTCCTGGTTACGATCATGGGCCTGCTGGTCCCGTGGAGCTGCACGCTCGCCA
TGATCGACATGTACTCCATACTCGTCGGGTGCCCGCTCCACGTGCCCGGTGTCATGGCCATCGTCGTCGTCGGAGACTGG
GTATGTACCACACCACGTAGCCAGCATCTCCCCCTCGTGTCAATACCCGATTCTTCAACCTTACTAGTGCTATAAGAAGC
ATGCT-AACATATACAGAATAAATTTG--CAGGTGCTGTCGATACTGTCGCTGGCGGCCGCGAGCTCGAGCGCCGCCGTC
ATCGACGTCCTCCTGGAGTTCCACGGATCCCACTGCGCCCCGAGGCTGTGCGAGAGGTACCAGCTCTCTGCCATGATGGC
GTTCCTGTCCTGGCTCCTCACGGCCGCGTCCTCCCTCTTCAACCTGTGGTACATCGCCTCCAGGTGAGGGT---------
-GGGTGGTCGCCGATGAGGTCGCCAGACTCTGACCCGCTGAAGCATCTCTGAATTC--TACTCTGTATATCTGGAAGGAA
GGTTTTGTATGTGTATAGTAGCTGGAAGGAAGGTTTTGTATTCAGATTTCATAAACCTGC----CA-CTGACTAATTAGC
CATTCTGGGCATGATGGATGCCGAACTGGTAAATATTGTTTGAAGTTAACATTCCACTTTCCACACGATCAGCTCTTTGC
ATAATAGGGTAGTATTATAT--TTTGTTTTCGTTTCTGGTCAGTACTACATTTATAGAGATCAGTATCTCGAGAGTTTCT
GCAGAAATACAAGAGGCTGCTGAAGACGGAA----CA---TACGTAGGTAGTAGGCTGATGGATGTTATG-TTTTTGTAG
CGCAATCTTTTTCATTTTCTGAGGG-AATGGCGACCATTTGTTGGTGGAGATTTATCGGTGCAAAGTAGACATTCCAGCA
TGTACAGTGGTGCTATCTTAGCGATGTCACATCAGACAAATGTTGAGGTGTAGGAAAGAGAAGCACGCGAAAAGCCTTTG
CCTTCTCTTA-------------------AGAACAAATACCTCACCACATTTTTATGAACTAGAGATAAGATTAAGAGAA
CAACCATTGGGCATCATCTTGTTTGTTATTTCTAGATTAC-GTGGCACAATCAAGATAAGATTGTCTTATAACCCACCGT
ACATGCCATAATCCACCTCAATCCCCACCTTACCAAGCTCATCTTCCACCATCTACCCGTGGATAGCTTTGCGTCAAGCT
GACAACTAGTTCCGCAATTCTAATTGTTTAATAAAAAAGTATTTGATTAAAAAAA--TT-AAGAATGTTTTGTAAGAATA
TATAAATCATTCTATTACGCATATCTGAAAAAAGGTAATTCAGAAAAAATAAAAACATATTATGGAAAAG-AAAAAAAAA
GTTCATGAGTATAAAT-TTTGGTCACATATTTGAGAAATATTCATAATGTATTTGTGA----------------------
--
>chr5A_174
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-------------TTCCTGTCTTTTTTTTCCATGTCTGTCGCGATGCAACCGCAGCCATCCAATGCGCGCAGAGCAC---
ATTCTTCCCCTCAAGGCTGCCATCCTATCCTCTAACCCTTTTCCTTGCAGATATTGTCGGATTCCATTGC-AGAGATTAT
TCTCCACTCTCATCACAACTTGGTCGAACAGTGACCGATCGATCGTCCAGACCACTGGCACTGTGCCATGCGGCATCCAC
CTGAAGACACGAGAGCCACC--GCACCCGTCGTCGCCCCTTGTTACG-------ACCAGTCATACTCATATCGCCGACCC
CGATCTCGCACCTTCC-GCGTCTACGTGCGTGCCCGGCGCCGCCACGTCTCCCC---------------GGACGTCGTGA
TCGGCGGCCGGAGCGTGCACAGACGTGTGGTTTACCGACACTGGTTTCACCAATAGTCTAGGCAGTGTCGTGTACACGAG
TGTGATCCAGGTGGAGACGGCGACGGGAGAGAGATCGAGACCGGGAAGCGGCAGCCATGGCGATCAAAAGGCTCTTGAGA
AAGGCAGAGAATCTAGAGGAAGAGGAATCAATCTGCTCCCCTCCCACGCCAGTGCCCGGTGGCCCCCGTCCGTCCACCCA
AAGCCCTGAGCTTTTCATCCTGTCCCCCCTGCCTTTTGTTCCCCCCTCGCGCACTCGCACTCGCACTCGCATCATCATTC
CCTCCATATATCTCCGCTGCCTCGTCGCAGGATCGAGCCGGAGATAGCAGGGCGCGCGCGTGAGAGGCCGACAGGTGTGC
GGGACGAGGAAGGCGACGGCTGCGTGTGTTGGTTCGGCGCGCATGGGATGAGACGGCGGTGTGAGCGCGTCGCCTCCTGT
GGATGGATCGCGGGAGGAGCGCGGGGCCCGGCGCCGTCGGTAGCGCCGGCAGCCTGGGGCTCCGGATCGGGCAGGCTGCC
TGCTCGTCGGCGGCCCTCATGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTACACTGCCTTCTGGTATGTACTCCATGC
ATGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCCT------------------------------------------------GAGACATGGAAAACCAAAC
GCTCTTAAAGTTATATCTCTTTACGAAAGGAGTA---------CTATCTTTCTTTCTCCGTAGACATGGAAATATTGATC
TTCTTATAGATCCTA-------TAAAAACATGGAAAATATGTTATGAAAAGCATGAAAATATGCTGAAGTCTGTCGTTTG
TTCTGAACTCGGCGCAAAACATGGCAGCTTCCTCGTAACGATCATGGGCCTGCTGGTCCCCTGGAGCTGCACGCTCGCCA
TGATCGACATGTACTCCATACTCGTCGGGTGCCCGCTCCACGTGCCCGGTGTCATGGCCATCGTCGTCGTCGGAGACTGG
GTATGTACCACACCACGTAGCTAGCATCTACCCCTCGTGTCAATACCCGATTCTTCAACCTTACTAGTGCTATAAGAAGC
ATGCTGAACATATACAGAATAAATTTGCACAGGTGCTGTCGATACTGTCGCTGGCGGCCGCGAGCTCAAGCGCCGCCGTC
ATCGACGTCCTCCTGGAGTTCCACGGATCCCACTGCGCCCCGAGGCTGTGCGAGAGGTACCAGCTCTCCGCCATGATGGC
GTTCCTGTCCTGGCTCCTCACGGCCGCGTCGTCCCTCTTCAACCTCTGGTACATCGCCTCCAGGTGAGGTGAGGTGAGGG
TGGGTGGTCGCCGATGCGGACGCCAGACTCTGACTCGCCGCAGCACTTCTAAATTCCGTAGTCTGTATAGCTGGAAGGAA
GGTTTTGTATGTGTATAGCT-------GGAAGGTTTTGTACTCAAATTTCATTTCATAAACCTGCCTCTGACTAATCAGC
AT---------------------------TAAGGATTGTTTGAAGTTAACATTCCACTTTCCACACGATCTGCTCTTTGC
ATAATAGGGTTCTATTATAT--TTTGTTTTCGTTTCTGGTCAGTACAGCATTTGTAGAGATCAGTGTCTCGAGAGTTTCT
GCAGAAATACAGGAGGCTGCTGAAGACGGAA----CAACATATGTAGGTAATAGGCTGATGGATGTTATG-TTTTTGTAG
CGCATA---TTTCATTTTCTGAGGAAAATGGTGACCATTTGTTGGTGGAGATTTATCGGTGCAAAGTAGACATTCCGGCA
TGTGCAATAGTGCTATCTTAGGGGTGTCATGTCGGACAAATGTTGAGGTGTAAGAAAGAGAAACACGCGAAAAGCCTTTG
CCTTCTCTTAGTTAACAAATGATCTCTTAAGAACAAATGCCTCACCACATTTTTATGAACTAGACATAAGATTAAGAGAC
CACCCATTGTGCATCATCTTCTTTGTTATTTCTAGATTAC-ATGGCACGATCAAGATAAGATTGTCTTATAACCCACCGT
ACATGCCATAATCCACCTCAATCCCCACCTTACCAAGCTCATCGTTCACCACCTACCCATGGATAGCTTTGCGTCAAGCT
GATAACTAGTTCCACAATTATAATTGTTTAATAAAAAAGTATTTGATTAACAAAA--TTTAAGAATGTGTTGCAAGAATA
TATAAATCGTTTTATTTTGCATAT-TGAAAAAAGGTACTTCAGAAAAAATAAAAACATATTATGGAAAAGAAAAAAACAA
GTTCATGAGTATAAATGTTTGTTCACATATTCGAGAAATATTCATAATGTATTTGTGA----------------------
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------S--------------------------------------------------------
----------------------------------------------------------------------S---------
------------S---------S---------------------------------------------------------
-S------------S-----SS----------------------------------------------------------
----------------S-------------S------S------------------------------------------
---------S-----------------------------S---S------------------------S-----S---S-
--------------------------------------------------------------------------------
------------------------------S--------------------------S----------------------
----------------------------SSS-S---SS------------------------------------------
---------------S-------------S--------------S----------------S------------------
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--------------------------------------------S-S-----------------------S---------
--------------------------------S-----------------------S-----------------------
-------------------------------------------------------------------------S------
-------------------------S-----------S------------------------S-----------------
---------------------S-------------------------------------S--------------------
------------S-------------------S-----------S-------------S------S--------------
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-------------------S------------------------------------------------------------
---------------------------------------S------S--SSS----------------------------
--------------S----------------------------------------S------------------------
--------------S-----------S-----------------------------------------------------
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-S---------------------------------------------------------S--------------------
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----------------------S------------------S-----S---S----------------------------
----S--------------SSS--------S-------------------------------------------------
--------------------------S----SSSS----------------------------------SS---------
-S----S---------------------------S---S--------SS------------------------------S
-----------------S-------------------------S---------------------SSS------S-----
-----S----S----S-S------------S--------S----------------------------------------
----------S------S--------S-------S-----S----------S----------------------------
------------------------S-----S---S------------------------------S------------S-
-----S-------------S--S--------------S---------------SSSS-----------------S-----
------------------------S-----------------S-----SS-----S------------------------
------------------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSS
SS
>forward_831
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-----------TTTTCATCCTGTCCCCCTGC-------------------------------------------------
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--
>reverse_2745
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------------------------TCACCTCACCGAGCTCATCT------------------------------------
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--
