>input_sequence_67322
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-----------------------------------------------ATGGAAGCTACCGACAGCCTCCTCATGGCCACC
GAGCTCAGGCTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAG
AGGCAGGAAGCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCAC
CCCCCGTGGCCAAGTGAGTACCAGCCCAACCCCTTCAGCCTCCGGGCTCACTACCTTATTCTTCTTCCTCCAAGTCCAAG
GCCAGGGTTCTTACATGCATGCTTTCTCTCAACTCTCGCAGGGCACAAGTTGTCGGGTGGCCGCCGGTGAGGTCGTACCG
GAAGAGCTGCTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCAGACGAGGCCAGCAGCAACAACACGCCGTCCG
CAGCGGCGCCGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGTATGGACGGAGCGCCCTACCTAAGGAAGGTCGACATG
AGGATGTACAAGGGCTACCGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGC
TTCCAA---CGGCGGCGCGAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAG
ATGTGCCCTTCGAGTAAGTGTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGAT
CATTTTGTGAAGCAGTGACTTATGATCTCTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGA
TCATCAAGAGATCCGAAGCCACAGGCCTGGGATCCAAATAA---------------------------------------
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>chr5D_1_TraesCS5D01G388200
CCACCCGTTTTCTATTCTATTTCA---CTCCATTCCGGATGAAAGTCCATGATATCATCATATATCATCGCTCCATACCA
TACATGCATGATTC----ATCGGCCCAT---CCGGCCGGGTTACAGGGGTGCCGGGTTGCGATCGCCGCCCATGCCGTCC
--------CAATTCCCGATTCCCGATCGCCGCTCAGAAGCTTCCAGCCTGA--------GTGCTCAGCTACCCACACTTA
CGTAA----CGGATCGAACTGAAACCCGTTGCGTTGTGCGATGGACGG---------------GGCAGACAGCCCGTTAG
ACATGCCATGTGCCCCACGGAATACAATATCCGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAATTAGC
TAGTAGGAT-----AATCAATCAATCAGTCAGTCCAGCTCTCGATTGTTTTGTTTTGTTTAGGTATGTAGCTAAACAACT
GGGAGATACAATACTCCATCAGCATCTATCAAGCTAGTATAGTATACTATCGTACAGCCAGGCCGATCGGCACAGCCAGC
CGGCGGCGACGCACATCGGCATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTG
CGCCGCCCGCCCCGCCCGCGCCCGCGCCCGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCAGCCACCCCG
ACACCCCAGCCTAGCCACA---------------CCACACCCAGCCCCCGCCGTGCGCTGCGCTCGATCGATCGATCGAT
GCACCTACGTGT---------CCGCGTATGTCATTGTCAGCCCATGCGCGCTGGCTCTATGCCAACTTACTTACTCGCGA
TGCCCTTCG-------------CCGCCTATAAAACATGGGCGCCAACCCTACCCTTGCCAAGCCAACGCAAGCAACACAC
ACATCGTCTTCTCCTCTCACCGAGCCAGAGCTATCACATCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCG
CTAGACCAAGCAAGCACCAAGCATCTTCGCACGTACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACC
GAGCTCAGGCTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAG
AGGCAGGAAGCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCAC
CCCCCGTGGCCAAGTGAGTACCAGCCCAACCCCTTCAGCCTCCGGGCTCACTACCTTATTCTTCTTCCTCCAAGTCCAAG
GCCAGGGTTCTTACATGCATGCTTTCTCTCAACTCTCGCAGGGCACAAGTTGTCGGGTGGCCGCCGGTGAGGTCGTACCG
GAAGAGCTGCTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCAGACGAGGCCAGCAGCAACAACACGCCGTCCG
CAGCGGCGCCGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGTATGGACGGAGCGCCCTACCTAAGGAAGGTCGACATG
AGGATGTACAAGGGCTACCGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGC
TTCCAA---CGGCGGCGCGAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAG
ATGTGCCCTTCGAGTAAGTGTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGAT
CATTTTGTGAAGCAGTGACTTATGATCTCTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGA
TCATCAAGAGATCCGAAGCCACAGGCCTGGGATCCAAATAATGAAGATCTGAGAAGCAAAGATGATATCATGGGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAG
CCAAAAGGGATGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTTTT
AGAAGCACAAAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGA
TCACTTATCATCATGCATGTTTTTGCTGGGGGGCTTTCCTTCCGGTTTCCCCTTGGCA----TGTGCTTTTGTATTCAAG
TTGTCATAGTCACTTTATCATCAACGCAATTATGTTGGTTGTTGTTTGTGAGCACCACTTGTTTAT--------------
-----------------GCGTTCTCAGTTCGAGTCCAATGATGTTAAGGTGCGGTGGACAGTGGTATATGCGACGATCGA
GCATTTCGACAATGTTTTGATCTGCTGTATATGGTACAACC-------AAATTGGATGGATCTTCCACTTGTTTAGCTAA
GACTGCAAACACAGATGCAAAACATTTGGTTTCTTTTGTATCACTGCAACATTTTAGGGCATCTTT-GATCGAAGGAATT
GCAAACATATTGTGTATGATTTCAATATGCTTAGAGAAATTGATAGATTGGATAAGAAA------CCTTTTGGATATCAC
CTACAGATTGATATGTAGGACTAGAAACCTGATACGTAGATGTTACTTGTGAGCCACCTCTCATCCGATACCAAATCGAA
ATTTCCATTCGAGAGTTCATATGCTATGTAAAAAAACGCCATAGTGCCAA
>chr5B_1
CCACCCGTTTTCTATTCTATTTCA---CTCCATTCCGGATGAAAGTCCATGATATCATCATAT--CATCGCTCCATACCA
TACGTGCATGATTCGTCGATCGGCCCAT---CCGGCCGGGTTACAGGGGTGCCGGGTTGCGATCGCCGCCCATGCCGTCC
--------CAAGTCCCGAT---CGATCGCCTCTCAGAAGCTTCCAGCCTGACACGTCCAGTGCTCAGCTAGCCACACTTA
CGTAA----CGGATCGAACTGAAACCCGTTGCGTCGTGTGATGGACGGGAC-------GGGACGGCAGACAACCCGTTAG
ACATGCCATGTGCCCCACGGAATACAATATCTGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAACTAGC
TAGTAGGAT-----AATCAATCAA----TCAGTCCAGCTCTCGATTGTTTTGTTT-----AGGTATGTAGCTAAACAACT
GGGAGATACAATACTCCATCAACG----TCAAGCTAGTGTGTACC---ATCGTACAGCCAGGCCGATCGGCGCAGCCAGC
CGGCGGCGACGCA------CATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTG
CGCCGCCCGCCCCGCCCGCGCCCGCGCCCGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCAGCCACCCCG
ACACCCCAGACTAGCCACACCACACCACACCACACCACACACAGCCCCCGCCGCGTGCTGCGCTCGATCGT--------T
GCACCTACGTGT---------CCGCGTATGTCATTGTCAGCCCATGCG--CTGGCTCTATGCCAACTTACTTACTCGCGA
TGCCCTTCCTTCGC----GTCCCCGCCTATAAAACATGGGCGCCAACCCTACCCTTGCCAAGCCAACGCAAGCAACACAC
ACATCGTCTTCTCTTCTCAGCGAGCCAGAGCTATCAGACCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCT
TCCCTACC-GCAAGCACTACGCGGCATCTTCCC-ACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACC
GAGCTCAGGCTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGTGATGTCGCCGCCGGCGACTCCCAG
GGGCAAGAAGCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACGTCGAGACCGCAG
CCCCCGTGCCCAAGTGAGTACCAGCCCAACCCCTTCAGCTTCCGTGCTCACTACCTTATTCTTCTTCCTCCAACTCCAAG
GCCAGAGTTCTTACATGCATGCTTG-TCTCAACTCTCGCAGAGCACAAGTTGTCGGGTGGCCGCCGGTGAGGC-------
-----GCTGCTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGGCCAGCAGCAAAAACACGCCGTCTG
CGGCGGCGCCGGCGAGCACCAACGGCTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTGAGGAAGGTCGACATG
AGGATGTACAAGGGCTACAGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGC
TTCCAACGGCGGCGGCGCAAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAG
ACGTGCCCTTCGAGTAAGTCTTGATCCATTTGATCACTTCTTCATCTTA--------------------------AAGAT
CATTTTGTGAAGCAGTGACTTATGATCTTTGTTCTTGCGTTTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGA
TCATCAAGAGATCCGAAGCCACAGGCCTGGGATCCAAATGATGAAGATTTGAGAAGC-AAGATGATATCATGGCCTCTCT
CTCTTTTTTTCTTTTTAA--------------------------------------------------------------
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--------------------------------------GGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAG
CCAAAAGGGATGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTTTT
AGAAGCACAAAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGA
TCACTTATCATCATGCATGTTTT-GCCGGGGGGCTTTCCTTCCGGTTTCCCCTTGGT-----TGTGCTTTTGTATTCAAG
TTGTCA-AGTCACTTTATCATCAACACTATTGTGTTGGTTGTTGTTTGTGAGCACCACTTGTTATGCATTCTCAATCCGA
GTCCAAAGGATGTTTAGG-------------------------------TGCGGTGGGCAGTGATATCTGCGATGATCGA
GCATTTCGACAACGTTTCAATCTGTTGTGTACGGTACAACC-------AAATTGGATGGATCTTCCACTTGTTTAGCTAA
GACTGCAAACACAGATGGAACACATGTGATTTGTTTTGTACCACCGCAACATTTTAAGGTCTCTTT-AATCGAAGGAATT
TCAAACATATTGTGTACGATTTCTATATGCTTAGAGAACTTGATAGATTTGATAGGAAA------CCTTTTGGAT-----
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>chr5A_1
CCACCCGTTTTCTATTCTACTATTCCGCTCCATTCCGGATGAAAGTCCATGATATCATCATAT--CATCGCTCCATACCA
TACGTGCATGATTCGTCCGTCGGCCCATCCTCCGGCCAGGTTACAGGGGTGCCGGGTTACGATCGCCGCCCCCGCCGCCC
ATGCCGTTCAAGTCCCGATTCCCGATCGCCGCTCAGAAGCTTCCGGCCTGACACGTCCAGTGCTCACCTAGCCACACTTA
CGCACGTAGCGGATCGAACTGAAACCCGTTGCGTGGTGTGATGGACGGGACGGGGACGGGGACGGCAGACAACCCGTTAG
ACATGCCATGTGCCCCACGGAATACAATATCTGCCCCGAGACCCGGAAAACCGCGTACGCATCCACCCATCCGAATTAGC
TAGCTAGGATAATCAACCAATCAG----TCAGTCCAGCTCCCGATTGTTTTGTTTTGTTTAGGTATGTAGCTAAACAACT
GGGAGATACAATACTCCATCAGCATCTATCAAGCTAGT-------------GTACAGCCAGGCCGATCGGCACAGCCAGC
CGGCGGCGACGCA------CATCGGCACATGGCCTGCCGCGCCGTGTAGCCCGTGGACCGAGGGATCCCGGACGGTCGTG
CGCC------------------------CGGGCCCGCGCTGTCGCCGGCCGACCCGGCACGCTGCGCCCCGGCCATCCCG
ACACCCCAGCCTAGCCACACCACACCACACC----------CAGCCCCCGCCGCGTGCTGCGCTCGATCGT--------T
GCACCTACGTGTGCGTCCGCCCCGCGTATGTCATTATCAGCCCATGCG--CTGGCTGTGTGCCA----ACTTACTCGCGA
CGCCCTTCCTTCGCGGGAGTCCCCGCCTATAAAACATGGGCGCCAACCCTACCATTGCCAAGCCAACACAAGCAA-ACAC
ACATCGTCTTCTCCTCTCAGCGAGACAGAGCTATCAGATCTCGTCATTCACATCGCATCCAAACGTACTTGCAAAGTTCT
TCCCTAGC-GCAAGCACTGCCCGGCATCTTCCC-ACGTCCACTGGAAATGGAAGCTACCGACAGCCTCCTCATGGCCACC
GAGCTCAGGCTGGGCCTCCCCGGCACCGACGACAAGCCACACAAGATCACCTCGGCGATGTCGCCGCCGGCGACTCCCAG
GGGCAAGAAGCGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGCCGACAGGTCCGACGACACCGCGACCGCAC
CCCCCGTGGCCAAGTGAGTACCAGCCCAACCCCTTCAGCCTCCCGGCTCGCTACCTTATTCTTCTTCCTGCAACTCCAAG
GCCAGGGTTCTTACATGCATGCTTG-TCTCAACTCTCGCAGGGCACAAGTTGTCGGGTGGCCGCCGGTGAGGC-------
-----GCTGCTTCCAGGAAGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGGCCAGCAGCAACAACACGCCGTCCG
CGGCGGTGCCGACGAGCACCAACGGCTCCTTCGTCAAAGTGAGCATGGACGGAGCGCCCTACCTCAGGAAGGTCGACATG
AGGATGTACAAGGGCTACCGGGAGCTCAGGGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGGGCAGACGGCGGCGC
CTCCAGCGGCGGGGGCGCAAACCCGGCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCTTGTCGGAG
ACGTGCCCTTCGAGTAAGTCTTGATTCATTTCATCACTTCTTCATCTTCGACATATATTAGGTGACTGTGAACTGAAGAT
CATTTTGTGAAGCAGTGACTTATGATCTTTATTCCTACG-TTTTGCAGTATGTTCAGCGGCACATGCAAGAAGTTGAGGA
TCATCAAGAGATCCGAAGCCACAGGCCTGGGATCCAAATAATGAAGACTTGAGAAGC-AAGATGATATCATGGGCTCTCT
-----TTTTTTTTTTTAC--------------------------------------------------------------
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--------------------------------------GGTTTATACTTTTTGTTCTTCGATCTGGGTTCGATCACCAAG
CCAAAAGGGACGAGCTTGGTGCATCAGAGAGCACACATGGATGTGTGCCCTTTGTTTGGGTCCTTGAAGTAGGCCTTCTT
AGAAGCACAAAGGAGATGTGGAGATTTGGGTTAAACTCTCCATGTGTTTGTACAAACGAAACAGTTATATTGATTGTTGA
TTACTTATCATCATGCATGTTTTTGCTGGGGTGCTTTCCTTCCGGTTTCCCCTTGGCTTGGCTGTGCTTTTGTATTCAAG
TTGTCA-AGTCACTTTATCATCAACACTATTA-------TGTTGTTTGTGAGCACCGCTTGTTTAT--------------
-----------------G-------------------------------TGCGGTGGATAGTGATATCTATGACGATCGA
GCATTTTAACGACGTCCGGATGTGATTTCTGAGTATACCGCGCAACCAAAATTGGATGGATCTTCCACTTGTTTAGCTAA
GACTGCAAGCACA-----AACAAATGTGGTTCCTTTTGTATCACCGCAACATTTTAGGGCATCTTTGAATTAAACAAATT
TCAAAGATATTATGCACGATTTCAATCTGCTTACAGAAATTGATAGACATGATATGATGAGAAAGCCTTTTGGATGTTAC
CTACAAACTGATATGTAGGATTAGAAACCCGAC----AGATGCTACTTATGAGTCACTTCCCATCCGATACCAAATCTAA
ATTCCCATTGGAGATTTCATATGCTATGT---------------------
>SNPs
---------------------------------------------------------------SS---------------
---S----------------------------------------------------------------------------
-----------S----------------------------------------------------------S---------
----------------------------------S---S--------------------------------S--------
-------------------------------S------------------------------------------------
------------------------SSSS----------------------------------------------------
--------------------------------------S-SSSSSSSS--------------------------------
-------------SSSSSS-------------------------------------------------------------
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----------------------------------------S------------S-S--------------SSSSSSSSS-
------------------------------------------------SS------------------------------
--------S-----------------------------------------------------------------------
-------------------S----------------S------------------------------------------S
SSSSSS-SS--------S-S--SS-S--SSS-SS----------------------------------------------
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S----S--------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------SS----------------------------------------------SSSSSSSS
SSSSS-------------------------------------------S-------------------------------
-S-----------------------------------------S--------------------S---------------
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------------------S-------------------------------------------------------------
-S-----------------S------------------------------------------------------------
----------------------------S---------------------------------------------------
------------------------------------------------S--------S-----------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
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---------------------------------------------------------S----------------------
------S------------------S-S----------------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---S------------
------------S----S------S---S--S------------------------------------------------
-----------------S--S----S------------------S----------------------S------------
S---------------S--------------------------------S----S--------------------S-S--
-----S-S------------S--------S--SSSSS-----S-----S----S---S--S----------------S--
---S-----S----S--------------SSSSSSSSSSSSSSSSSSSSS
>forward_275
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---------------GAACTGAAACCCGTTGCGTT---------------------------------------------
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>reverse_1354
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-------------------------------------------------------------------------GTCCAAG
GCCAGGGTTCTTA-------------------------------------------------------------------
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>forward_1073
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--------------CACCAAGCATCTTCGCACG-----------------------------------------------
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>reverse_2602
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-----------------------------------------TGTTAAGGTGCGGTGGACAG-------------------
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