>input_sequence_67313
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----------------------------------------------------ATGGAAGAAGGGAAAGACAAGAATAACA
CCACCGAGAAGGGGCTGTTCTCAAACATGATGCATGGGTATCCACCTCATGGAGGATATGGATACCCTCCTCAAGGTTAC
CCGCCACCAGGGGTCCCCTACCCTGCTCCCGGGGCGTATCCTCCTCCACCGCAATATGGGTACCCTCAGCCGGGTGGCTA
CCCACCTCACGGTGGATATCCCCCCGTCGGCTACCCTGGTATGCATTGCTCGTTGATCAGTTATACATAATGCACGTCCT
AATAGTGTCGTGTCTGCGGAGTTAATTTGCTCAGTTGGACCTCATTGATATGAACAACACTGTAATTGATCTTTCAGTTA
TTAGCTCAGATTTATTTATGTCATCACTTCTTGATAATCTGTTTCAGGCTACGGGGGTGGCCACGGAGGCCATGGCTATG
GCGGCGGGCACATGGGCTACGGAGGCGGCTATGGCGGCGGCGGCCATGCTCTCGGGCACCACCATGGAGGCCACGGCTAC
GGCCATTATGGTCACGGAGGCCATGGCTACGGGCACCACGGTCCCGGACACTACCACGGCGGGCACGGCTGGGGGCACCA
TGGCCATGGATATCACCACCACCACCACCACGGCAAGCACGGTTACGGCAAGTTCAAGAAGTGCAAGTGATTTGCGTCTG
CACACGGTGATTGCGCCTCATCAACTATCTTAAGTAAGCTTGGTTCCAGAAATACTCGCGCGGCTGGGAAGAGCGCTAGC
ATGTCTCCCGTGAGACTG--ATGATGCAATGCACCTGTACTGTTACTGGATACACCACATAATTTGGTGCTCC--AGATA
ATAAGGTCTGCTAATAAGTAG-----------------------------------------------------------
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>chr1B_1_TraesCS1B01G068400
ACATGAATCTTCTTAACCATGACTACTAAACCGTGAGAGGCACGACGACACGAGCAGTCAAACAATGTCGCACTGCATAA
AGCTCGTGCATTTGGTTGGAATAAGAAATGCTACAGCTGTACAGA-CCTGTGCTACGCGGCTAGCCAAGTCAGGAGGAGA
TCGAGAACTTACTCTAGTAAAGATTTGTCGTACCCAGAATAAAGTTGCAGATTTCTTAGCTAAACTATCTAGGATGGGAC
ACCAGACCGATTTGTGATTACAGGATGATCCGGACCACATTGCGGACTTATCAGCTGCAGATTGTAACCTTGTTAGTTGA
TCAATCAAGTATCGATTGTTTGTGCAAAAAAGTCAGTTTAGCCCAAGATTTTTTTTTTCAAAAATTGTGCAGCTAGCCCA
TCCTCTCATCCTTAATCCACCTACAAATGACACTCCTTTCACATATATCCTGGGAAGTGGGAACATATGATTGAAATGGA
GGCCATCCAAGACTGGAGCACATGCTCCATGGTCTAAAACTCGGTGCTCGG----GAAGCTCTCATAGTTAACTTATCAC
CATAATCCACCTCCAAGGAAGAACATATTTAGATTTAAGCACAAAGAGAAGCGACTCATCCTAGCCATCGCCCCGAATTA
GGACCCACACCACTACGTTATCTCCTCTCTCCACCCACATGGGTCCAAGTTCTAGAGATTGTATGGGTTCACAACTTCAC
ATGGCCTTGTGGCCCTTGTCACATATTGGTAAAGCTAGTATGTCTTTAGGCACCAAATAGCAACTTGATATACAATGATT
GCAAAAGCTAC----TATGTCTTTGAGCTGGCATAATGTTTCAGATTGT-ACATCAATGGTTATACAATTCATACATGTT
AC-ACAATCTAATATATATAATTTTTCTCTATGTAATATTTA-TTTTCTCTCAATATAATTTGCTAAGGATAAATACTTA
CTTTCACATTTTCTTAGAGATTCATCCTTGCCGGTAGGTCGGCAACGCAACCATGGAAGAAGGGAAAGACAAGAATAACA
CCACCGAGAAGGGGCTGTTCTCAAACATGATGCATGGGTATCCACCTCATGGAGGATATGGATACCCTCCTCAAGGTTAC
CCGCCACCAGGGGTCCCCTACCCTGCTCCCGGGGCGTATCCTCCTCCACCGCAATATGGGTACCCTCAGCCGGGTGGCTA
CCCACCTCACGGTGGATATCCCCCCGTCGGCTACCCTGGTATGCATTGCTCGTTGATCAGTTATACATAATGCACGTCCT
AATAGTGTCGTGTCTGCGGAGTTAATTTGCTCAGTTGGACCTCATTGATATGAACAACACTGTAATTGATCTTTCAGTTA
TTAGCTCAGATTTATTTATGTCATCACTTCTTGATAATCTGTTTCAGGCTACGGGGGTGGCCACGGAGGCCATGGCTATG
GCGGCGGGCACATGGGCTACGGAGGCGGCTATGGCGGCGGCGGCCATGCTCTCGGGCACCACCATGGAGGCCACGGCTAC
GGCCATTATGGTCACGGAGGCCATGGCTACGGGCACCACGGTCCCGGACACTACCACGGCGGGCACGGCTGGGGGCACCA
TGGCCATGGATATCACCACCACCACCACCACGGCAAGCACGGTTACGGCAAGTTCAAGAAGTGCAAGTGATTTGCGTCTG
CACACGGTGATTGCGCCTCATCAACTATCTTAAGTAAGCTTGGTTCCAGAAATACTCGCGCGGCTGGGAAGAGCGCTAGC
ATGTCTCCCGTGAGACTG--ATGATGCAATGCACCTGTACTGTTACTGGATACACCACATAATTTGGTGCTCC--AGATA
ATAAGGTCTGCTAATAAGTAGCGGAATCACATACCAGTCATTTGCTGCAGTTCAGGTGTTCTCTTTTGTCCACACATGGA
TGTGCTTGCTCTTGGCTAGCTAGATATCATGCCCGATCAGATCAGTGGTCAGTCCATGCCCCTAGTACACACGTCATGTG
AAGGCCGGCGCCTGGGTGCGACCGTGGTGATCATCCTGCGCAGTTGCACGGCGCAAGGTCGGCGTTCATCATGT------
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------------------------------------------AGTGGCAGGCTGGCAGCCGCTGGGGAGGCGAGCTCCGG
AGCTCCGGCGAGCAGCTACCCCCTCCCTCCCTGCCGTGCCGTGCCGTGCCAAGCTCAAGCGAGAACAAAGAGAGGTGGTC
GACAAGGTGGCTGGCCGTGTGGAACCATGGCAAGATTGTTGTTGGCCTCGGGAGGTAGGCTGGTTCTTATAAACGACCGC
CTCACCAACATCCCAATGTTTATCATGGGATTCTACCTGTTACAGTACAAGATAGCATTCATGACAAATTGGATAGGGTG
CGATTCAGTTTTTTTGTTCTATAGAAGTAAAGAGCAAGGCAAGCATAAATACCATATGATCAAGTGGGAGGCTATATGTT
CTCCAAAAGAAAAGGGTGGCCTTGGTGTGATAAACACCAAAAATTATGAATTGGTGCCTTATCTCAAAGTGGGCATGGAA
AATTCTAGTTGGGCAAGGTGGACTTTGGCTGGAAATAATCAAAGCAAAGTACTTATCGAAAGAGGTAATGGACTTCCGCC
CAAATGCCAAACTATCCCAATTTGCCAAAGGGGTGCGAAAGGTGCAACCACTGCTCTGCTTGGGTGCTGGATTCCATATG
AATAACCAAAGAGTAGAGCTCTTCTGTTTAGATAAATGGTGTGGCGAGAGGGCTCTTAGCGAATCAAACCCTAGTTTGTT
CGCCATATCGGAGCTCCCCGAGGCTAAAGTGGCGGACGTATGGGTGAAAAATCGGTGGGATCCTAGATTTCATTGATCTA
TCGGAGTCAACGAAGCGCACGAATGGAAG
>chr1A_1
ACATGAATCTTTTTAACCATGACTACTAAACCCTGAGAAAAG-GATGGCATGAGCACTCAAACAATGCCGCGGCTTGTAG
AGCTTGTGCATTTGGTTGGAATAAGAAATGCTACAGCTACTCAGACCCTGTGTTACACGGCTC-----------------
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-----------------------------AAGTCACCTTAGGCCATGATTTTTC----CAAAAATTGTTCGGCTAG----
TCCTCTCATCCTTAATCCACCTGCAAATGGCACTCCTTGGCATATATGT--------TGGGAACATATCAT---------
-GCCATCCAAGACCCGTTCTCGGG--------------AACCCGTTCTCGGGAATGAAGCTCTCATAGTTAACTTGTCAT
CGTACTCCACCTCCACGGGAAAACACATTTAGGTTTAAGCACAAAGAGAAGCGACTCATCCTAGCAATTGCTCCAAAGTA
GGACCCACACCAATATGTATCTC---CTCTCCACCCACATGGGTCCAAGTTCTAGGGCTTGTATAAGTGCACATGG----
-----CTTGTGGCCCTCGTCACAAATT-GTAAAGCTAGTATGTCTTTAGGCATCAAACAACAACTCGATATGCAATGATT
GAGTAAGCTACTATATATGGCTTTGAGCTGGAATAATGTTTCAGATTGT-ACATCAATGGTTATACAATTCATACATGTT
ATGGCAATCTAATATATATAATTTTTCTCCATGTAATATTTCTTTTTCTCTCAATATAATTTGCTAAGGATAAATACTTA
CTTTCACATTTTCTTAGAGATACATCCTTCCAGGTAGGTCGGCAACGCAACAATGGAAGAAGGGAAAGACAAGAATAACA
CCACTGAGAAGGGGCTGTTCTCAAACATGATGCATGGGTATCCACCTCATGGAGGATACGGATACCCTCCTCAAGGTTAC
CCGCCACCGGGGGTCCCCTACCCTCCTCCCGGGACGTATCCTCCTCCACCACAATATGGGTACCCTCAGCCAGGTGGCTA
CCCACCTCACGGTGGATATCCCCCCGTCGGCTACCCTGGTATGCATTGCTGG-TGATCAGTTATACATAATGCACGTCCT
AATTGTGTTGTGTCTGGGGAGTTAATTTGCTCAATTGGACCTCAATGATATGAACAACACTGTAATTGATCTTTCAGTTG
TTTGCTCGGATTTATTTATGTCATCACTTCTTCATAATTTGTTTCAGGCTACGGGGGTGGCCATGGAGGACATGGCTATG
GCGGCGGGCACATGGGCTATGGAGGCGGCTATGGCGGCGGCGGCCATGCTCTCGGGCACCACCACGGAGGCCACGGCTAC
GGCCATTATGGTCACGGAGGCCATGGCTACGGACACCACGGTCACGGACACTACCACGGCGGGCACGGCTGGGGGCACCA
TGGCCATGGATATCACCACCACCACCACCACGGCAAGCATGGTTACGGCAAGTTCAAGAAGTGCAAGTGATTTGCGTCTG
CGCACAGTGATTGCGCCTCATCAACTATCTTAAGTAAGCTTGGTTCCAGAAATACCCCCGCGGCTGGGAAGAGCGCTAGC
ATGTCTCCTGTGAGACTGCGATGATGCAATGCTCCTGTACTGTTACTAGATATACCATATAATTTGGTGCTGTATAGCTA
ATAAGGCTTGATAATAAGTAGCGGAATCAGATACCAGTCATTTGCTGCAGTTCAGACGTTCTCTTTCGTCCGTACACAGA
TGT-----------GCTAGCTAGATATCATGCTCGATCAGATTAGTGCTCAGTCCATGCCCCTAGTATGCACGTCATGTG
AAGGCCGGCGCCTGGGTGCGACCGTGGTGATCATCTTGCGCAGCCGCGCGGCCCAAGGCCGGCGTTCATCATGTAG----
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-----------------------------------------CAGTGGCAGACTGGCAGCCGCCGGGGAGGCGAGCTCCG-
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>chr1D_349
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-----------------------------AAGTCAGCTTAGCCCAAGATTTTTT----CAAAAATTGTTCGGCTAGC---
-CCTCCCATCCTTAATCCACCTGCAAATGACACTCCTTGGC--ATATGT--------TGGGAACATATCAT---------
-GCCATCCATGACTGGGGCACAGGCTCCATGGTCGAAAAACCTGTTCTCGGGAATGAAGCTCTCATAGTCAACTCATCAC
CGTACTCCACCTCCACGGAAAAACACATTTAGGTTTAAGCACAAAGAGAAGCGACTCGTCCTAGCAATTGCTCCAAAGTA
GGACCCACACCACTATGTATCTC---CTCTCCACCCACATGGGTCCAAGTTCTAGAGCTTGTATAGGTGCACATGG----
-----CTTGTGGCCCTCGTCACAAATTGGTAAAGCTAG---------------------ACAACTCGATATACAATGATT
GAGTAAGCTAC----TATGGCTTTGAGCTGGAATAATGTTTCAGATTGTTACATCAATGGTTATACAATTCATACATGCT
ATGACAATCTAATATATATACTTCTTCTCCATGTAATATTTC-TTTTCTCTCAATATAATTTGCTGAGGATAAATACTT-
---TCACATTTTCTTAGAGATACATCCTTGCAGGTAAGTCAGCAACGCAACAATGGAAGAAGGGAAAGACAAGAATAACA
CCACCGAGAAGGGGCTGTTCTCAAACATGATGCATGGTTATCCACCTCATGGAGGATACGGATACCCTCCTCAAGGTTAC
CCGCCACCGGGGGTCCCCTACCCTCCTCCCGGGGCGTATCCTCCTCCACCACAATATGGGTACCCTCAGCCCGGTGGCTA
CCCACCTCACGGTGGATATCCCCCCGTCGGCTACCCTGGTATGCATTGCTTGTTGATCAGTTATACATAATGCACGTCCT
AATTGTGTCGTGTCTGGGGAGTTAATTTGCTCAGTTGGACCTCAATGATATGAGCAACACTGTAATTGATCTTTCAGTTA
TTAGCTCGGATTTATTTATGTCATCACTTCTTGATAATCTGTTTCAGGCTACGGGGGTGGCCACGGAGGCCATGGCTACG
GCGGCGGGCACATGGGCTACGGAGGCGGCTACGGCGGCGGCAGCCATGCTCTCGGGCACCACCACGGAGGCCACGGCTAC
GGCCATTATGGTCACGGAGGCCATGGCTACGGACACCACGGTCACGGACACTACCACGGCGGGCACGGCTGGGGGCACCA
TGGCCATGGATATCACCACCACCACCACCACGGCAAGCACGGTTACGGCAAGTTCAAGAAGTGCAAGTGATGTGCGTCTG
CGCATGGTGATTGCGCCTCATCAACTATCTTAAGTAAGCTTGGTTCCAGAAATACCCCCGCGGCTGGGAAGAGCGGTAGC
ATGTCTCCTGTGAGACTGCGATGATGCAATGCACCTGTGCTGTTAC--GATATACCATATAATTTGGTGCGGTATAGCTA
ATAAGGTTTGATAATAAGTAGCGGAATCAGATGCCAGTCATTTGCTGCAGTTCAGACGTTCTATTTCGTCCGTACACAGA
TGT-----------GCTAGCTAGATATCATGCTCGATCAGATCAGTGCTCAGTGCATGCCCCTAGTACACACGTCATGTG
AAGGACGGCGCCTGGGTGCGACCGTGGTGATCATCCTGCGCAGTTGCACGGCGCAAGGCCGGCGTTCATCATGTAGTGGC
AGGCTGGCAGCCGCTGGGGAGGCGAGCTCCGGCGAGCAGCTACCCCCTCCCTCCCTACCGTGCCACTAATAAGTAGCGGA
ATCATATACCACATATCAGTCATTTGCTGCAGTTCAGATGTTCTCTTTCGTCTAGCTACTGGCTAGCTAGATATCATGCT
CGATCAGATGAGTGGTCAGTTCATACCGCTAGTACGCACGTCATGTGAAGGCCGGCGCCTGGGTGCGACCGTGGTGATCA
TCCTGGGCAGCCACGGCGAGAGGCCAGCGTTCATCATGTAGCAGTGGCAGGCTGGCAGGCGCCGGGGAGGAGAGCTCCG-
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>SNPs
-----------S--------------------S-----SSSSS--S-S--S-----S----------S---SSSSSS--S
----S---------------------------------SSS-----------S---S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------------SSSS----------S-S------SSS
----------------------S---------------SSSSSSSSSSSSSSSSSSS-----------S--SSSSSSSSS
S---------------S-----S-----------S----SS-S--S----------------------------------
-S--S----------S----S----S------S--------------------------------S--S--S--S--S--
---------------S--SSSSSSSS-------------------------------S------S---S----SSSSSSS
SSSSS-----------S------S----------------------------S----S-S-----S--------------
-SSS---------------S-----------S------------------------------------------------
-S---------------------------S-----------S--------------------------------------
---------------------S---------S-------------------S----------------------------
----------------------------------------------------------S---------------------
--------S---------------S-------------------------S--------------------S--------
--------------------------------------------------S-----------------------------
---S------------S---------------------------S-----------------------------------
-------S------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------S----------S------------------------------------
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-S-----------------------------------------------------S-S----------------------
--------S--------------------------------------S----S----S-------------SS----S--
-------S--S------------------S-------------------------SS---------S----SS---SS--
---SSSSSSSSSSS------------------S--------------S--------------------------------
----------------------------------------------------------S---------------------
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--------------------------------------------------------------S----------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_133
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---------------------------------ACAGCTGTACAGACCTGTGC---------------------------
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>reverse_1917
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----------------------------------------------------------------------------TGGA
TGTGCTTGCTCTTGGC----------------------------------------------------------------
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