>input_sequence_67304
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--------ATGGCGCCGGAGTTTGGGTGGTGGCCGATGTCGCCGTGGCTGAGCCCGGGCGCGGCGTCGTTCATCTTCTTC
AACGTCCTCGTTGGCGCCATCGCGGTCATGTCGTCGTCCCGGGGGCC------GGAACCGGCCGCCCGGCGCAAGCTCGT
TCGCACGGCCTCGACCGTCGTGCTGGAGAGCCTGCGTTCGATCTCCAACTTCCCCTTCCACTCGCTGGGCGACTACGCCG
TCGCCGCGTACTCTGCACCGGCGTCGTCGCAGCTCCACCACGTGCAAGCCCAGTACTATAGTACTACGATCCAAGAGCAA
GAAGCACGTGGGGTCGACAGGGTGGAGCCCGAGCCGGCATCAGTCGCCCAAGAAGAAGCTGTAGTGGCGGCCACAACAGC
CACCTCGCCGCAGAGCGCGCCTGTCGCGGCACCGGCGGCACAGGATGTGAAAAGGATGGTGGAGCCCGAGCCAGCACCAG
TCGCCCAAGAAGAAACCGTAGCGGCGGCCACAACAACCACCTCGCCGCAGAGCGCGGCACCGGCAGCACTCGACGCGTCC
GCGGCGGCGACTCAGGGCGAGGTCGAAGACGGGGAGTCCATCAGCTTGGACGAGGCATACGCGCTGGCGCGCGCAGGGCG
GCAGTCCGCCGCCGACACGGTGGCCACGGTGCCAAAGAAGGCCAAGGGGCGAGGAGCCTACGGATGCGGGCGGGGAACGG
AGGACGTCGAAGGGAAGGCGGAGGTGGACGCGCGGGCGGAGCAGTTCATCCGGCAGTTCCGGGAGGAGCTCAAGCTGGAG
CGCATCAACTCCATCCTCAACCACACCCACGCGCTGCGCCGCACCGCAGGGGCACGCTAG--------------------
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>chr7B_1_TraesCS7B01G081400
GATTTTTTTTTTTTAAAAGCACGAGGTGCTAGAGTTGCTCTAATTTGTCTGCCCGTCGTCATCAGGCTACGCACCTGTAG
GCGATGTCATGCGTGGCCAAGGCGCATGCTACGCTGGCCGCCACTAGATTTGTAACGTGGATACGCGTAACCAGGACTCC
ACAAATGCGACAGCTCTTCGTTGCTAGGTGAAGTTAGGTCGGAATCCACCGGTACGAGCTGATGTTTCTCGGTCTTTGAT
CGAGACACACCGAGAT-CTTCCTGCACACGTTGACCACTCGTCAGTAGCCTTCCGACAGCGCACAGCCCTGTGCCTTGCA
CGCCAGTCCAACTCCAACCTGCCCGACGAGACTCCAAAGTCCAAACCGCTCTCCTCTGCATGGAAACGTCGATTTCATTT
CCTGCCTCGTCGCCACGAGAAAATCAGCAGTACAGTAAAATAAGATCGGCAGATACACGAAGTAGGACCTGTCATGGCAC
AGGGAACAGAGTCAGAGAG--ACACGGACCGACCGTCGACGCTCACCGTGTGTACGCGGCCTCCGGCGAGTGTACTCACC
ACTAATTCAGGTGGAAACACGA----------AGACACGTGATCGCGATGGT--CGATGTCCGAGCAATTTTCAAGTGCC
GGGGAGCGGCGAACCTTCTCGCTGGCCGCCTACCTGGCC--------GGCCCAAGTTG--------CACGCACCACATGC
CGCGAGGAGCAAAGCAGAGAGCAACAGCGATGTGCCGTACGCGGCGCAGGAATGCAGCTCTTCCATCCTGGGCGCTCGGT
GTTCCCACCTTTGGCCCCCATCCTTTGCGTTGTTTATTGACAG-------GCCAGGCGCGAGAAGAGCTGTCACGGTCCA
GGACCCAGAG-CCTTATAAGTACGCACAGCTCAC-----CTGAGCAAAGGCACTGCATTATTCATCGCTT---CGACACT
CGACAGCCGACACAGAGCGAGTCGTCACCCAGAGCAAGCAAGCAAGAAGATCGGGAGGAGGGTCGGAGTTTGATCGCCAT
TGGA-TCGATGGCGCCGGAGTTTGGGTGGTGGCCGATGTCGCCGTGGCTGAGCCCGGGCGCGGCGTCGTTCATCTTCTTC
AACGTCCTCGTTGGCGCCATCGCGGTCATGTCGTCGTCCCGGGGGCC------GGAACCGGCCGCCCGGCGCAAGCTCGT
TCGCACGGCCTCGACCGTCGTGCTGGAGAGCCTGCGTTCGATCTCCAACTTCCCCTTCCACTCGCTGGGCGACTACGCCG
TCGCCGCGTACTCTGCACCGGCGTCGTCGCAGCTCCACCACGTGCAAGCCCAGTACTATAGTACTACGATCCAAGAGCAA
GAAGCACGTGGGGTCGACAGGGTGGAGCCCGAGCCGGCATCAGTCGCCCAAGAAGAAGCTGTAGTGGCGGCCACAACAGC
CACCTCGCCGCAGAGCGCGCCTGTCGCGGCACCGGCGGCACAGGATGTGAAAAGGATGGTGGAGCCCGAGCCAGCACCAG
TCGCCCAAGAAGAAACCGTAGCGGCGGCCACAACAACCACCTCGCCGCAGAGCGCGGCACCGGCAGCACTCGACGCGTCC
GCGGCGGCGACTCAGGGCGAGGTCGAAGACGGGGAGTCCATCAGCTTGGACGAGGCATACGCGCTGGCGCGCGCAGGGCG
GCAGTCCGCCGCCGACACGGTGGCCACGGTGCCAAAGAAGGCCAAGGGGCGAGGAGCCTACGGATGCGGGCGGGGAACGG
AGGACGTCGAAGGGAAGGCGGAGGTGGACGCGCGGGCGGAGCAGTTCATCCGGCAGTTCCGGGAGGAGCTCAAGCTGGAG
CGCATCAACTCCATCCTCAACCACACCCACGCGCTGCGCCGCACCGCAGGGGCACGCTAGCCGCCTAGCCGGTGCCGCTA
AGACGATCGTCTCGTTCGTTTGCGT--AGAGAGGAGAATATTTCATTTGCTTGTACAG-AATTCATGGGTCATTCCCGCA
GAGAATGATGCGACAGCACACAGTTTTGGATTGCTTACTGTAACCACATACT----GGCTGAGAAAACTGCCAAAACATC
GCA---------------CATCTCTCGACCTGCCGAAAGGACGGGTCGACGACGGTGTAGCTATACCGCAATACGCCTAC
GTGCAGGGTGCCGGTGCCGGTGACGATGACGGTGAAGCCGGCGTAATTGA-TTACCACCAGACTGTTTGCGAATCAATCG
GAATGCTCAACTTTTGAGCTTCTTTTCTTAGAGCATCGCAGCTCGGCTCCAAATCCTCATTGCTCTGGATACACAACAAC
ACTACCCTAAACCTTAATTTGTTCAAACATTGTTGTAAAACAGTAAAACAGAGCTACCTACAGCCTTTCACAGCAATTTG
ACACCCTGAACCGTCCGATCATCTCGCTCAACGCTCCTGGTCATCTTACCGTCGGCCCGTGCGTTCTCTGCA--------
------------------------CCCTTTTCTACGCTCAGCCTGACCATCCTGGGCCGGCCCAAAGTTACTGGGCTGCT
ACTCCGGAGAACGACCTGAACCCCGTCTCATTCGCTAATGCAGCT-AACGTTCCATCCTGAATGGACGGTTGCGATCGAT
GCGGGGCTTCGTGTTGGTCATCGCCGATTTCAGAATCATGCAGGCGGAGCCGGTGGCGGAGTCTCCTCTCGCCGCCGCAA
GCCGTCCCAAA--ACATG--GCACCGATTGCCGCGTCTTATTCAT-----CCCCCTTCCACACAGGGGTGAAACTGCCCT
CTGGCCTTCACCTCCCGTCAACTCCATCCGCGTATTGTTTCCAATCCTTGCCATTGACCTTGGAAGCAAGCTCTCTAGCG
ACTGCGGTGGATTCATCACGGATCTGGGAGAAAAAGGGTATGGAAGGAGAGACTGTTGTGCAACCATCCCTATTTCCATC
CCGCA
>chr7D_19
------------------GCACGAGGTGCTAGAGTTGCTCTAATTTGTCTGTCGATCATCATCAGACCACGCACCTGTAG
GCGATGACATGCGTGGCCAAGGCGCATGCTACGCTGGCCGCCACTAGATTTGTAACGCGGACACGCGTAACCAGGACTCC
ACAAATGCGACAGCTCTTCGTTGCTAGGTGAAGTTAGGTCGGAATCCACCGGTACGCGCCGATGTCTCTCGGTCTCTGAT
CGAGACGCAA-GAGAT-TTTCCTGCACACGTTGACCACTCGTCACTAGCCTTCCCACAGCGCACAGCCCTGTGCCTTGCA
CGCCAGTCCAG------CCTGCGCGACGAGACTCCAAAGTCCAAACCGCTCTCCTCTCCATGGAAATGTCGATTTCACTT
CCTGCCTCGTCGCCACGAGCAAATCAGCAGTACAGTAAAATAAGATCGGCAGATACACGAAGTAGGACCTGTCATGGCAC
AGGGAACAGAGTCGGAGAGAGACACGGACCGGCCGTCGACGCTCACCGTGTGTACGCGGCCTCCGGCGAGTGTACTCGCC
ACTAATTCAGGTGGAAACACGA----------AGGCACGTGATCGCGATGGT--CGATGTCCGAGCAATTTTCAAGTGCC
GGGGAGCGGCGAACCTTCTCGCTGGCCGCCTACCTGGCC--------TGCCCAAGTTGCCGCAAGCCACACACCACATGC
AGCGAGGAGCAAAGCAGAGAGCAACAGCGATGTGCCGTACGCGGCGCATGAATGCAGCTATTCCATCCTGGGCGCTCGGT
GTTCCCACCTTTGGCCCC-ATCCTTTGCGTTGTTTATTGACAG-------GCCAGCCGCGAGAGGAGCTGTCACGGTCCA
GACTCCAGAGCCCT-ATATATACGCACAGCTCACCTGAGCTGAGCAAAGGCACCGCATTATTCATCCATCCGTCGACA--
-----GCCGACACAGAGCG-----------------AGCAAGCAAGAAGATCGGGAGGAGGATCGGAGTTTGATCTCCAT
TCGA-TCGATGGCGCCGGAGTTTGGGTGGTGGCCGATGTCGCCGTGGCTGAGCCCTGGCGCGGCGTCGTTCATCTTCTTC
AACGTCCTCGTCGGCGCCATCGCGGTCATGTCGTCGTCCCGGGGGCGGGGGCAGGAACCGGCCACCCGGCGCAAGCTCGT
TCGCACCGCCTCCACCGTCGTGCTGGAGAACCTGCGTTCGATCTCCAACTTCCCCTTCCACTCGCTGGGCGACTACGACG
TCGCCGCGTACTCTGCACCGGCGGCGTCACAGCTCCACCACGTGCAAGACCAGGAGTA------TACGTTTCGAGAGCAG
GAGGTACGGGAGGTGAGCAGGATAGAGTCCGAGCCGGCATCAGTGGCCGAAGAAGAAGCTGTAGTGGCGGCCGCAACAAC
CACCTCGCCGCAGAGCGCGCCTGTCGCGGCACCGGCGGCACAGGAGGTGAACAGGATGGTGGAGCTCGAGTCAGCATCAG
TCGCCCAAGAAGAAACTGTAGCGGCGGCCGCTACAACCGCCTCGCCGCAGAGCGCGGCACCGGCAGCACTCGACGCGTCC
GCGGCGGCGACTAAGGGCGAGGTCGAAGCCGAGGAGTCCATCAGCTTGGACGAGGCATACGCGCTGGCGCGCGCGGGGCG
GCAGTCCGCCGCCGACACGGTGGCCACGGTGCCGAAGAAGGCCAAGGGGCGAGGAGCCTACGGATGCGGGCGGGGAACGG
A------------------GGAGGTGGACGCGCGGGCGGAGCAGTTCATCCGGCAGTTTCGGGAGGAGCTCAAGCTGGAG
CGCATCAATTCCATCCTCAACCACACCCACGCGCTGCGCCGCACCGCCGGGGCGCGGTAGCCGG-----CGCCGCCGCTC
GGCCGACCGTCTCGTTTGATCGTGTAGAGAGAGGATAATATTTCATTTGCTTGTACAG-CATTCATGGGTCATTCCCGCA
GAGAATGATGCGACAGCACACAGTTTTGGATATGTTT---------TATACTAGCAGGCAGAGAGAACTGCCAAAACATC
GCATACTGGCAGATCGCACATCTCTCAACCTGCGGAAAGGACGGGTTGACGACGGTATGGCTATACCGCAATACGCCTAC
GTGCGGCGTGCCGGTGCCGGTGACGATGACGGTGAAACCGGCGTAATTGATTTACCACCAGACTGTTTGC----------
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>chr7A_27
--------------------------TGCTAGAGTTGCTCTAATTTGCCTGCCCGTCGTCATCAGACCACGCACCCGTGG
GCGATGACATGCGTGGCCAAGGCGCACGCTACGCTGGCCGCCACTAGATTTCTAACGCGGATACGCGTAATCAGGACTCC
ACAAATGCGACAGCTCTTCGTTGCTAGGTGAAGTTAGGTCGGAATCCACCAGTACGCGCTGATGTTTTTCGGTCTCTGAT
CGAGACGCAA-GAGATATTTCCTGCACACGTTGACCACTCGTCAGTAGCCTCCCCACAGCGCACAGCGCTGTGCCTT-CA
CGCCAGTCCAACTCCAACCTGCGCCACGAGACTCCAAAGTCCAAACCGCTCTCCTCTCCATGCAAATGTCGATTTCACCT
CCTGCCTCGTCGCCACGAGCAAATCGGCAGTACAGTAAAATAAGATCGGCAGATACACCAAGTAGGACCTGTCATGGCAC
GGGGAACAGAGTCAGAGAG--ACAAGCACCGGCCGACGACGCTCACCGTGTGTACGCGGCCGACGGCGACGGCGAGTAG-
--TAATTAAGGTTGAAACACGCCTGAAGAGGGAGACACGTGAGTGAGCAGAGCACGATGGTCGAGCAATTTTCAAGCGCC
GGT--GCGGCGAACCTTCTCGCTGGCCGCCCACCTGGCCACCTGGCCGGCCCAAGTTGCCGCATGCCACACACCACATGC
CGCGAGGAGCAAAGCAGAGAGCAACAGCGATGTGCCGTACGCGGCGCAGGAATGCAGCTATTCCATCCTGGGTGTTCGGT
GTTCCCACCTTTGGCCCCCATCCTTTGCCTTGTTTATTGGCAGCTGGCAGGCCGGCCGCGAGAGGAGCTATCACGGTCCA
GGATCCAGAG-CCT-ATATATACGCACAGCTCACCTGAGCTGAGCAAAAGCACTGCATTATTCATCGCTC---CGACA--
-----GTCGACACAGAGCGAGTCCTCACCCAGAGCAAGCAAGCAAGAAGATCGGGAGGAGGGTCGGAGTTTGATCGCCAT
TTGATTCGATGGCGCCGGAGTTTGGGTGGTGGCCGATGTCGCCGTGGCTGAGCCCAGGCACGGCGTCGTTCATCTTCTTC
AACGTCCTCGTCGGCGCCATCGCGGTCATGTCGTCGTCCCGGGGGCC------GGAACCGGCCGCCCGGCGCAAGCTCGT
TCGCACGGCCTCGACCGTCGTGCTGGAGAGCCTGCGCTCGATCTCCAACTTCCCCTTCCACTCACTGGGCGACTACAGCG
TCGCGTG---CTCTGCACCGGCGTCGTCGCAGCTCCACCACATGCAAGCGCAGTACTATAGTGCTACGATCCAAGAGCAA
GAAGCGCGGGAGGTGAGCGCGGTGGAGCCCGAGCCGGCATCAGTCGCCCGAGAAGAAGCTGTAGTGGCGGCCGCAACGAC
CACCTCGCCGCAGAGCGCGCCTG---------CCGTGGCAGAGGAGGTGAACAGGA---TGGAGCCCGAGCCAGCGTCAG
ACGCCCAAGAAGAAACTGTAGCGGCGGCCACAACAACTACCTCGCCGCAGAGCGCGGCACCGGCAGCACTCGACGCGTCA
GCGACGGCGACTCAGGGCGAGGTCGAAGACGGGGAGTCCATCAGCTTGGACGAGGCGTACGCACTGGCGCGCGCAGGGCG
GCAGTCCGCCGCCGACACGGTGGCCACGGTGCCGAAGAAGGCCAAGGGACGAGGAGCCTACGGATGCGGGCGGGGAACGG
AGGACGTCCAAGGGAAGGCGGAGGTGGACGCGCGGGCGGAGCAGTTCATCCGGCAGTTCCGGGAGGAGCTCAAGCTGGAG
CGCATCAACTCCATCCTCAACCACACCCACGCGCTGCGCCGCACCGCCGGGGCACGCTAGCCGA----CCGGCGCCGCTC
GGCCGATCCTCTCGTTTGATCGTGTAGAGAGAGCAGAATATTTCATTTGCTTGTACAGCCATTCATGGGTCATTTCCGCA
GAGAATGATGCGACAGCACACAGTTTTGGATTATTTACTGTAACCATATAGTGGCAGGCAGAGAGAACTGTCAAAACATC
ACATAT--------------------------------------------------------------------------
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>chr7A_2272
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----------------------------ATTGTTGTAAAGCAGTAAAACAGAGCTACCTACAGCCTTTCACAGCAATTTG
ACACCCTGAGCCGTCCGATCATCTCGCTAAACGCTCCCGATCATCTTCCCGTCACCCTGCGCGTTCTC------------
-------------------CACAGCCTTTTACTACGCTCAGCCTGATCGTCCTGGGCCGGCCCAAAGTTACCGGGCTGCT
ACTCCGGAGAACGACCTGAACCCCCTCTCATTGGCTAATGCAGCTTAACGTTCGATCCTGAATGGACGGTTGCGATCGAC
GCAGGGCTTCGTGT---TCGTCGCCGATTTCAGAATCGTGCAGGCGGAGCTGGTGGCAGCGTCTCCTCTCGCCGCCGCAA
ACCGTCCCAAA--ACACATTGCACCAATTGTCGCGTCTTATTCAT-----CCCCTTTCCACACAGGGGTGAAACTGCCCT
CTGGCCTTCACC----GTCACCTCCATCCATGTATTGGTTCCAATCCTTGCCATTGACCTTGGAAGCAAGCTCTCTAGCG
ACTGTGATGGATTCATCACGGATCT-GGAGAAAAAGGGTATGGAAGGAGAGAC---------------------------
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>chr2B_2276
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--------------------------------TTGTAAAACAGTAAAACAGAGCTACCTACAGCCTTTCACAGCAATTTG
ACACCCTGAACCGTCCGATCATCTCGCTCAACGCTCCAGGTCATCCTACCGTCGGCCCGTGCATTCTCTGCA--------
------------------------CCCTTTTCTAGGCTCAGCCTGACCATCCTGGGCCGGCCCAAAGTTACTGGGCTGCT
ACTCCGGAGAACGACCTGAACCCCATCTCGTTCGCTAATGCAGCT-AACGTTCCATCCTGAATGGACGGTAGCGATCGAT
GCGGGGCTTCGTGTTGGTCATCGCCGATTTCAGAATCATGCAAGCGGAGCCGGTGGCGGAGTCTCCTCTCGCCGCCGCAA
GCCGTCCCAAA--ACATG--GCACCAATTGCCGCATCTTATTCAT-----CCCCCTTCCACACAGGCGTGAAACTGCCCT
CTGGCCTTCACCTCCCGTCAACTCCATCCACGTATTGTTTCCAATCCTTGCCATTGACCTTGGAAGCAAGCTCTCTAGCG
ACTGTGGTGGATTCATCACGGACCTGGGAGAAAAAGGGTATGAAAGGAGAGACTGTTGTGCAACCATCCCTATTTCCATC
CCACA
>chr1D_2308
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----------------------------------------------------------------CTTTCACAGCAATTTG
ACACCCTGAACCGTCCGATCATCCCGCTAAACGCTCCCGATCATCTTCCCGTCACCCTGCGCGTTCTCCACAGCCTTTTA
CTTTTTTTTTAGGTGTATCCACAGCCTTTTACTACGCTCAGCCTGACCGTCCTGGGCCGGCCCGAAGTTACTGGGCTGCT
ACTCCGGAGAACGACCTGAACCCCCTCTCGTTCGCTAATGCAGCTTAACGTTCGATCCTGAATGAACGGTTGCGATCGAC
GCGGGGCTTCGTGT---TCGTCGCCGATTTCAGAATCGTGCAGGCGGAGGTGGTGGCAGCGTCTCCTCTCGCCGCCGCAA
ACCGTCCCAAAATACACG--GCACCAATTGTCGCGTCTTATTCACCCCGGCCCCTTTCCACACAGGGGTGAAACTGCCCT
CTGGCCTTCACC----GTCACCTCCGTCCATGTATTGGTTCCAATCCTTGCCATTGACCTTGGAAGCAAGCTCTCTAGCG
ACTGCGATGGATTCATCACGGATCT-GGAGAAAAAGGGTATGGAAGGAGAGAC---------------------------
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>SNPs
SSSSSSSSSSSSSSSSSS-----------------------------------------------S-S------------
------S--------------------------------------------------S----------------------
--------------------------------------------------------S------------------S----
------S--SS------S------------------------------------S-------------------------
----------------------S----------------------------------S--------S----------S--
-------------------S------------------------------------------------------------
-------------------------------S------------------------------------------------
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---------------------------------------------------------------------S----------
-----------------------------------------------------------S--------------------
-------------------------------------------------------S-------S----------------
---S----------S---SS-------------------------------------------------S--------SS
SSSSS------------------S--------------------------------------------------------
-S-----------------------------------------------------S------------------------
-----------S--------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------S-----------------
--------S-S---SSS-------------------------------------------------------S-----S-
---------------------------------------------S-----S------------------------S---
----------------S---------------------------------------------------------------
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---------------------------------S----------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------S---------------SSSSS----S------S
S-S-------------S-S-S-S------------------------------------S--------------------
--------------------------------SS------------S------------S----S---------------
--------------------------S------S------------S---------S-S---------------------
----S-S-----------------------------S---------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
-------------------------------------S------------------------------------------
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------------------------S-------------------------------------------------------
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-------------------------S------------------------------------------------------
-----------------------------S--------------------------------------------------
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--S--
>forward_295
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-----------------------------------CACTCGTCAGTAGCCTTCCG-------------------------
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>reverse_2281
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----------------------------------------GCTCGGCTCCAAATCCTCAT--------------------
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