>input_sequence_67292
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---------------------------------------------------------------------ATGCGCTCCGA
CGAGCTCCCCGTCG---------------------------------------------ACTCCGCCGGAGTGGAGCTGC
AGCTCTTTCACGGGCACA---------ACGACGGCGACGGCAGCGCCAGGTTCGTGGACGAGGAAGCCTGGGCAGAGTCA
TCATCGGCGACGGCTCTGGATGTGGCGAAGCGGGCGGCGGTGGGAGTGGGCGCGCGGGTGCTCTTCTACCCGAAGCTGGC
CTACAAGCTGGTGGCCGGCCGGTCGGCTCCGGGTAAAGCCTCGGAGGAGTCGTCGTCATCGTC------ATCGGCGACGA
CTCTAGACGCCGCGAAGCAAGCGGCGGTGGGCGTGGGCGCGCGGGCGCTCTTCTACCCGACGCTCGCCTACAGCCTGGCC
CGGAACCGCCTCTCGCCGGCCGGCTTCAAGTGGTGGCACAAGATCACGGACACCCACATGCTCCTCGGCGCTGTCCCGTT
CCCGAGCGACGTGCCGCGCCTCCGCGCCCTGGGCGTCACCGCCGTGGTCACGCTCACCGAGCCCTACGAGCGGCTCGTCG
ACGCGAAGCTGTACAAGGCCCACGGCATGGAGAACCTGGTGCTGCCCACCACGGACTACCTCTACGCGCCGTCGCAGAAG
GACCTCCGCGACGCCACGGCGTTCATCCACGGCAAGGAGGGCGGCGGGCTGACC---TACGTGCATTGCAAGGCCGGGCG
CGCGCGCAGCGCCACGGTGGTGATGTGCTACCTGGTGCGGTACAAGGGGATGACGACGAAGCAGGCGTACGATCACGTGC
GGTCGTGCCGGTCCAGGGTGTCGCTGGCTCCGGCGCAGTGGCAGGCGGTCCAGGACTTCGAGGACTTCTACCGGCGGCCG
GCCGGTAGCTCGGAGTGA--------------------------------------------------------------
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>chr5D_1_TraesCS5D01G503200
GGGTTCCGGAGGCATCTGCTCTCCCGACCAACCGTGCACGCGGTCGTCGGGATGGGATCGCCGGAGGTAGCACAGTGAGA
GGAACAGTAGATGACGGCTAGGGTTGTACAAGAGGGAGTGAGTGAACTGAGTTAGGGTTCACTCCACTGGCCAGCGCCTT
CTTATATAGGCCATCTCGGACAGTGGCGCTTCCGTTAGCGACTCGTTAATTAATTAACAATTCTTGAGCGGCTCATTCCC
GCGGCGCGCGCGTCAGACGAGACGAGACGAGGCGAGGCGAGGCGAGGCGGGCGGCGGAGGAGGAGGAGCGCGCGTGTACA
GCTCATATTCCCAAGCTCCCAATAGCTAAACCTTATTTGGCCACTACAGGAGCAACTGTTAATGGTCATTATGGAGAAAT
CATTTACAAGTGGTAGAGCAGCCCTTATAAAGAGGTCTCACTCTTTTTACTGTAGCAGCAGCAGTATGGGACTAAACTTC
CCACACTTCCCACCACTTGCCGTACACATGCATGGGCCTTAGAGATTAATTAGGGATTATTGTCTTATATGGGCCTAAGC
CCATCCATAATCCATCACCATGTATCTTTTTGTGTTTCTTTTTTTTTTTGGTTCCTTTGTTTGTTTGATGTAATTCTATC
GGTTAATTGCTTTGTTAATTCAAAAGCTGGGCTATCTTGAACATTCGTTCTAT---AAAAAGATTGTGTGGTAGATGAGC
ACGCGACGTCTTTTTTCTTGCCCCCTGTATGTGCGTGACGATTAACTGTTTCATAAAAATAAAAAATAAAAACTTTGCCA
TGGTTTACACGTTGGGACAGATCGCTTTGATACAGTCCATTACAGATACGAAGACGTG---------CAAGAGCAGGTCT
CGGAGATTAAACGGGATACAAGTTACG---TGCCTTATATT------------GATCCCGTGGAGCAGATTTTCCGAGGG
GTTCAGATCGACCGCAGCGGATTGCATCGAGAGATCGACTTCGACGAACAC--TTCCTCACGATCAGAGATGCGCTCCGA
CGAGCTCCCCGTCG---------------------------------------------ACTCCGCCGGAGTGGAGCTGC
AGCTCTTTCACGGGCACA---------ACGACGGCGACGGCAGCGCCAGGTTCGTGGACGAGGAAGCCTGGGCAGAGTCA
TCATCGGCGACGGCTCTGGATGTGGCGAAGCGGGCGGCGGTGGGAGTGGGCGCGCGGGTGCTCTTCTACCCGAAGCTGGC
CTACAAGCTGGTGGCCGGCCGGTCGGCTCCGGGTAAAGCCTCGGAGGAGTCGTCGTCATCGTC------ATCGGCGACGA
CTCTAGACGCCGCGAAGCAAGCGGCGGTGGGCGTGGGCGCGCGGGCGCTCTTCTACCCGACGCTCGCCTACAGCCTGGCC
CGGAACCGCCTCTCGCCGGCCGGCTTCAAGTGGTGGCACAAGATCACGGACACCCACATGCTCCTCGGCGCTGTCCCGTT
CCCGAGCGACGTGCCGCGCCTCCGCGCCCTGGGCGTCACCGCCGTGGTCACGCTCACCGAGCCCTACGAGCGGCTCGTCG
ACGCGAAGCTGTACAAGGCCCACGGCATGGAGAACCTGGTGCTGCCCACCACGGACTACCTCTACGCGCCGTCGCAGAAG
GACCTCCGCGACGCCACGGCGTTCATCCACGGCAAGGAGGGCGGCGGGCTGACC---TACGTGCATTGCAAGGCCGGGCG
CGCGCGCAGCGCCACGGTGGTGATGTGCTACCTGGTGCGGTACAAGGGGATGACGACGAAGCAGGCGTACGATCACGTGC
GGTCGTGCCGGTCCAGGGTGTCGCTGGCTCCGGCGCAGTGGCAGGCGGTCCAGGACTTCGAGGACTTCTACCGGCGGCCG
GCCGGTAGCTCGGAGTGAAGCCAACCGCTCCAACTCTGCGGCTGGATCATGCGAGCTCGACGCTAGGTTTTGTGTATATA
TATAGCTTCCACAGGTGCTGG-------ACGTGAGTATCAATGTTCGAACACTGTTCCGTTATTCCTAAAG-----TAAT
GTACTAAACTACTCTGTTGTTTTATTTTATTTTTGCCAAGTGTACGATATTATTTCATGGCCGCTTTTGAATTTCCAAAA
AAAATGGACGATCTAATTAATCTTTTGGAATTTTTCCTATGTTGATTGTTGATTTGCCAGATTGATTAATCCTACAGGAA
TAGTCCCCAAGAAGTTCATTATTGCACTACATTTAGAAAAA---AAAAATCCACTCAAACATCTTGCA--GAAATTTTTT
TCTTTTCCATTGTTTAATCAAACACGCTTTGGTACAAAACAAACTAGAGGCTAGCGTGCTCTGCCGCACTGTTCTTCACT
CACGGGAAGG--ATAATTACATAATTGATTAACTCTTTCTTCCAAGTAAGTTATTGCGGTCGGTCGCATCGTTTTGGTTT
TATCTATGTTAGCTTGAGTTTTAGTTATGCTATATATGGCGGTGTTTTTTTCTC---ATTTGTATATTGTGTTGGACTGT
TGTTGGAGATGAATTTTGTTAAGCCTAGAAGAAACAGTATTTGTTTAGAGAAGAGTTAACTTGTTATGTGCATGTTGTAA
TGTT--------TTTCCACTTCGGTGTCAGCCCGTGTTGATTA-CGTGAGCCAGTTTTTTTTTTTTTTGAGAAGAATTAC
GTTTTTTTGAGACATCGAGTGGAAGTGAGCCAGTTGGAAGCTCTATTCCATGGAAGTGCTCCTATAGCTCACATGGGCCG
GCCAAAGAAAATCTCACTCGCTCAGCTCAGCTTGCTTGCTTAGATTTTTTTCGCGCCCGCTCAGAAAAAATGGCAATCAA
ATTTTTCATTAACTTTTTTATTAAATAAAAATATGTTCATGAATTATAAAAAAATTGGATTTAAAAAATGAATTAAAAAA
CTATGATTT
>chr5B_613
TCCTATA-------------------------------------------------------------------------
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-----------------------------------------------------------TTTGTTCGATGTAATTCTGAC
CGTTGATGGTTTTGTTAATTC-AAAGTCGGGCTCTCTTCAACTTCCGTTTTTAAAAAAAAAGATCGTGTGGTAGATGAGC
ACGCGACGTCTTTTTTGTTG-CCCCTGTATGCGCGTGACGATTAACTGTTTCATAAAAA--------AAAAACTTTGCCA
TGGTTTACACGTTGGGACAGATCGCTTTGATACAGTCCATTACAGATACGAAGACGTG---------CAGGAGCAGGTCT
CGGAGATTAAACGGGATACAAGTTACG---TGCCTTATATT------------GATCCCGTGGAGCAGATTTTCCGAGGG
TTCC-GATCGACCGCAGCGGATTGCATCGAGACATCGACTTCGACGAACAC--TTCGTCACGATCAGAGATGCGCTCCGA
CGAGCACACGTTCGGCCCCGCCGGAGTGGGGCTGCAGCACCTTCACGGGCACGTCGATAACCCCGACGGAGTGGAGCTGC
AGCTCCTTCGCGGGCACTTCTTCTTGGACGACGACGACGGCAGCGCTAGGTTCGCGGACGAGAAAGCCTCGGCAGAGTCA
TTGTCGGCGACGGCTCTGGACGCGGCGAAGCGGGCGGCGGTGGGAGTGGGCGCGCGGGTGCTCTTCTACCCGAAGCTGGC
CTACAAGCTGGTGGCCGGCCGGCCGGCTCGGGGCAAAGCCTCGGAGGAGTCGTCGTCATCGTCATCGTCATTGGCGACGA
CTCTAGACGCGGCCAAGCACGCGGCGGTGGGCGTGGGCGCGCGGGCGCTCTTCTACCCGACGCTCGCCTACAGCCTGGCC
CGGGACCGCCTCTCGT---CCGACTTCCACTGGTGGGACCGCATCGACGGCACCAACATCCTGCTCGGCGCCGTCCCGTT
CCCGAGCGACGTGCCGGCCCTCCACGCCGACGGCGTCCGCGCCGTCGTCACGCTCACCGAGCCCTACGAGCGGCTCGTGC
CCAAGTCACTGTACGTTAAACACAAGATCGAGAACCTGGTGCTGCCAACCACGGACTACCTCTACGCGCCGTCGCAGAAG
GACCTCCGCGAAGCCACGGCGTTCATCCGCGGCGTCGCGGAGAAAGGGGAATCGGCGTACGTGCACTGCAAGGCCGGGCG
CGCGCGCAGCGCCACGGTGGTGATGTGCTACCTGGTGAGGTACAAGGGGATGACGGCGGAGGAGGCGAAAGCACACGTGG
AGAGGTGCCGGCCCAGGGTGTCGCTGGCTCCGGCGCAGTGGCAGGCGGTCCAGGACTTCGAGGACTTCTGCCGGCGGCCG
GCCGGTGGCTCGGAGTGAAGCCAACTGCTCCAACTCTGCGGATGGATCACGCGAGCACGACGCTAGCTAGGTTTTGTGTA
TATAGCTTCCACAGGTGCTGG-------ACGTGAGCATCAATGTTCGAACACTGTTCCGTTATTCCTAATAAAGTATAAT
GTACTAAACTACTCAGTGAT---------TTTTTGCCAGGTGTACGATATTATTTCAGGGCCCTCTTTGAATTTCCACAA
ATTTTGGACGATC----TAATCTTTTGGAATTTTTCCTATGTTTATTGTTTGATTTGCAAGTTAATCT------------
---TCCCCAAGAAGTTCATT---GCACTACATTTAGAGAAGAAGAAAAATCCACTCAAACATCTTGCAAAGAATTCTTTT
ACTTTTCCATTGCTTAATCAAACACGCTTTGGTACAAAACAAACTAGAGGCTAACGTGCGCTGCCGCACTGTTCTTCACT
CACGGGAAGGGGATAATTACATAATTGATTGACTCTTTCTTCCAAACAAGTTATTGCAGTCGGTTGCATCATTTTGGTTT
TAGTTATGC-------------------------TATGGCGGTGTTTTTCCTCATTAATTTGTATATCGTGTTGGGCTGT
TGTTGGAGATGAATTTTTC-AAGCCTAGAAGAAGCAGTATTTGTTTAGAGAAGAGTTAACTTGTTCGGTGCATGTTGTAA
TGTCCTTGCATGTTTCTGCTTCCGAGTCGGCCGGTGGTGATTATCGTGAGCCAGTT------------------------
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>chr5A_778
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------------------------------------------------------AAAAA--------AAGAAACTTGCCA
TGGTTTACACGTTGGGACAGATCTCTTGATACAAGTCCATTACGGATACGACAGAGGAGATGAAGTACAGGAGCAGGTCT
CGGAGATTAAACGGGATACAAGCTAGTGCTTGCCTTATATTGTCTAACAATTAGATCCCGTCGAGCAGATTTTCCGAGGG
TTCC-GATCGACCGCAGCGGATTGCATCGAGACATCGACTTCGACGAACACACTTCCTCGCGACCAGAGATGCGCTCCGA
CGAGCACACGTTCGGCA---------------------------------------------CCGACGGCGTGGAGCTGC
AGTTCTTTCACGGGCACGACGTCGACGAGGACGAGGACGGCAGCACCATGTTCGCGGACGAGGAAGCCTCGGCAGAGTCA
TCATCGGCGACGGCTCTGGACGCGGCGAAGCGGGCGGCGGTGGGAGTGGGCGCGCGGGTGCTCTTCTACCCGAAGATGGC
CTACAAGCTGGTGGCCGGCCGGCCTGCTCGGGGTAAAGCCTCGGAGGAGCCGTCGTCATCGTC---------GGCGACGA
CTCTAGACGCGGCGAAGCACGCGGCGGTGGGCATGGGCGCGCGGGCGCTCTTCTACCCGACGCTCGCCTACAGCCTGGCC
CGGTACCGCCTCTCAT---CCGAATTCCACTGGTGGAACCTCATCGAAGGCACCCACATCTACCTCGGCGCCGTCCCGTT
CCCGAGCGACGTGCCGCGCCTGCACGACCTGGGCGTCCGCGACGTGGTGACCCTCACCGAGCCCTACGAGCGGCTGGTGC
CCAAGTCGCTGTACATTAAACACAAGATGGAGAACCTGGTGCTGCCAACCACTGACTACCTCTACGCGCCGTCCAAGGAC
GACCTCTGCCGTGCCGCGGCGTTCATCCACAGCAGCGGGGAGCGAGGGAGAAAGACGTACGTGCACTGCAAGGCCGGGCG
CGCGCGCAGCGCCACGGTGGTTATGTGCTACCTGGTGCGGTACAAGGGGATGACGGCGAAGGAGGCGTACGATCACGTGC
GGTGGTGCCGGCCCAGGGTGTCGCTGGCTCCGGCGCAGTGGCAGGCGGTCCAGGACTTCGAGGACTTCTACCGGCGGCCG
GCCGGTGGCTCGGAGTGAAGCCAACCGCTCCAACTCTGCGGATGGATCATCCGAGCGCGACGCTAGGTTTTGTGTATATA
TATAGCTTTGTAGCCGGGTACTGGACGTACGTGAGTATCAATGTTCGAACACTGTTCCGTTAATTCTAATAAGTACT---
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----------SS-
S---S--S-S-----------S----SS-----S----S---S-S----S-SS-----------S---------------
----------------S---S----------S---------------------------SSSSSSSS-------------
---------------------------------------------------------------------S----------
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S-S-S---------------------------S-----------------------------------------------
-----S-S-SS--------------------------------------------------S---S--------------
-----------------S---------------S--------------------S--------------S----------
--------------------S-S---------------------------------------------------------
----------------------S------S-----------------------------------------S--------
----------S--------S------------------------------------------------------------
---S-----------SSSS---S----S-S------S--SSS---SSS-S---------S-----------S--------
-----------------------S-------------SS---------------------------------------SS
S-SS-SS--------SSSSS---SSS--------------------S---------------------------------
-----------S----------------------SS-S--SSS-S---SSS--S-----------S--------------
-------------------------------------------------------S-----S------------------
---S-------S--------------------------------------------------------------------
------S----------------------------------S--------------S-----------------------
---------------------------------------------------------------------SS---------
--------------S--SS-SSSSSSSSS---------S------------------S----SSS------------S--
-SSS---------SSSS--------------------------S------SSS--SS--SS--S--SSSSSSSSSSSSSS
SSS-----------------SSS--------------S--S--------------------------------S-S----
S-----------S----------------------------------------S-----S--------------------
------------------------------S--------------SS----------S------S-----S---------
--SS----SSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSSS-------------S-------S----
-----------------SSS-------------S-------------------------------SS-------------
---S------------SS----S-S---S---S---S-------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_515
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---------------CTTGCCGTACACATGCATGG---------------------------------------------
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>reverse_1463
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----------------------GCTTCAAGTGGTGGCACAAG--------------------------------------
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>forward_961
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-------------------------------------------------------------GGAGCAGATTTTCCGAGGG
G-------------------------------------------------------------------------------
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>reverse_2736
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---------------CGAGTGGAAGTGAGCCAGTT---------------------------------------------
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