>input_sequence_67287
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-----------------------------------------ATGAACAGGGGCGTGCCGCCGGCGT---GGGGCGAGATG
GAGACGGACTGCCTGGTGCACGTCTTCCGCCGGCTGGCGCTGGAGGACGTGGCCGCCGCGGCGCCGCTCGTGTGCCGCGG
CTGGCGCCGCGCGGCCGCGGACCCGTCCCTCTGGCGCGCGCTCGACCTGCGCCACGACCACGTCGCGCGCTTCATGCCCT
GGGGCCCCCTCGCCGCCGCCTTCGCGCGCCGCTACGGCGTCGCCCGCTTCGCCTTCGCGGGGTTCCTCACGCTCTGCCTC
GCCCGCGCGGCGGGCTCCGCGTCCGACCTCGCGCTCCCGCCGCTCCTCTCCTCGCCGGCCGCCGAGCTCGACCGCGTCGC
CGCCGGCTGCCCGAGGCTGCGCCGGCTCGCGCTCCCGCCGCTGCTCTCCGCCGCCGACGAGGCGCGCCTGCCGGAGCTCG
TCCCGCGGTGGCCCCTCCTCCAGCGCCTGGAGCTCGAGTCCAAGCCGTCGTCCTTCCCGGCCGTCGCCGCGCAGCTCGCG
CTGCACTGCCCGGACCTCTCCGGCCTCAAGACCTCCGGGGCCATCAAGCCGGAGGACGCCGCGGCCATGGTGGCCTCGCT
GCCCAGGCTCCGGTCGCTGTGCCTCGACTCGTCCTACCTGCCCAAGCAGGAGCTGCTCGCCATTCTCGCCGGCTGCAGTC
AGCTCCAGGAATTCAGCGCCAGGAACTGTGTCGGGTTCAACGAGAAGGACGAGGAGGTGGTCCGACGAGGCGCCAGGATC
GAGAGGTTCGAGATCGGAGGGTCCAGATTCGT------------CGA------------CGAGATGATGACCGACGACGA
GTTCTGCGGCTCTTCCTACGTCGACGTCATGTGA----------------------------------------------
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>chr5B_1_TraesCS5B01G380300
ATTGTAATTCTTCAAACACCCTATAA-AATCCTTTGAATCAAAGAGGCCCTTAGTGTTTGATATGTTCTTGACAATTTTC
ATGCAAAAAGGAATGGTTGCACTTCGTCAAGGAAAAAAAAGGCAAAGTCGATGCTCTACAAATGCCAAAAACAGGACCCA
ACTTGTTTTTTTCACAGGTCATAATTCTAAACTTTTAACCACAAAAAATTATGCATGTCATTTGAATATGGACGTTTACG
TG------------------------------------------------------------------------------
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-----------------------TCTAACTTTTTTTCGTATTCTTTTGACATTCAGAAAAGTATTTTGGCGCGCATGAGA
TATGCTCCCTAGAGCCAAATTTAATATCTGGAAAATATGTGGATTTCTCGTAATAACTAAGGGGCGATCAAGAAAGATAC
ATCTTCTCCTATTCACACATTTTGTAGTTTAATGGAGTCACCGTATAGTTTAGGAGCACGCAAAACTAACCGTTAGAGAT
AACATTCAAACATAGTTGTTTTTGTAATGTATTTTCATTATCGTCTCTGGCTGCCTTTATCGACCAGTGTAGGCGGCACC
CTTAATTTTTTTTAATGTTGCACCCTTACATTTTTTTTTACTTAACACTAGTGGTAGAGCTACGGGATAGGCGGATAGGT
CGTGCCTTCGTTGCTTGTTCCTCGCC------GCAGCCGAAGGCGCGTTCAACGACCATGGACCATGGTTAATTAAACAA
AAAAACAATTAGGGAAAAGGG--GTAAAGCTTGTCTCGTAGCACGTGCGCTAGCCAACCTT------TGGAACCAAACAC
GCTGGCGGAACGGAAGCTCTCACACTCCCTTTATAAAAGACCTCCTCTTTCCATCCA--------TCAATCTCAAAT---
--------CTCAGGCCTAATTACACGACTTGGTA-----TTAAACACCACCCGAGCCATCAACCTCCTTCGCTCACATCG
CACCAAACCAAACCCCGCCGTCCCTCCAGGACCGA---------------------GGGAAAACGCAACCAGGAGCTCGG
CCATGGACACTACGACGCGGGACGGCGAGCAGCGCACGGGCATGAACAGGGGCGTGCCGCCGGCGT---GGGGCGAGATG
GAGACGGACTGCCTGGTGCACGTCTTCCGCCGGCTGGCGCTGGAGGACGTGGCCGCCGCGGCGCCGCTCGTGTGCCGCGG
CTGGCGCCGCGCGGCCGCGGACCCGTCCCTCTGGCGCGCGCTCGACCTGCGCCACGACCACGTCGCGCGCTTCATGCCCT
GGGGCCCCCTCGCCGCCGCCTTCGCGCGCCGCTACGGCGTCGCCCGCTTCGCCTTCGCGGGGTTCCTCACGCTCTGCCTC
GCCCGCGCGGCGGGCTCCGCGTCCGACCTCGCGCTCCCGCCGCTCCTCTCCTCGCCGGCCGCCGAGCTCGACCGCGTCGC
CGCCGGCTGCCCGAGGCTGCGCCGGCTCGCGCTCCCGCCGCTGCTCTCCGCCGCCGACGAGGCGCGCCTGCCGGAGCTCG
TCCCGCGGTGGCCCCTCCTCCAGCGCCTGGAGCTCGAGTCCAAGCCGTCGTCCTTCCCGGCCGTCGCCGCGCAGCTCGCG
CTGCACTGCCCGGACCTCTCCGGCCTCAAGACCTCCGGGGCCATCAAGCCGGAGGACGCCGCGGCCATGGTGGCCTCGCT
GCCCAGGCTCCGGTCGCTGTGCCTCGACTCGTCCTACCTGCCCAAGCAGGAGCTGCTCGCCATTCTCGCCGGCTGCAGTC
AGCTCCAGGAATTCAGCGCCAGGAACTGTGTCGGGTTCAACGAGAAGGACGAGGAGGTGGTCCGACGAGGCGCCAGGATC
GAGAGGTTCGAGATCGGAGGGTCCAGATTCGT------------CGA------------CGAGATGATGACCGACGACGA
GTTCTGCGGCTCTTCCTACGTCGACGTCATGTGATCTCCTCTTTCAAGGCCTGATTGATTTAGTCTCATCTTCTTTTTTG
CGGGGATTTAGTCTCATCTTGGTGTACCCGCCGTGCACGCGTAGCACAAAACTTGATGCGTATTGGAAACACTT------
-----------------GCTGTTTTATTTGAAGAGAATAATGACGCATTCGATTGCGATCACTGTGTGTG---GATTGTC
GTGAGTGATGGGTCTACGTTTAGGAAGGAATTTACGCACGTGTGTACATTTGTTTGTCTCGCTACGTAGTGGATACTTCC
TCTGTTCACAAATATAAGAGCAACTCCAATGAGCCGACCCAAACGGACACATATTTTGTCCGCTTTTTGTTCGTTTGGGT
CGGCCGTCCGTCTAGCGGATATGAGGCGAACGCACGCGGACAGTGACTGCTCCCAACGCACAGACGCAAAAAGCGGACAG
GCGCACAGCAGCACCATGGCAAGCAACTCCTTTGCAGCCACCCCATCTCCACTTCCTCGGCGGTGCTGGCACCGGTGCCG
GCGGCAGGAACCTCCTCGCGTCACTCCTCTA---CTCCTCGCCGGCAGGCACCTCTGCTCTCAGTCGCGTCGCCCCTCCC
CTCCTTCTCGCCGACGGGCACCTCCTCGTGCCGCCCCTCTGCTCCTCGTCGTGG--------TGCCCCTCCGCTCCTCCT
CCAGCTGCATCGCCCCTCCACTCCTCCCCGCCGGCCAACACCCCCTCGCGCCCTTCGACCCC-GTCACGCCCCTTCCGGA
TCAAGGGCGCCG------------------------------------------------------------CCGCGCAG
GCCGGGGCTCTGGAGGCCCCCCGCCAAGTGCTTCTTCCTTTGGATCGGTGGCGGGCACCTCTCGCGTCGCCCCTCCGCTC
CTCCTCGCCGGCGGGCACCCCATCGGGCCCTCCGCCCCCCGTCGCGCCGCCCCTACGCCACCCTCGTGCCGCCGCAAGAT
CTTGTCGGCGCTGAAGTCGGGGGTTCGCTCTGTCGCGGGTGTAACGCCTCGGATTCGATGCGTCAGGTGTCTGCCAGTTA
TTCGTCGGTGTT
>chr5D_1
ATTTTAATCCTTCATATATCCTATAAAAATCCTTTGAATCAAAGAGGCCCTTAGTGTTTGATGTGTTCTTGACAATTTCC
ATGCAAAAAGGAATGGTTGCACTTCGTAA---AAAAAAAAGACGAAGTCGGTGCTCTACAAATGTCAAAATTTGGACTCC
ACCTCCCCCCACCACCGTTGCTGGCCGCCGCCCCGGCCATCCATCTAAGCCCCACCGCACCAATGGAGAACTTCGGCGAT
CATCTGCAACCACCCCCACCTCCAAGATTGATAATGGGGCTGTTACTTCACTTTAAGATAGATATTGGGGCTAGTTATTC
TCTGGCGAGGTCTGGCCAAGAGGGAAGGAAGAAGAAGAAGGAAGGAAGAAGGGAAAAAGTGATTGACTCGAGAAGGAATT
TCAGGCACCTGAGAAATAGCAAATCTGATTTTTTTTTTAATTCTTTCAGCATTCGTAAAAGTATTTTGGCGCGCATGATA
TATGTTCCCCCACA------------------------------------------------------------------
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------TTTTTTTACTGTTCCACCCTTAC--TTTTTTTTACTTGACACTAGTGCTAGAGCTACGGGG--------TAGGT
CGTGCCTTCGTTGCTTGTTCCTCGCCGCAGCCGCAGCCGAAGGCGCGTTCAACGACCATGGACCATGGTTAAGC------
--AAAAAATCAGGAAAAGGGGTAGTAAAGCTTGTCGCGTAGCACGTGCGCTAGCTAACCTCTGCAAGTGGAACCAAACAC
GCTGGCGGAACGGAAGCTCTCACACTCCCTTTATAAAAGACCTCCTCTTTCCATCAA--------TCCCAAATCTCAGCT
CAGCTCAGCTCAGGCCTGATTGCACGAC-----------TTAAACACCGCCCGAGCCATCAATCTCATTCGCTCACACCG
CACCAAACCAAACCCGCCGTCTCCGGCCAGGCA------------------------GGAAAACGCAAGAGCTCGGCCGG
CCATGGACGCCACGCGGGACGGTGGCAT------------------CAGGAGCGCGCCGCCGGCGT---GGGGCGAGATG
GAGACGGACTGCCTGGTGCACGTCTTCCGCAGGCTGGCGCTGGAGGACGCGGCCGCCGCGGCGCCGCTCGTGTGCCGCGG
CTGGCGCCGCGCCGCGGCGGACCCGTCCCTGTGGCGCGCTCTCGATCTGCGCCACGACCACGTCGCGCGCTTCATGCCCT
GGGGCCCCCTCGCCGCCGCCTTCGCGCGCCGCTACGGCGTCGCTCGCTTCGCCTTCGCCGGGTTCCTCACGCTCTGCCTC
GCCCGCGCGGCGGGTTCCGTGTCCGACCTCGCGCTCCCGCCGCTCCTCTCCTCGCCGGCGGCCGAGCTCGACCGCGTCGC
CGCCTGCTGCCCGAGGCTGCGCCGGCTCGCGCTCCCGCCGCTGCTCTCCGCCGCCGACGAGGCGCGCCTGCCGGAGCTCG
TCCCGCGGTGGCCCCTCCTCCAGCGCCTCGAGCTCGAGTCCAAGCCGTCGTCCTTCCCGGCCGTCGCCGCGCAGCTCGCG
CTGCACTGCCCGGACCTCTCCGGCCTCAAGACCTCCGGGGCCATCAAGCCGGAGGACGCCGCGGCCATGGCGGCCTCGCT
GCCCAGGCTCCGGTCGCTGTGCCTCGACTCGTCCTACCTGCCCAAGCAGGAGCTGCTCGCCATTCTCGCCGGCTGCAGTC
AGCTCCAGGAATTCAGCGCCAGGAACTGTGTCGGGTTCAACGAGAAGGACGAGGAGGTGGTCCGACGAGGCGCCAGGATC
GAGCGGTTCGAGATCGGAGGGTCCAGGTTCGT------------CGACGTGCTTGACGACGAGATGATGGCCGACGACGA
GTTCTGCGGCTCTTCCTACGTCGACGTCATGTGATCTCCTCTTTCAAGGCCTGATTGATG--------------------
--------TAGTCTCATCTTGGTGTACCCGCCGTGTACGCGTAGCACAAAACTTGATGCGTCTTTGAAACACTTGCTGCT
TTTTTTTGCCGGCACTTGCTGTTTTATTTGAAGAGAATAATGACGTATTCGATTGCGGTCATTTGTGTGTGTTGATTGTC
GTGAGCGATGGGTCTTCGTTTAGGAAGGAATTT----ACGTGTGTACATTTGTTT-------------------------
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>chr5A_753
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--------------------------------------------------------------------GGAACCAAACAC
GCTGGCGGAACGGAAGCCCTCACACCCCCTTTATAAAAGACCTCCTCTTTCCATTCCATCAACCCTCCCAAAT-------
---CTCAGCTCACGCCTAATCGCACGACTTAGTAGAGTATTAAACGCCGCCCGAGCCATCAATCTCTTTCGCTCGCATCG
CG----------CCCGCCGTCTCCGGCCAGCCATCCGGAGGGGAACCGGAGGTGGCGGTAAAACGCAGGAGCTCGGCCGG
CCATGGAAGCCACGCGGGACGGTGGCAT------------------CAGGGGCGCGCCGCGGGCGTTGTGGGGCGAGATG
GAGACGGACTGCCTGGTGCACGTCTTCCGCCGGCTCGCGCTCGAGGACGTGGCCGCCGCGGCGCCGCTCGTGTGCCGCGG
CTGGCGCCGCGCCGCGGCCGACCCGTCCCTGTGGCGCGCGCTCGACCTGCGCCACGACCACGTCGCGCGCTTCATGCCCT
GGGGCCCCCTCGCCGCCGCCTTCGCGCGCCGCTACGGCGTCTCCCGCTTCGCCTTCGCGGGCTTCCTCACGCTCTGCCTC
TCCCGCGCGGCGGGCTCCTTGTCCGACCTCGCGCTCCCGCCGCTCCTCTCCTCGCCGGCCGCCGAGCTCGACCGCGTCGC
CGCAGGCTGCCCGAGGCTGCGCCGGCTCGCGCTCCCGCCGCTGCTCTCCGCCGCCGACGAGGCCCGCCTGCCGGAGCTCG
TCCCGCGGTGGCCCCTCCTCCAGCGCCTGGAGCTCGAGTCCAAGCCGTCGTCCTTCCCGGCCGTCGCCGCGCAGCTCGCG
CTGCACTGCCCGGACCTCTCCTCCCTCAAGACCTCCGGGGCCATCAAACCGGAGGACGCCGCGGCCATGCCGGCCTCGCT
GCCCAGGCTCCGGTCGCTGTGCCTCGACTCGTCCTACCTGCCCAAGCAGGAGCTGCTCGCCATTCTCGCCGGCTGCACGC
AGCTGGAGGAATTCAGCGCCAGGAACTGTGTCGGGTTCAACGAGAAGGACGAGGAGGTGGTCCGACGGGGCGCCAGGATC
GAGCGGTTCGAGATCGGAGGGTCCAGGTTCGTCGACGTGCTTGACGA------------CGAGATGATGGCCGACGACGA
GTTCTGCGGCTCTTCCTACGTCGACGTCATGTGATCTCCTCTTTCAAGACCTCGTTGATG--------------------
--------CAGTCTCATCTT------------------------------------------------------------
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>chr1A_2121
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--------------TAAGAGCAACTCCAATGAGGCGACCCAAACAGACATGGATTTTGTCCGTCTTTTGTCCGTTTGGGT
CACCCGTCCGCCTAGCGGATATGACACGGACGAC----------GACTGCTCCCAACGCACAGACGCAAAAACGGACATG
CACCTCTGCTCTCA------------------------------------------------------------------
-------------------GTCGCTCCTCTACTCCTCCTCGCTGGCAGACACCTCTGCTCCCAGTCGCGTCGCCCTTCCT
-TCCTTCTCGCCGGCGGGCACCTCCCCGTGACGCCCCTCTGCTCCTCGTCGTGG--------TGCCCCACTGCT-----T
CCAGCCGCG------------------------------------TCGCTCCCTCCGACCCCTGTCGCGCCGCCGCTGCT
TCCAGCCGCGTCGCTCCCTACCCCCCCTGTGCCGCCGCAGGATCTTGCCAGTGCTGAAGTCGAGAGCTCACTCCGCGCAG
GCCGGGGCTCTGGAGGTCCCCCGCCGAGCGCTTCTTCCTCTGGATCGGCGGCGGGCACCTCTCGCGTCGCCCCTCCGCTC
CTCCTCGCCGGCGGGCACCCCATCGCGCCCTCCGCCCCCCGTCGCGCCGGCCCTATGCTA-----------CCGCAGGAT
CTTGCCAGCGCTGAAGTCGGGGGCTCGCTCCGCCGCGGG-----------------------------------------
------------
>chr2D_2123
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----------------AGAGCAACT-CAATGGGGCGGCCCAAAAGGACACAGATTTTGTTCGTTTTTTGTCCGTTTGGGT
CACCCGTCCGCCTAGCGGATATGAGGCGAACGCATGCGGACGGTGACTGCTCCCAACGCATAGACGCAAA-AGCGGACAG
GCGCACAGCAGCACCATGGCAAGAAACTCCTCTACAGCCGCCCCATCTCCTCTTCCTCGGCGGTGCTGGCGCCGGTGCCG
---GCGGGAACCTCCTCGCGTCGCTCCTCCGCTCCTCCTCGCCGGCAGGCACCTCTGCTCCCAGTCGCGTCGCCCCTCCC
CTCCTTCTCGCCGGCGGGCACCTCCTCGTGCC----------------------------------CCACTGCT-----T
CCAGCCGCGTGT-CCCTCCGCTCCTCCCCGCCGGCAGGCACCCCCTCGCGCCCTCCGACCCCAGTCGAGCCCCTTCGGGA
TCAAGGGCGTCG------------------------------------------------------------CCGCGCAG
GCCGGGGCTCTGGAGGCCCCCCGTCGAGCGCTTCTTCCTCTGGATCGGCGGTGGGCACCTCTCGCGTCGCCCCTCCGCTC
CTCCTCGCCGGCGGGCACCCCATCGCGCCCTCTGCCCCCAGTCGCGCCGTCCCTACGCCGCCCTCGCGCCGCCGCAGGAT
CTTGCCGCCGCT--------------------------------------------------------------------
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>chr1D_2134
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---------------------------AATGGGGCGACTTAAACGGACACGGATTTTGTCCGCTTTTTATCCGTTTGGGT
CGCCCGTCCACCTAGCGGATATGTGGCGAACGCACGCGGACGGTGACTGCTCCCAACACACAGACGCAAA-AGCGGACAG
GCGCACAGCAGCACCAGGGCAAGGAACTCCTCTGCAGCAGCCCCATCTCCTCTTCCTCGGCGGTGCTGGCGCCGGTGCCG
---GCGGGAACCTCCTCGCATCCCTCCTCTACTCTTCCTCGCCGGCAGGCACCTCTGCTCCCAGTCGCGTCGCCC-TCCC
CTCCTTCTCGCCGGCGGGCACCTCCTCGTGCCGCCCCTCTGCTCCTCCTCATGCCGCCCCTCTGCCCCACTGCT-----T
CCAGCCGCGACGCCCCTCCGCTCCTCCCCGCCGGCGGGCACCCC-TCGCGCCCTCCGACCCCCGTCGCGCCCCTTCCGGA
TCAAGGGCGCCG------------------------------------------------------------CCGTGCAG
GCCGGGGCTCTGGAGGTCACCCGCCGAGCGCTTCTTCCTCTGGATCGGCGGAGGGCACCTCTTGCGTCGCCCCTCCGCTC
CTCGT---CGGCGGGGACCCCATCGCGCCCTCCGCCCC--GTCGCGCCGCCACTACTCCGCCCTCG--------------
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>SNPs
---S----S-----S-S-S-------------------------------------------S---------------S-
---------------------------S-SSS---------S-S------S-------------S-----SSS----S-S
--S-SSSSSSSS---S-S-SS-SSSSSSSSS-SSSSSSSSS--SSS--SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
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--------------------------S-S-------SSS-------SSS-----SS----------------------S-
----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S----S---------SS------------S---------S------------SSSSSSSSS-----
------------------------------------------------------------------------SSSSSSSS
SS---S---S---S---S-----------------S------------------S-----S-------------------
-------------------------------------------------------------------SSSSSSSSSS---
---------------------S--------S-----------------S-------------S---S-------------
---------------SS-SSSS--SS-SS-S-SSS---------------------------------SSSSSS-SS---
--------S-S---SS-SSS-SS---SSSSSSSSSSSSSSSSSSSS--------S-------------------------
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------------S--S--------------S-------------------------------------------------
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-------------------S------------------------------------------------------------
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----------------------------------------------------------------------S---------
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---S----------------------S------------------------------------------S----------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------------------------S-------------------------S--S---------------
---------------------------------------------S-----------S---S-SSSSSSS----------
-----S---------S-----------------SSSS------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------------S-----------------S------------------S---------
--S-------S------------------------------S--------------------------------------
-----------------------S-------S-------S----------S-------------------S---------
SSS--S----------------S-------------------------------------S-------------------
-------------S------------------------------------------------------S-S---SSSSS-
-----S--S----------S---------------SSS----------------S-----------S-------------
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-------------------------S--S----------S--------S-------------------------------
-------------------------S----------------------------------------S---------S---
----S------------------S------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_490
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----------------------------------------------------------------------GCGCATGAGA
TATGCTCCCT----------------------------------------------------------------------
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>reverse_2004
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---AGGTTCGAGATCGGAGGGTC---------------------------------------------------------
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>forward_726
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------------------------------------------------------------------GTGTAGGCGGCACC
CTTAAT--------------------------------------------------------------------------
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>reverse_2600
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---------------------------------------ACCCCATCTCCACTTCCTCG---------------------
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