>input_sequence_67283
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----ATGCAGGAGCCCGGGCGGCGGCCGTTCGCCGGCGCCGTCGACCTGCGCCGGCCCAAGGGCTACCCGGCGCCGTCGG
CGACCGCGCAGGCGGAGGTGGGGGCGGCGGCGGCGGAGGA---GGGGGAGGCGCACGGCGACCCCTGCCCGCGCTGCGAG
TCCAGGGACACCAAGTTCTGCTACTACAACAACTACAACACCTCCCAGCCGCGCCACTACTGCAAGTCCTGCCGCCGCTA
CTGGACCAAGGGCGGCACCCTCCGCAACGTCCCCGTCGGCGGCGGCTCGCGCAAGAGCTCCTCCTCGTCGTCGTCCTCGT
CCTCCAGCCCCAAGCGCGCCAAGAACTCCAAGCGCCGCCGCGTCGCGCCGGCCGCGCCCCCGGCGCCCGAGGCTGAGCCC
GGCGCCGACGCCT------CAGCCGCCGTCGCCGCGACGACGAAGGAGGCCGCGGCCAC---CGAGGACGTCACAGCAGC
TGAGGATCCCGCCGCAGCCCCTACGGCGGACGGGTGTTTCGCTTTCACAGCCGGCGAGCCCGACGCGCCACCCGCGAAGG
AAGGGTGCTTCACTCTCACGGCCGGCGAGCCTGACGCGCCACCCGCGGCGGACGGAGACGGGGGCTTCGCTTTCACGGCC
GGCGAGCCCGACGTGCCACCCGCGGCTGACAGAAACGGGGGCCTGGCTTTCACCGATCACCCGTCGGTGGCGCTCGGGCT
CGGCGTGGCGGACGAGGCCGGCGGGAAGGAGCTGGCGGACCCGAGCCCGTTCGAGTGGCCGTCGGGCTGCGACCTGGGGT
CCTACTGGGTGGCCGGCGTGTTCGCCGACACCGATCCGGCGCTGTTCCTCAGCCCGCCGTGA------------------
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>chr5A_1_TraesCS5A01G251800
GAGCAACGGCGGCACCATGGCGCGAACAGAGATTCGTGGCACCATCGCGCCGGTGCGTCACGCCCACGCGCGCCTCCGAG
CCAGCGGGCCGCGCACGGCACGGCGCACCGCCGTACCGCCCCTCCCATCCCGGCGCTCTGCGCACGCTGCGGCTGGCTGC
CTCGTCCCGTGCCGTGCCCGGAGGCCGGAGCAACCGGCGCGCACGCACCATATCGGTTCGGTCCGCCGCCGGGCGCGAGG
GCCAGACTGGTCGCGGGTGCCCGTCACCGGCCCGCG-----CACCCGGAGCAACGGGCTCGACGCGTTCCTGCCGGGCCC
CGG------CCCGATCGTGCGC--------------------------GGGCATTTCGCTTGCGCTTATCGCCTCGGGCT
CGGGGCGCCCTCCTGGGCCTGGCTGGTGGCTGCCACGGTGAGGTTCCTTTACGTGCCGAGGGGAGGGAGACCCGTCGCTG
TGCGCAACCACCGCACGACCGCTGCTGGTCCACGAGCACGAGGTGGGCTGCACGAGCGCCTGGGGCCCGGCCGGCGACCG
GGGCGCTCCGTCGGAGGGGGATGCGCACGACACGGCACCGCGCGCGTCGACCCGTCTCGTCTCATCACGGGAGCGGGTAA
AAAACCA----GACCACTCGGGTGGCGGCTAGTAGCTCGTGGTGGTATA-CTACGTCGTACTAGGCCCGTACGCCCGCGC
GGTGGTTGCCGCCGGGCGCTGTGCCGCGGGTCAAACAAAGGTGGCGGTGGCGCCCCCGCCACACCGCCCCAACAGTCGGC
GCCACCTCACGCACGCATGCGGCCGCACCGTCAAATGCCGCCGCACCGTAAAACACTGCTCCACTTGAGATGGACGGCTG
GACCTGCTCCACCGGCCCGCCCCCTTAAGACCCACCCCGCCGCACCGCCCACGCACGTTCGCGCTCGCTAGCTACACAAA
CCAAACGCCTCGTCCGTCCGTTCCTTTCCTTCCCTCCACCGCCGACCGATCGGAGCCAGCTTTGCTCT--CGTTGGTAGG
TGGCATGCAGGAGCCCGGGCGGCGGCCGTTCGCCGGCGCCGTCGACCTGCGCCGGCCCAAGGGCTACCCGGCGCCGTCGG
CGACCGCGCAGGCGGAGGTGGGGGCGGCGGCGGCGGAGGA---GGGGGAGGCGCACGGCGACCCCTGCCCGCGCTGCGAG
TCCAGGGACACCAAGTTCTGCTACTACAACAACTACAACACCTCCCAGCCGCGCCACTACTGCAAGTCCTGCCGCCGCTA
CTGGACCAAGGGCGGCACCCTCCGCAACGTCCCCGTCGGCGGCGGCTCGCGCAAGAGCTCCTCCTCGTCGTCGTCCTCGT
CCTCCAGCCCCAAGCGCGCCAAGAACTCCAAGCGCCGCCGCGTCGCGCCGGCCGCGCCCCCGGCGCCCGAGGCTGAGCCC
GGCGCCGACGCCT------CAGCCGCCGTCGCCGCGACGACGAAGGAGGCCGCGGCCAC---CGAGGACGTCACAGCAGC
TGAGGATCCCGCCGCAGCCCCTACGGCGGACGGGTGTTTCGCTTTCACAGCCGGCGAGCCCGACGCGCCACCCGCGAAGG
AAGGGTGCTTCACTCTCACGGCCGGCGAGCCTGACGCGCCACCCGCGGCGGACGGAGACGGGGGCTTCGCTTTCACGGCC
GGCGAGCCCGACGTGCCACCCGCGGCTGACAGAAACGGGGGCCTGGCTTTCACCGATCACCCGTCGGTGGCGCTCGGGCT
CGGCGTGGCGGACGAGGCCGGCGGGAAGGAGCTGGCGGACCCGAGCCCGTTCGAGTGGCCGTCGGGCTGCGACCTGGGGT
CCTACTGGGTGGCCGGCGTGTTCGCCGACACCGATCCGGCGCTGTTCCTCAGCCCGCCGTGAACCGTGGT----------
-----------TGAGCCGAGCACGGCACGGTCCGAGGAGAGCTGAGCTGAGCTCCCCCAACCTTCTTACTATCAT---CA
TCGTCTGCCCGGATTCCGGCCAGTAGTATTTGGA---AATTTTTATGTCACTACTCACCAGAGGAGTCGATCTAAGAAGC
CGTTTGTCTTAGTGCCTGATCGGAAGGCTAACCTAGAAGGTGAGGTGCCTGTATAAACCAATCAGTACCCGGTCTGCTCA
CGGCGTGTTTCAAGCCCTGAAAAGATTTCCCTTTCGCGATTAGCGAACTACCACTACCACTACCACTCATTATACTACTC
CAGTGCTTGTTTGACTCCTCCCACCACATGCTCTGCTGCTCATGTTAC------GATTTTCACCGTGCTGCTCATGTCGA
TCATGGCTGCTGAGACCTGGATATGTACTTGTAGCTAGGCCGCACTTCTACCTCGCTGGTAGCATTCCCTGAGCGTCG--
--------------------TGAAGAGAGGAGAGCGTGCCGACCACGTA----------------------CAGGCACGG
TGCACTAGAGCACATGGCATGTCCAGATTGCTCATAACTCCGTCGCGTA-------CAGTACAGCGCAGGCATGAACAGA
TTGTTTCCATAACTCCATCATGATCCGG-----AACCAATCGGCGGCGTGGGCGGCGAATCAAGGCGGCATGAATTCGGC
CGCGTCGCGTACCACCGAGGGCAGGCGCAGGCGCCCGCCGGCCACGAATTATTGTCGCCCGCCCGCCCACGAATTATTAG
ATTCGACGAATCGCAGCGGCCGGTACGCAACGCGACGTCGTCGGGGGACGGGCGGGGGATATGTTCGTGTTCGGTTGGAC
GTCGGCGTCGGTCGGCGGACCTTAAATCGATTTCAATTCACGGGCGGGG----CGCGGCAGAGGCCGACAGCTCGCTCGC
TCGCCCGCGATTCCGACGGCGACGGCCCCCGGCCCCGACCGCGACGGGACGGACGCGCGCGCCGCGTCAGGGATGGGCTC
GGCTCGGCGTCACGTGTCGGTCGGCCGGTCGATTC
>chr5B_1
GAGCAATGGCGGCATCATGGTGCGAACGGAGATTCGTGGCACCATCGCGCCAGTGCGTCACGCCCAGGCGCGCCTCCGAG
CCAACGGGCCGCG-ACGGCACGGCGCACCGCCGTACCGTCCCTCCCATCCCGGCGCGCTGCGCACGCTGCGGCTGGCTGC
CTCGTCCCGTGCCGTGCCCAGAGGCCAGAGCAACCAGC----------------------------CGCCGGGCGCGAGG
GCCAGACTGGCCGCGGGTGCACGTCACCGCCCGCCCCCGCCCACCCGGAGCAACGGGCTCGACGCGTTGGTGCCGGGCCC
CGTCCCGGCCCCGATCGTGGGTGCCACTGCTGAGAGGGCGCCGTGAGTGGGCACTTCGCTTGCGCTTATCGCCTCGGGCT
CGGGGCGGCC----------------TGGCTGCCACGGTAAGGTTCCTGTACGTGCCGAGAGGAGGGAGACCCGTCGCTG
TGCGCAACCACTGCACGACCGCTGCTGGTCCG------CGAGGTGGGCTGCACGAGCGCCTGGGACCCGGCCGGCGACCG
GGGCGCTCGG-----------TGCGCACGACACGGCACCGCGCGCGTCGTCTCA-----------------AGGGAGTAA
AAAAACACAACGACGTCTCGGGTGGCGGCTGGT------TCGTGGTACTCCTACGTCGTAT---GCCCGTACGTCCGCGC
GGTAGTTGCCGCCGGGCGCTGTGCCGGGGGTCAAACAAAGGTGGCGGTGGCGCCCCCGCCACACCGCTCCAACAGTCCGC
GCCACCTCACGCA------------CACCGTCAAATGCCGCCACACCGTAAAATGCTGCTCCACTTGAGATGGACGGCTG
GACCTGCTCCACCGACCGGCCCCCTTAAGAGCCACCCCGCCGCACCGCACACGCACGTTCG--------AGCTACACAAA
CCAAACGCCTCGTCCGTCCGTTCCTTTCCCTCCCTCCACCGCCGATCGATCAGGGCCAGCTC-GCTCT--CGTTGGTAGG
TGGCATGCAGGAGCCCGGGCGGCGGCCGTTCGCCGGCGCCGTCGACCTGCGCCGCCCGAAGGGCTACCCGGCGCCGTTGG
C---CGCGCAGGCGCAGGCGGAGGCGGTGGCGGAGCTGGCGACGGGGGAGGCACACGGCGACCCCTGCCCGCGGTGCGAG
TCGCGGGACACCAAGTTCTGCTACTACAACAACTACAACACCTCCCAGCCGCGCCACTACTGCAAGTCCTGCCGCCGCTA
CTGGACCAAGGGCGGCACCCTTCGCAACGTCCCCGTCGGCGGCGGCTCGCGCAAGAGCTCCTCCTCGTCATCGTCGTCGT
CGTCCAGCCCCAAGCGCGCCAAGAACTCCAAGCGCCGCCGCGTCGCGCCGGCCGCGCCCCTGGAGCCCGAGGCTGAGCCC
GGCGCCGACGCCC------CAGCCGCCGTCGCCACGACGACGAAGGAGGCCGCGGCCAC---CGAGGACGTCACAACAGC
TGGCGATACCGCCGCAGCCCCTGCGGCCGACGGGTGTTTCGCTTTCACGGCCGGCGAGCCCGACGCGCCACCCGCGGCGG
ACAGGTGTTTCACTTTCACGTCCGGCGAGCCAGACGCGCCACCCGCGGCGGACGGAGACGGGTGCTTCGCTTTCACGGCC
GGCGAGCCCGACGTGCCGCCCGCGGCGAAGGGAGACGGGGGCCTCGCTTTCACCGATCACCCGTCGGTGGCGCTCGGGCT
CGGCGTGGCGGACGACGCCGGCGGGAAGGAGCTGGCGGACCCGAGCCCGTTCGAGTGGCCGTCGGGCTGCGACCTGGGGT
CCTACTGGGTGGCCGGCGTGTTCGCCGACACCGATCCGGCGCTGTTCCTCAGCCCGCCGTGAACCGTGGTCGTCTCGCAG
AGCTCCACCTGTGAGCTGAGCACGGCACGGTCAGAGCACAGCTCGAGCT-----CCCCAACCTTCTTACTATCAT---C-
--GTCTGGCCGGATTCCGGCTAGTAGTATTTGGA---AATTTTCATGTCACCACTCACCAGAGGGGTCGATCTAAGAAGC
CGTTTGTTGTAGTGCCTGATCGGAAGGCTAACCTAGAAGGTGAGGTGCCTGTATAAAC----CAGTACCCGGTCTGATCA
CGGCGTGTTTCAAGCCCTGAAAAGATTTCCCTTTCGCGATTAGCGAACTACCACTACTACTCAT-----TTATACTACTA
-----CTTGTTTGACTCCTCCCC-----TGCTCTGCTCTCTACATATGGTATGAGATTTTCATCCTGTTGCTCCTG--GA
TCATAGTTGCTGAAACCTGGAAATGTACCTGTAGCTAGCCAG------TACTTCGCTACTAGCATACCTGATGCTTCTT-
-------------GCTCCGATGAAGAGAGGAGAGCGTGCCGACCACGTA----------------------CAGGTACAG
TACAGCACA------GGCATGTCCAGATGGTTCATAACTTCACGTACAGTGAAGGGCAGTACAGCACAGGCATGTCCAGA
TTG-TTCCATAACTTCATCATGATCCGGTCCGGAATCAATCGGCGACGTGAGCGGCGAATCAAGGCGGCATGAATTCGGC
CGCGTCGCGTACCACCGAGGGCGGGCA----------CCGGCCACGAATTATTGT----CGCCCGCCCACGAATTATTAG
ATTCGACGAATCGCAGCAGCCGGAACGCAACGCGACGTCGTCGAGGGACGGGCAGAGGATCGGTTCGTGTTCGGTTGGAC
GTCGGCGTCGGTCGGCGGACCTTAAATCGATTTCAATTCACGGGCGGGAGCGACGCGGCAGAGGCCGACAGCTCGCTCGC
TCGC----GATTCCGACGGCGACGGCCCCCGGCCCCGACCGCGACGGGACGGACGCGCGCGCCGCGTCAGGGATGGGCCG
GGCTCGGCGTCACGTGTCGGTCGGCCCGTCGATTC
>chr5D_1
GAGCAATGGCGGCATCATGGCGCGAACAGAGATTCGTGGCACCATCGCGTCGGTGCGTCACGCCCACGCGCGCCTCGGAG
CCGACGGGCCGCGCACGGCACGGCGCACCGCCGTACCGTCCCTCCCATCCCGCCGCGCTGCGCACGCTGGGGCTGGCTGC
CTCGTCCCGTGCCGACGTGCCGTGCCAGGAGG------------------------------------------------
--------------------------------------------CCGGAGCAACGGGCTCGACGCGCTCCTGCCAGGCCC
------GGCCCCGATCGTGGGTGCCACTGCTGAGACGGCGCCGTGAGTGGGAATTTCGCTTGCGCTTATCGCCTCGGGCT
CGGGGCGGCC----------------TGGCTGCCACGGTGAGGTTCCTGTACGTGCCGAGGGGAGGGAGACCCGTCGCTG
TGCGCAACCACCGCACGACCGCTGCTGGTCCACGG------GGTGGGCTGCACGAGCGCCTGGGGCCCGGCCGGCGACCG
GGGCGCCCCGTCGCGAGGGGATGCGCACGACACGCCACCGCGCGCGTCGTCTCA-----------------CGGGAGT-A
AAAAACACAACGACGTCTCGGGTGGCGGCTGGT------TCGTAGTACT-GTACGTCGTAT---GCCCGTACGTCCGCGC
GGTAGTTGCCGCCGGGCGCTGTGCCGGGGGTCAAACAAAGGTGGCGGTGGCGCCCCCGCCACACCGCTCCAACAGTCGGC
GCCACG-CACGCA------------CACCGTCAAATGCAGCCGCACCGTAAAATGCTGCTCCACTTGAGATGGACGGCTG
GACCTGCTCCACCGACCGGCCCCCTTAAGAGCCACCCCGCCGCACCGCACACGCACGTTCG--------AGCTACGCAAA
CCAAACGCCTCGTCCGTCCGTTCCTTTCCCTCCCTCCACCGCCGATCGATCAGGGCCAGCTC-GCTCTCTCGTTGGTTGG
TGGCATGCAGGAGCCCGGGCGGCGGCCGTTCGCCGGCGCCGTCGACCTGCGCCGGCCCAAGGGCTACCCGGCGCCGTCGG
CGACCCCGCAGCCGCAGGCGGAGGCGGGGGC------------GGGGGATGCGCACGGTGACCCCTGCCCGCGGTGCGAG
TCGCGGGACACCAAGTTCTGCTACTACAACAACTACAACACCTCCCAGCCGCGCCACTACTGCAAGTCCTGCCGCCGCTA
CTGGACCAAGGGCGGCACCCTCCGCAACGTCCCCGTCGGCGGCGGCTCGCGCAAGAGCTCCTCCTCGTCGTCGTCGTCTT
CGTCCAGCCCCAAGCGCGCCAAGAACTCCAAGCGCCGCCGCGTCGCGCCGGCCGCGCCCCCGGAGCCCGAGGCCGAGCAC
GACGCCGACGCCTCAGCCGCAGCCGCCGTCGCCGCGAGGACGAAGGAGGCCGCGGCCACCACCGAGGACGTGACAACAGC
TGACGATCCCGCCGCAGCCCCTGCGGCCGACGGGTGTTTCGCTTTCACGGCCGGCGAGCCCGACGCGCCACCTGCGGCGG
AAGGGTGTTTCACTTTCTTGGCCAGCGAGCTCGACGCGCCACCCGCGGCGGAGGGAGACAGGGGTTTGGCTTTCACGGCC
GCCGAGCCGGACGCGCCACCCGCGGCGGACGGAGACGGGGGCCTCGCTTTCACCGATCACCCGTCGGTGGCGCTCGGGCT
CGGCGTGGCGGACGACGCCGGCGGGAAGGAGCTGGCGGACCCGAGCCCGTTCGAGTGGCCGTCGGGCTGCGACCTGGGGT
CCTACTGGGTGGCCGGCGTGTTCGCCGACACCGATCCGGCGCTGTTCCTCAGCCCGCCGTGAACCGTGGTCGTCTCGCAG
AGCTCCACCGGTGAGCTGAGCACGGCACGGTCAGAGCACAGCTCGAGCT-----CCCCAACCTTCTTACTATCATCATC-
--GTCTGGCTGGATTCCGGCCAGTAGTATTTGGATGGAATTTTCATTTCACTACTCACCAGAGGGGTCGATCTAAGAAGC
CGTTTGTTTTAGTGCCTGATCGGAAGGCTAACCTAGAAGGTGAGGTGCCTGTATAAA----TCAGTACCAGGTCTGATCA
CGGCGTGTTTCAAGCCCTGAAAAGATTTCCCTTTCGCGATTAGCGAACTACCACTACCACTCAT-----TTATACTACTA
-----CTTGTTTGACTCCTCCCC-----TGCTCTGCTCTCTACATATGGTATGAGATTTTCATCCTGTTGCTCCTG--GA
TCATAGTTGCTGAAACCTGGAAATGTACCTGTAGCTAACCAG------TACGTCGCTGCTAGCATCCCTGAGCGTTCTTG
GCAAATACGGTGCGCTCCGGCGAAGAGAGGAGCGCGTGCCGACCTCGCTCCGTTTAGGTGGAAGCTGCCACCACGTACAG
TACAGCACA------GGCATGTCCAGATTGTTCATAACTTCACGTACAGTGCAGGGCAGTACAGCACAGGCATGTCGAGA
TTG-TTCCATAACTTCATCATGATCCGGTCCGGAATCAATCGGCGACGTGAGCGGCGAATCAAGGCGGCATGAATTCGGC
CGCGTCGCGTACCACCGAGGGCGGGCA----------CCGGCCACGAATTATTGT----CGCCCGCCCACGAATTATTAG
ATTCGACGAATCGCAGCAGCCGGTACGCAACGCGACGTCGTCGAGGGACGGGCAGAGGATCGGTTCGTGTTCGGTTGGAC
GTCGGCGTCGGTCGGCGGACCTTAAATCGATTTCAATTCACGGGCGGGAGCGACGCGGCAGAGGACGACAGCTCGCTCGC
CCGC----GATTCCGACGGCGACGGCCCCCGGCCCCGACCGCGACGGGACGGACGCGCGCGCCGCGTCAGGGATGGGCCG
GGCTCGGCGTCACGTGTCGGTCGGCCGGTCGATTC
>SNPs
------S-------S-----------------------------------------------------------------
---S----------------------------------S-----------------S-----------------------
-------------------S------S--------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------S---------S--------S--SS-S--------------------------------------------
--S----------------S-S----------------------------------------------------------
-------S--SSSSSSSSSSSSSSSS----------------------S-------------------------------
----------------------------------SSSS------------------------------------------
-------------SSS---------------------------------S-S-SSSSSSSSSSSSSSSSSS--S-S----
----S---------SS--------------S--SSSSSS-S------SS-----------SSSS---------S------
---S----------------------S----------------------------------------S------------
-------------SSSSSSSSSSSS----------------------------SS-------------------------
--------------S--S------------S-----------------S------------SSSSSSSS-----------
-----------------------------S---------------S-----S-S-------SS-----------------
--------------------------------------------------------------------------------
--------------S---S--S-----S-----S-SS--S---------------------------------S------
--SS----------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-S-------------------------------------------------------------S----------------
---------------------------------------------------------------------------S----
---S------------------S----S--------------------S---------------------------SS--
-------S------S----------------S------------------------------------------------
--------------------------S---S--S----------S-----------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------S---S-S----SSSSSSSSSSS-------------------------S
SS-----S-----------------------------------S--------------------S---------------
-------S--------------------------------------------------SSS---------------S---
-------------------------------------------------------------SSSSSSSS----------S
SSSSS-----------------SSSSSS---------SSSS-SS-SSS--------------S-S--S-----S--SS--
----S-S------S-------S------S---------S-S-SSSSSS---S------S------S--SSSS--S--S--
---------------------------------------------------------------------------S--S-
-S--SS-S-SSSSSS---------------S--------S-SSSSSSSS----------------S--------SS----
---S----------S--------------------S---------S----S-----------------------------
----------------------S---SSSSSSSSSSS------------------SSSS---------------------
-----------------S-------------------------S---------S-S----SS------------------
------------------------------------------------S-------------------------------
----SSSS----------------------------------------------------------------------SS
-----------------------------------
>forward_628
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------------------------------------------------GACCCGTCTCGTCTCATCAC------------
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>reverse_2677
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------------------------------------GCCGGCCACGAATTATTGTC------------------------
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