>input_sequence_67282
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-------ATGGCGACGACGGTGGACTGGCGCAGCTATAGGCCCGATCTTCCTGCGGCGATGTACCGCATGGTGGACAGCA
GAGACCAGGTAATGCACGCGTTCGCTCCGCCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCATGCCCC
GGCGCGGATCAGAGCGCCGGCCTGCTTCGTGGCGCCACCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCT
CCACCACGTGCGCCGGGCGCCGGGCGCGCCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCGGCGCTCC
CGGTGCGGCCGGCGACCAAGCTGTACCGCGGCGTGCGGCAGCGGCATTGGGGGAAGTGGGTCGCGGAGATCCGCCTGCCC
CGCAACCGCACCCGCCTCTGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCG
GCTCCGCGGCGAGTCCGCCAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGATGCCG
CGATCGACGCCAAGCTCCGCTCCATCTGCCACGGGGAAGACATGCCGCAGAGCCAGAGCAATGAGACGCCGGCGCCGACG
CCGACACTGACGCCGATTTCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCTTCGTCGGCTGA
CGGCGAGGTGTCCTCGTGCTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTCCC
TGCTGCGCAAGTACCCGTCGCTCGAGATCGACTGGGACGCGATCCTTTCTTGA---------------------------
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>chr4D_1_TraesCS4D01G267500
TAGAGCGGGAGGAGGAGGAGCGCTGACAGCGGTAGGCACGAGAGAAGGGTCGGTTTGCGGAAAAAAAAAGCATGTTGTGT
GTCCGTATAGGCTTTCAATCTTCTTAGTAATATTTTTTTTGAAACAAATAAGAGTAGGTCCGATCTCCGTGGCTAAAATT
ACACTCTCGTGTCTCTGCCGTATACAGTACATACGGTATCACTGTCTGCATGTCCTTGTTTCTGGAAGAGCAAGGAACAT
CTTTCTGGAAGGAAAATGAAGGCCATGGTGTGCTCACATTTTCCAATGGTACTATAGCATAATTCGCCACAAATTGCCCG
TGTAGACCATCGCTCATAAACAATGACACTGTCACCAAATCAAAGCGATGTACGGGCGGCCCTTACATCGCCATCGTATC
GTTAAATCGACACCACTATTACCGGCCCTCGATGTTGTATTGCCATACA-------GTACAAAATTGGAAATGTACCATT
TATATAAGACAAACAACAGTATATACGTACGTACAATCTACACTAGGCGGCCTTGCAATCCCAGGAGGAAAAAACAAATC
CGTGAGTGATCGTGAGTGCTCGGAGACCGTAGCAACCAAGTTGCCGCGTAGATCAGTCACTCGACGACAGTCAAGTGACA
GCTAGATCTGGACTTTACCAGGTCAAAATCACCCCTTGGCCAATCGCAAACCGCCAGGTGCCCGTCGTGTCACCGCCACC
TGCTCGGCGACGCCCGTCCGGTCGTGGAGGCGTCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCT
CATTGGCCCGATCCTGCTTCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGCTCTTGCTCACCAAATCAAGCGCTTCC
TCCGCCGCTGCCCAACAGCTCGCACCAAGCTCC----CATTCTCATAGCAAATCGTGCAGTTCATCCTAAATTACCAGCT
CTCCTCGGCTTCTCTTCCTCCAAATCGTCGGCGTTT-----------------------------------CTTGATCGA
C-AGGGCATGGCGACGACGGTGGACTGGCGCAGCTATAGGCCCGATCTTCCTGCGGCGATGTACCGCATGGTGGACAGCA
GAGACCAGGTAATGCACGCGTTCGCTCCGCCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCATGCCCC
GGCGCGGATCAGAGCGCCGGCCTGCTTCGTGGCGCCACCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCT
CCACCACGTGCGCCGGGCGCCGGGCGCGCCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCGGCGCTCC
CGGTGCGGCCGGCGACCAAGCTGTACCGCGGCGTGCGGCAGCGGCATTGGGGGAAGTGGGTCGCGGAGATCCGCCTGCCC
CGCAACCGCACCCGCCTCTGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCG
GCTCCGCGGCGAGTCCGCCAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGATGCCG
CGATCGACGCCAAGCTCCGCTCCATCTGCCACGGGGAAGACATGCCGCAGAGCCAGAGCAATGAGACGCCGGCGCCGACG
CCGACACTGACGCCGATTTCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCTTCGTCGGCTGA
CGGCGAGGTGTCCTCGTGCTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTCCC
TGCTGCGCAAGTACCCGTCGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAATCAAGTTCATGCTCGATCCACAGCTC
GTCCAAAGTGATTACTTCTGCTTTCATTA----------------------GGTTTGATCGAGTATTCGTGTGTAGCATC
AACCCCTCCCTGCTCTGCTTGGTTTTTGAATGGCATTGCCAGGAAGAAGGTTTTATGTAGAAATTT-AAGTCTGTCATGT
CGTAGTTTGTGATTCAATAAAGATACACTTTGGTAGTACTCGAAATTGCTCG---TATGTGTTTTGTATTGCAGAACTCT
CTT-TATTGTTTAGAATAGCATGACAGAAATGAGATGGAAATTTTATTATAAGGCGGGTTCAAAAGTTGAATGAAACATG
AACTAGTATAAAAGTTGCAAATTTGTTCCTAAATGCATCAACTAACCTCAGGACTATGAAGTAAGAAAAATCCCACTTTT
GATAGAAACTTGAAGATTTTGATGTTCTTGCATGAATTTGACTTTCAGAGACAACACTGCATGAGCCGATTTCCACGGAA
ATCACCGTCACACAAATCTCTTTCCATCTAGAGTCTTGGGGCTTGATACTTGTGGTGTCAAAAAGAATTTTAATTTAGAG
AACATTCCACTAATTTCAAATTCATATGATGTATAGACATTGCTATATTGTCGTTAATTCTAACATTAAAGATTATGAAT
G-CAATTTTCCTTTTTGGTAGGGATGTGTTTGCAAGGACCTGTGATAATCAAGCCTTTAGAGAACAATAAGGTACTCCTA
CTTGACAACAGTTTGAAAAGGGCTTGGGCGATGTTGGAATTCTTGCTGGTTTGGCATTGCCGCTCTTGGTTCGGGCTTGG
TAGGTTTAGCCGTGATGCATCCACTGTTCGGGTTGAGCATCCCTTGTCTCTCTGCTTCGGACACCATGTTCACGCCTGCA
TACGTTAGTGTCATGTGTTTTTTATGCTAAAATTATTTGTAGCGCCATGATTTTGAATGCATTTTTCTTATTATGTAAGC
ATGCATGTGTTTGTGAGGACCTGTCATACTTGAGCCTTTAG
>chr4A_1
TAGAGCGGGAGGAGGAGCAGCG---ACAGCGGTGGGCACGAGAGGAGGGGCGGTTTGCGAAAAAAAA---CATGTTGTGT
GCCTGTATAGGCTTTCAATCTTCTTAGTAA-ATTTTTTTTGAAACAAATAGGAGTAGGTCCGATCTCCGTGGCGAAAATT
ACACTCTCGTGTCTCTGCCGTATACAGTACATAGGGTATCACTGTCTGTATGTCCTTGTTTCTGGAAGAGTAAGGAACAT
CTTTCTGGAAGGAAAAAGAAGACCATTGTTTGCCCACATTTT-CAATGGTACTGTAGGATAGTTCGCCACAAATTGCCCG
TGTGTACCATCGCTCATAAACAATGACATTGTCACCAAATCAAAGCGATGTACGGGCGGCCCTTGCATCGCCATCGTATC
GTTACATCGACACCACTATTACCACCCCTCGATGTTGTATCGCCATACAATAGTACGTACAAAATTGGAAATGTACCATT
TATA--AGACAAACTACTGTGTATA--TACGTGCAATCTACGCTAGGCGGCCTTGCAATCCCAGGAGGAAAAAACAAATC
----------CGTGAGTGCTCGGAGACCGTAGAAACCAGGCTGCCGCGTAGGTCAGTCACTCGACGACAGTCAAGTGACA
GCTAGATCTGGACTTTACCAGGTCAAAATCACCCCTCGCCCAATACCAAGCCGCCAGGTGCCCGTCGTGTCACCGCCACC
TGCCCGGCGACGCCCGTCCGGTCGTGGAGGCGCCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCT
CATTGGCCTCGCCCTGCTTCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGCTCTTGCCCACCAAATCAAGCGCTTCC
TCCGCCGCTGCCCAACAG-TCGCACCCGGCTCCAATTCATTCTCTTGGCAAATCGTCCAGTTCATCCCAAATTACCAGCT
CTCATCCGCTTCTCTTCCTCCAAATCGTCGGCGTTT-----------------------------------CTTGATCGA
CGAGGGCATGGCGACGACGGTGGACTGGCGCAGCTATAGGCCCGATCTTCCGGCGGCGATGTACCACATGGTGGACGGCA
GAGACCAGGTAATGCACGCGTTCGCTCCGCCGACGGCGCAGGGCGCGGCGCCGACCATCTCCTTCTCCTTCCCCTGCCCC
GGCGCGGAGCAGAGCGCCGGCCTGCTTCGTGGCGCCAGCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCT
CCACCACGTGCGCCGGGCGCCGGGCGCGGCCATGGCAGTGGCGGGGCAGCCCATGAAGCGGCACGGCGTTGCGGCGCTCC
CGGCGCAGCCGGCGGCCAAGCTGTACCGCGGCGTGCGGCAGCGGCATTGGGGGAAGTGGGTCGCCGAGATCCGCCTGCCC
CGCAACCGCACCCGCCTCTGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCG
GCTCCGCGGCGAGTCCGCCAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGACGCCG
CGATCGACGCCAAGCTCCGCTCCATCTGCCACGGGGAGGACCTGCCGCAGAGCCAGAGCAATGCGACGCCGGCGCCGACG
CCGACCCTGACGCCGAGCTCTTTCCCGGACGTCAAGAGCGAGCCAGGCTGCTCCGTCTCCGAGAGCTCGTCGTCGGCCGA
CGGCGAGGTGTCCTCGTGCTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTCCC
TGCTGCGCAAGTACCCGTCGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAACCGAGTTCATGCCCGATCCACAGCTC
GTTCAAAGTGATTGCTTCTGCTTTCGTTAGGCTCTTAGATAGGTTATTATGGGTTTGATCAAGTATTCTTGTGTAACATC
AA----TCCCTGCTCTGCTTGGTTTTTGAATGGCATTGCCAGGAAGGAGGTTTTATGTAGAAATTTTAAGTATGTCAT--
-GTAGTTTGTGATTCAATAAAGATACACTTTGGTA-TACTTGAAATTGCTATTGGCATGCGTTTTGTACTGCAGTACTTT
TTTATATTGTTCAGAATAGCATAACAGAGATGAGATGAAAGTTCTAATATAGGATGAGTTCTACAGTTGAATGGAACATG
AATTAGTATAAAAGTTGCAAATTTGTTCCTAAATGCATCAACTAACCTCAGGACTATGAAGTAAAAAAAAAATCC--CTT
GATAGAAACTTGAAGATTTTGATGTTCTTGCACGAATTTGACTTTCAGAGACGACACTGCATGAGCCGGTTTCCACATAA
ATCACCCTTGCACAAATCTCTCTCAGTCTAGAGTCTTGGGGTTTGATACTTGTGGTGTCAAAAATAATTTTAATTTAGAC
AACATTCCACTAATTTCAAATTCATATGATGTGTACACATTGCTATATTGCCGTTAATTTTAGCATT-AAGATTATGAAT
G-CAATTTTCCTTTTTGGTAGGGATGTGTTTGCAAGGACCTGTGATAATTAAGCCTTTAGAGAACAATAAGGGACTTGAC
A-----AACAGTTTGAACATGGCTTGGGAGATGTTGGAATTCTTGCTGGTTCGGCATTGCCGCTCTTGGTTCAGGCCAGG
TAGGTTTAGCTATGATGTATCCCCTGTTCGGGTCGATC-------GTCTCTCTGCTTCGGGCATCATGTT----------
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>chr4B_553
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-------------------------------------------------------------------------------C
CGTGAGTGATCGTGAGTGCTCGGAGACCGTAGCAACCATGCTGCCGCGTAGATCAGTCACTCGACGACAGTCAAGTGACA
GCTAGATCTGGACTTTATCAGGTCAAAATCGCCCCTTGGCCAATCCCAAGCCGCCAGGTGCCCGTCGTGTCACCGCCACC
TGCCCGGCGACGCCCGTCCGGTCGTGGAGGCGTCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCT
CATTGGCCGGATCCTGCTTCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGTTCTTGCTCACCAAATCAAGCGCTTCC
TCCGCCGCTGCCCAACAGCTCGCACCCGGCTCCCATTCATTCTCTTGGCAAATCGCCCAGTTCATCCTAAATTACCAGCT
CTCCTCGGCTTCCCTTCCTCCAAATCGTCGGCGTTTTCTTCCTCTGGTTCTCTGCCTGTGTGTCCGAGTTTCTTGATCGA
CAAGGGCATGGCGACGACGGTGGACTGGCGCAGCTATAGGCCCGATCTTCCTGCCGCGATGTATCACATGGTGGACAGCA
GGGACCAGGTAATGCACGCGTTTGCTCCGGCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCCTGCCCC
GGCGCGGAGCAGAGCGCCGGCCTGCTTCGTGGCGCCAGCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCT
GCACCACGTGCGCCGGGCGCCGGGCGCGGCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCAGCGCTCC
CGGCGCGGCCGGCGACCAAGCTTTACCGCGGCGTAAGGCAGCGGCATTGGGGGAAGTGGGTCGCCGAGATCCGCCTGCCC
CGCAACCGCACCCGCCTCTGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCG
GCTCCGCGGCGAGTCCGCCAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGACGCCG
CGATCGACGCCAAGCTCCGCTCCATCTGCCACGGGGAAGACATGCCCCAGAGCCAGAGCGATGAGACGCCGGCGCCGACG
ACGACACTGACGCCGATTTCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCGTCGTCGGCTGA
CGGCGAGGTGTCCTCGTGCTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTTCC
TGCTGCGCAAGTACCCGTCGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAATCAAGTTCATGCTTGATCCACAGCTC
GTCCAAAGTGATTACTTCTGCTTTCATTAGGCTCTTGGATAGGTTATTATGGGTTTGGTCAAGTATTCATGTGTAACATC
AA----CCCCTGCTCTGCTTGGTTTTTGAATGGCATTGCCAGGAAGGAGGTTTTATGTAGAAATTT-AAGTCTGTCATGT
AGT--TTTGTGATTCAATAAAGATACACTTTGGTA---CTTGAAATTGCTGTTGATATGTGTGTTGTACTGCAGAACTTT
TTTATATTGTTCAGAATAGCATAACAGAAATGAGATGAAAATTTTAATATAAGATGAGTTCAAAAGTTGAATGAAACATG
AACTGGTACAAAAGTTGCAAATTTGTTCCTAAATGCATCAACTAACTTCAGGATTATGAAGTAAAAAAAATCCCACTCTT
GATAGAAACTTGGAGATTATGTTGTTCTTGCACGGATTTGACTTTCAGAGACGATATTGCATGAGCTGGTTTCCACAGAA
ATCACCCTCGCACAAATCTCTTTCCATCTAGAGTCTTGGGGCTTGATCATTGTGGTGTCAAAAACAATTTTAATTTAGAT
AACATTCCACTAATTTCAAACTCATATGGTGTATACACATTGCTATATTGTCGTTAATTTTAGCATT-AAGATTATGAAT
GCCAATTTTCCTTTTTGGTAGGGATGTGTTTGTAATGACATGTGATAATTGAGCCTTTAGAGAACATGAAGGTACTTAAC
A-----AACAGTTTGAACATGGCTTGGGCGATGTTGGAATTCTTGCTGGTTCGGCATTGCCGCTCTTGGTTCAGGCTTGG
TAGGTTTAGTTGTGATGTATCCTCTGCTCAGGTCGATCATCCATTGTCTCTCTGCTTCGTAT--CATGTTCCCGCCTGCC
TGCGTT--------------------------------------------------------------------------
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>SNPs
-----------------S----SSS--------S----------S----S---------S-------SSS----------
-S-S--------------------------S-------------------S----------------------S------
---------------------------------S--------------S---------------------S---------
----------------S----S----S--S---S--------S----------S---S---S------------------
---SS-----------------------S-----------------------------------S---------------
----S------------------SS---------------S---------------------------------------
----SS--------S--S--S----SS-----S--------S--------------------------------------
--------------------------------------S-S---------------------------------------
---------------------------------------------S---S------------------------------
---S----------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------SS----------------S-S---------S-----------------------
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-----------------------------------------------------------------S--------------
-------------------------------------------------------------------------S------
--------S----------------------------S------------------------------------------
----------------------------S---------------------------------------------------
---S------------------------------------------------------------S---------------
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---------------------------------------------------------------------------S----
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--------------------------------------------------------------------S-----------
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------------------------------------------------------------S-------S------S----
--SSSS----------------------------------------S---------------------------------
S----------------------------------S----S---------SS----------------S---------S-
S----------S----------S--------------S--------S------SS-S-----------------------
----------------------------------------------------------------S------------S--
--------------------------------S-------------------S---------------S-------S---
------S--S------------------------------------------------------S--------------S
-----------------------------------S-----------------------S--S----S------------
-------------------------------------------------S--------------------------SSSS
SSSSSS-----------S-S-------------------------------S--------------------S-------
----------S------S----S----------S--S-----S--------------------S-------S-------S
-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_325
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-----------------------------------------------------------------GCCACAAATTGCCCG
TGTAG---------------------------------------------------------------------------
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>reverse_2006
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-----CTCCCTGCTCTGCTTGGTTT-------------------------------------------------------
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