>input_sequence_67279
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--------------------------------------------------------------------ATGGCCAAGCGC
CTCTTCCACTCTTGCCGCTCCCCGTCCGCCGCCGCCGTGGTCACCCCCGCCACCAACCTCCTCGCCAAGCACCACTCGCC
GGCCTTCACGCCCCCCGCCGGCGGATGCTGTCCGCGCGGCCTCACTCACCGGCGGCCGCTGCCACCGGAGACCTGCGGCG
CCATGCGCTGCGCTGCCGACTACACTGCCGACGACCTCCCTCCGGCCCGCGGAACGCCCGCCTACCGCTGGCTGAAGAGC
TCCCACTGGCACGTCATCGAGGCCGCCACCGACGGCGACGACACGCCCCGCCTCAAGATCGACGCGCGGCGCCGGCTGCG
GCGCTCCCGGCGCCGCCGCCGGCTCCACCGCAAGGCGGCCATAGAGAGCCTGTCGTCCGGCGACAGCGGGTGGTTCAGCA
GCAGCGAGGAGCCGAGCGCGTACAGCAGCCGCAGCGTCGAGGCGGAGGCGACGCTGGTCACGTCCACCGCGACGGAGACC
TCGTCGGGCGTGAGCGGGAGCTCCGGCGCCGTGGCGGCGACCGCTGAGGCGCGAGCGGAG------------GCGGTGGT
GGCCGGGAGCTTCGCGGTGGTGAAGCGCTCGGACGACCCCCGGGCGGACTTCCGGCGGTCCATGGCGGAGATGGTGGTGG
GCCGCGGCATCTACGACGCCGACGGGCTGGAGCGCCTGCTGCGGTGCTTCCTGGCGCTGAACGACCAGCGCCACCGCCGC
GACATCGTCGACGCCTTCGGCGACGTGTGGGAGGCCGTGTTCGCCAGCCCGCTGCCGCACGGCGCCGTCACGTCCGCGCC
TGCCGCGAGCTGCCGCGCGGCCGCCGCAGGGGCGCCTCGTCAGTAG----------------------------------
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>chr4A_1_TraesCS4A01G041100
ATGTGTTTAAAAATTAAGTGATGATGGTTGAGCAGTATATCACTGTCACGGCCTCCTCATGTGGGTGGCCCCTTGGGAGC
ATAAGGGAGTATGAGCGGCAGTTGGTGGAAGCCGACATAGTGGCAGGCGGTGGTGGGAATTGGGGATCACTTGATCGAGA
GTTGGACGACAGTCCAATAGACAAGATTTGC-------TATTTCATCTTTTTGAAGG-----------------------
----------------------------------------------------GATTTAGAGTTGGGCCATAGAAGTTGGA
TGTTGACCAACATGACATAGGAGTTATTTTCATTTATTAGTTTTTTATGGGTATCCATTGGGTTATTCATGGGCACAAGT
TCATACCCATGCCCTATCCATATATTTTGCGGGTATGGATACCCATTACTCATGGGTATAAAATCTCTCCAAGTCTTGCC
CATGTCTATTGTTTTCAGGTAAAGTACCCGCGGGTACCCATGTCCATGGGTAAAACTGCCATCCCTAGTTTAATTAGATC
TACGTGGACTTTGGCCGGCGTTTAACCGACCACTTATGTTTAATTATGTTATTATGTTTATTTCATACAATTTATTTATT
TATTTTCACGCCTGTATATTTGAGTCGGCCTTCCGTTGGACCGTCAAGTCTACCCATTTTAAAATACGGACGCACACGTC
CACTTAACCGATTCAAACAGACAAAATGGGTATAAAGTGCGCGTGCGTTTGGGTCGTCCTGCTCTTAGTGACAGGAAACC
CGCACAATCGTAGAACAATTTAGCAACATCAGTATTTCCAT-----TTATTTTAACAAGACTCAACATCAGTATT-GCAC
GGAAAACTCCACAAACGCTGTCGCTGTCACTGATCATTTCCCACCCAGTTCCACAGTCCACA--------CCA-----CT
CTTGCGTTGCCGGCTCGTCC-------TGACCTCCTCCACCCTCCCAACCCCCACCCTCGCGTCACACATTTCGCACTAT
AAACTTGCGATCCCGGCCTCATTTACGCCACAACACACTGCACCGGCCGTGCGCGTCGCTCGTCACCCATGGCCAAGCGC
CTCTTCCACTCTTGCCGCTCCCCGTCCGCCGCCGCCGTGGTCACCCCCGCCACCAACCTCCTCGCCAAGCACCACTCGCC
GGCCTTCACGCCCCCCGCCGGCGGATGCTGTCCGCGCGGCCTCACTCACCGGCGGCCGCTGCCACCGGAGACCTGCGGCG
CCATGCGCTGCGCTGCCGACTACACTGCCGACGACCTCCCTCCGGCCCGCGGAACGCCCGCCTACCGCTGGCTGAAGAGC
TCCCACTGGCACGTCATCGAGGCCGCCACCGACGGCGACGACACGCCCCGCCTCAAGATCGACGCGCGGCGCCGGCTGCG
GCGCTCCCGGCGCCGCCGCCGGCTCCACCGCAAGGCGGCCATAGAGAGCCTGTCGTCCGGCGACAGCGGGTGGTTCAGCA
GCAGCGAGGAGCCGAGCGCGTACAGCAGCCGCAGCGTCGAGGCGGAGGCGACGCTGGTCACGTCCACCGCGACGGAGACC
TCGTCGGGCGTGAGCGGGAGCTCCGGCGCCGTGGCGGCGACCGCT------------GAGGCGCGAGCGGAGGCGGTGGT
GGCCGGGAGCTTCGCGGTGGTGAAGCGCTCGGACGACCCCCGGGCGGACTTCCGGCGGTCCATGGCGGAGATGGTGGTGG
GCCGCGGCATCTACGACGCCGACGGGCTGGAGCGCCTGCTGCGGTGCTTCCTGGCGCTGAACGACCAGCGCCACCGCCGC
GACATCGTCGACGCCTTCGGCGACGTGTGGGAGGCCGTGTTCGCCAGCCCGCTGCCGCACGGCGCCGTCACGTCCGCGCC
TGCCGCGAGCTGCCGCGCGGCCGCCGCAGGGGCGCCTCGTCAGTAGGAGTGCAGAGCACGCATGGCCACCCTGTAAAATG
TGATTATGTGTG---GTACATGTGGTAGACTAGACGTACGTACGTATGTAAATTACTAGTACTCTATGTTCTTTCTTCTT
TGGGTTTGCGGCCGTGGCCGCCTTCCTCCCGGTTGCTTGCATGCCACTTCATCTTTGCAGTGTGGAAATGGGCGCGCGAC
TACTCG----GATGGGATTGGACGTGAACAGGGAGCGTCTCTCTGCACACATGCCTATTTCTCGATCTCAGCTCTCAGCT
CTCAGCTCT--CAGCTCATCTCCGAATTCTGTAAGAATATAAGTTGCTCTGGTGAATCATATTTTACTACATCCTGCAAA
TTGGGTTTTCCAGTTTCATGTTGGAAAAGAAAATGCTCACTATCTAACTATGCTTCTTGCTCTTCTATTTTTGTTTAGTT
TTTTTCATCATATAACTCATTTTGTCTTTACCGAAAGAAAAACGGAACTCATTTTGTGTGGCATGGAAAGGTGTGGCGCA
GTAGTACCACCACACGACTCAGGGGCGAATCTACTAGAGGGCTTGCAAGAATTTTTTTTACTACTAGTTTCATGGCTCAA
TTCAACCACTTGCAAGCCCAACCCAACAGATATTGGTATGATACAGGCTTTTGAGCCCACCCTCCAATTTCTGTCTAGAT
TCGTCACTGACACGACTCGAGGAAATAGACCTAGTACTCGTTGGATTGTTTGTCTCTTCATTTATTAGCGATTTTGCAGC
CATGATCGGGGACAGCGATAAGCCATTTGACCC-AAAGTGTGATGTGATGTTGCACCCCTAAGATTAGATGGAAGTGGAC
AAACAAAGAGGCCAATCCCCAAAGTGGTTTCAAATAGTTTCGGCCCGGTATGGGCTCGTTTGGTTCAAAGGAATTCTATA
GGATTTTCAAAGGATTAGCAATTTTTT-CTACATTGC-TCTTTGATTTATAACATTGGATTTCATTAGGATTTTTTCTAC
GAAACC-TTTTACTGCATT
>chr7A_1
ATGAGTTTAAAAATTAAGTGATGATGGGTGAGCAGTATATCACTTCCACGGCCTCCTCACGTGGGTGGCCTCTTGGGAGC
ATAAGGGAGTACGAGCAACGGTTGGTGGAAGCCGACACAGTGGCAGGCGGTGGTGGGAATTGGGGATCACTTGATTGAGA
GTTGGACGATAGTCCAACAGAGAAGATTCGATAATCGATATTTCATCTTTTTGGGGAGTCACATAGGACGTAGGAGGAGT
GTCGAGTAGGTGATTACGGGCCTGTGAGCTATGGACGGTTTAAAGAATACAAGATTTAGAGTGGGGCCATAGGAGTTGGA
TGTTGACCCACATGTCATAGGAATTATTTTCATTTATTATTATTTTATGGGTATTCATTGGGTTACCCATGGGCACAAGT
TCATACCCATGCCCTACCCATACATTCTGCGGGTATGGATACCCATTACCTGTGGGTACAAAATCTCTCCAAGTCTTGCC
CATGCCCGTTGTTTTCGGGTAGGGTACCCACGGGTACCCATGCCCATGGGTAAAACTGCCATCCCTA-------------
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>chr4B_701
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--------------------------------------------------------------TCTTAGTGACAGGAAATT
CGCAGAATCGTAGAACAATTTCACTGCATCAGT------AT-----TTATTTTAACAAGACTCCACATCAGTATT-GCAC
GGAATACTACACAAACGCAGTCGCTGTCACTGATCATTTCCCACCCAGTTCCACACCAATAAAACCATGCCCC-----CT
CTTCCCTTGCCGGCTCCTCC-------TCACCTCCTCCAACC--CCAACCCCCACCCTCGCGTCACACATTTCGCACTAT
AAACTTCCGATCCCAGCCTCATTTACGCCACAACACATTGCACCGGCCGTGCGCGTTGCTCGTCACCCATGGCCAAGCGC
CTCTTCCATTCTTGCCGCTCCCCGTCCGCCGCCGCCGTGGTCACCCCCGCCACCAACCTCCTTGCCAAGCACCACTCACC
GGCCTTCACGCCCCCCGCCGGCGGATGCTGTCCGCGCGGCCTCCCTCACCGGCGGCCGCTGCCACCGGAGACCTGCAGCG
CGAGGGGCTGCGCTGCCGACTACACTGCCGACGACCTCCCTCCGGCCCGTGGAACGCCCGCCTACCGCTGGCTGAAGAGC
TCCCACTGGCACGTCATCGAGGCCGCCACCGACGGCGACGACACGCCTCGCCTCAAGATCGACGCGCGGCGCCGGCTGCG
GCGCTCCCGGCGCCGCCGCCGGCTCCACCGCAAGGCGGCCATAGAGAGCCTGTCGTCCGGCGACAGCGGGTGGTTCAGCA
GCAGCGAGGAGCCGAGCGCGTACAGCAGCCGCAGCGTCGAGGCGGAGGCGACGCTGGTCACGTCCACCGCGACGGAGACC
TCTTCGGGCGTGAGCGGGAGCTCCGGCGCCGTGGCGGCGGCCGCT------------GAG------------GCGGTGGT
GGCCGGGAGCTTCGCGGTGGTGAAGCGCTCGGACGACCCCCGGGCCGACTTCCGGCGGTCCATGGCGGAGATGGTGGTGG
GCCGCGGCATCTACGACGCCGACGGGCTGGAGCGCCTGCTGCGGTGCTTCCTGGCGCTGAACGACCAGCGCCACCGCCGC
GACATCGTCGACGCTTTCGGCGACGTGTGGGAGGCCGTGTTCTCCAGCCCACTGCCGCACGGCGCCGTCACCTCCGCGCC
TGCCGCGAGCTGCCGCGCGGCCGCTGCAGGGGCGCCTCGTTAGTAGAAGTGCAGAGCACGCATGGCCACCCTGTAAAATG
TGATTATGTGTGGTCGTACACGTGGTAGACTAGACGTACGTATGTAACTTATAC-----TACTCTATGTTCTTTCTTGTT
TGGGTTTGCGGCAGCGGCCTCCTT----CCGGTTGCTTGCATGCCACTTCATCTTTGCAGTGTGGAAATCG--GCGCGAC
TACTCG----GATGTGATAGGACGTGAACAGGGAGCGTCTCT-------CATGCCTATTTCTCGATCTCAGCTCTCAGGT
CTCGGCCTAGCCATCTCTTCTCAGAATTCTGTAAA-----TAGTTGCTCTGGTGAATCGTATTTTACTACATCCTGCAA-
TTGGGTTTTCCAGTTTCATTTTGGAAAA-----TGCTCACTATCTACCTACGCTTCTTGCTCTTCTATTTTTGTTTAA-T
TTTTTTATCACAGAACTCATTTTGTCTTTACCAAAAAAATA---GAACTCATTTTGTGTGGTATGAAAAGGTGTAGCGCA
GTAGTACC------------------------------------------------------------------------
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---------ACACGACTCGAGGAAATAGACCTAGTACCTGTTGGATTGTTTGTCTCTTCATTTATTGGCAATCTTGCAGC
CATGATCGGGGACAGCGATAAGCCATTTGACCC-AA---GTGATGTGATGTTGCACCCCTAGATTA-----GACGTGGAC
AAAC-------CCAATCCCCAAAGTGGTTTC----------GGCACAATAGGGCCTATTTTGGTTCAAACGAATTCTATA
GAATTTTCAGAGGATTAGTATTTTTTTTCTACATTGGTTATTTGATTTATAACATTGAATTCCACAAGAATTTTTT-TAC
GAAACC-T-----------
>chr4D_721
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--CACCATCGTAGAACAATTTCGCTACATAAGT------ATGTCCATTTTTTTAACAAGGCTCCACATCAGTATTTGCAT
GGAGTACTCCACAAACGCAGTCGCTGCCACTGATCATTTCCCACCCAGCTCCACACCAATAAAACCATGCCCCTCTTTCG
CTTGCCTTGCCGGCTCCTCCCGAGTCCTGACCTCCTCCAACC--CCAACCCCCACCCTCGCGTCACACATTTCGCACTAT
AAACCGCCGATCCCAGCCTCATTTACGCCACAACACACTGCACCGGCCGTGCGCGCTGCTCGTCACCCATGGCCAAGCGC
CTCTTCCATTCTTGCCGCTCCCCGTCCGCCGCCGCCGTGGTCACCCCGGCCACCAACCTCCTCGCCAAGCACCACTCGCC
GGCCTTCACACCCCCCGCAGGCGGATGCTGTCCGCGCGGCCTCACTCACCGGCGGCCGCTGCCGCCGGAGACCTGCAGCG
CCAGGGGCTGCGCTGCCGACTACACTGCCGACGACCTCCCTCCGGCCCGCGGAACGCCCGCCTACCGCTGGCTGAAGAGC
TCTCACTGGCACGTCATCGAGGCCGCCACCGACGGCGACGACACGCCTCGCCTCAAGATCGACGCGCGGCGCCGGCTGCG
GCGCTCCCGGCGCCGCCGCCGGCTCCACCGCAAGGCGGCCATTGAGAGCCTGTCGTCCGGCGACAGCGGGTGGTTCAGCA
GCAGCGAGGAGCCGAGCGCGTACAGCAGCCGCAGCGTCGAGGCGGAGGCGACGCTGGTCACGTCCACCGCGACGGAGACC
TCGTCGGGGGTGAGCGGGAGCTCCGGCGTCGCGGCGGCCGCCGCG---------GCGGAG------------GCGGTGGT
GGCCGGGAGCTTCGCGGTGGTGAAGCGCTCGGACGACCCCCGGGCCGACTTCCGGCTGTCCATGGCGGAGATGGTGGTGG
GCCGCGGCATCTACGACGCCGACGGGCTGGAGCGCCTGCTGCGGTGCTTCCTGGCGCTGAACGACCAGCGCCACCGCCGC
GACATCGTCGACGCCTTCGGCGACGTGTGGGAGGCCGTGTTCGCCAGCCCACTGCCGCACGGCGCCGTCACCTCCGCGCC
TGCCGCGAGCTGCCGCGCGGCCGCTGCAGGGGCGCCTCGTCAGTAGGAGTGCAGAGCACGCATGGCCACCCTGTAAAATG
TGATTATGTGTA---GTACATGTGGTAGACTAGACGTACGTATGTAAAT--TAC-----TGCTCTATGTTCTTTCTTGTT
TGGGTTTGCGGCAGCAGCCTCCTT----CCGGTTGCTTGCATGCCACTTCATCTTTGCAGTGTGGAAATGG--GCGCGAC
TACTCGATCAGATGTAATAGGACGTGAACAGGGAGCGTCTCTCTGCACACATGCCTATTTCTCGATCTCAGCTCGCAGGT
CTCGGCCTAGCCATCTCTTCTCAGAATTCTGTAAAAATCTTAGTTGCTCTGGTGAATCGTATTTTACTACATCCTCCAA-
TTGGGTTTTCCAGTTTCATTTTGGAAAA-----TGCTCACTATCTACCTACGCTTCTTGCTCTTCTATTTTTGTTTAA-T
TTTTTTTACCAC----------------------------A---GAACTCATTTTGTGTGGCATGAAAAGGTGTAGCGCA
GTAGTACC------------------------------------------------------------------------
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---------ACACGACTCGAGGAAATAGACCTAGTACCTGTTGGATTGTTTGTCTCTTCATTTATTGGCGATTTTGCAGC
CATGATCGGGGACAGCGATAAGCCATTTGACCCAAA---GTGATGTGATGTTGCACCCCTAGATTA-----GACATGGAC
AAACAAAGAGGCCAATCCCCAAAGTGGTTTCAAATAGTTTCGGCACAGTAGGGCCTATTTTGGTTCAAACGAATTCTATA
GGATTTTCAGAGGATTCGCAATTTTTT-CTACATTGGTTCTTTGATTTATAACATTGGATTCCACAAGAAATTTTTATAC
GCAACTTTTGTACTGCATT
>SNPs
---S-----------------------S----------------SS-------------S----------S---------
-----------S----SS-S-----------------S-------------------------------------S----
---------S-------S---S------S-S----------------------SS-S-----------------------
--------------------------------------------------------------S---------S-------
--------S-----S-------S----------------S-S------------S----------SS-------------
----------------S-----S---S----------------------SSS------S---------------------
----S-SS--------S----SS------S------------S------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SS
---------------------S--S--------SSSSSS------------------------S----------------
----S-------------S------------------------------------SSSSSS-----------S-------
-----S----------S----------------------S--SS------------------------------------
------S-------S-----------------------------------------S-----------------------
--------S-----------------------------------------------------------------------
----------------------------------------------------------------------------S---
---S-S--------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
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---------------------------------------S--------------------SSSSSSSSSSSS--------
---------------------------------------------S----------------------------------
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--------------------------------------------------S--------------------S--------
------------------------S-------------------------------------------------------
------------------------------------------S---SS-S-SSSSSSSS------------------S--
------------S-S----S----SSSS-------------------------------------------SS-------
--------------S---S-----------------------------------------------------------S-
---S--SSS----S---S----S-----------S---S-S-----------------S--------------------S
-------------------S--------SSSSS-------------S---S--------------------------SS-
-----S----S-S-------------------S---S--S-SSS---------------------S--------S-----
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------------------SS---------------------------S-------------
------------------------------------SSS----------------------SSS-SSSSSS--S------
--------------------------------------------S-S---S--S--SS-----------S----------
---------S--------------------------S------------------------S--SS--S-------S---
---------S---------
>forward_577
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-----------------------------------------------------------------------------ATC
TACGTGGACTTTGGCCG---------------------------------------------------------------
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>reverse_2495
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--------------CGACTCAGGGGCGAATCTAC----------------------------------------------
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