>input_sequence_67269
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-----------------------------------------------------------------ATGAGAGGGAGTGAG
CGGGCGGCGGTGTCAACGTCAACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGCAAGGGCTGCAACGACGCCTG
CGTGCTGCGCCCGTGCCTGCTCTGGATCGAGGCCGCCGACGCGCAGGGCCACGCCACCCTCTTCGCCGCCAAGTTCTTCG
GCCGCGCCGGCCTCATGTCCTTCCTCACCGCTGTCCCCGAGCAGCAGCGCCCAGGTACGTACGGACGGACGGGAGATCGA
TGGTCTTCTT---GGCACGACGATGCATCGGTAGTACAGTATATGTGTTGACCTTTTTTGCCTGAAGTTTGCATGCTGTT
TGCTGTGGATTGCAGCCGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGCGGACGATCAACCCGGTGAGCGGAGCCGTG
GGGCTGCTCTGGGCGGGGAGCTGGCACCTCTGCGAGGCGGCGGTCCAGACCGTGCTCCGGGGCGGCGCCATCCGCCCGCT
GCCGGAGCTCGCGGGCGGCGTCCCGGAAGGCGGCGTCGGTGGCAGCGATCTGTTCGTCTCCTCTTCCAGGCGGGCCGTGG
TGGGGTGCTCCACTTATTCGGCGGCGAAGCGGGTGACGCCGAGGAAGACCTGGGCGCCGGAGGCCGCGTCCCACCACCAG
GAGCCCTCGTGCGACCTCGGGCTTTTCCTCACCCCCGGATCGGCCGCGGCGGCGGAGGGGGAGCGGCGGGCAAGGCGGGC
CGGCACGCCGTCGATGAGCTCCGACGGCTCCGTGACCACGAGCGCCGGCGC---------CGGCGCAGGCGAGAAGGAGC
CCGAGCTGCTGAATCTTTTTGTTTAAATGAAGCTAGTTATTAA-------------------------------------
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>chr2D_1_TraesCS2D01G193400
CCTGATTCCGATCGCGTTGCCGAGACGACGGGAAACCGGAGCGCTTGTGAGGAAGGCACGAACCG----GCGCGACACGG
CCAAGTGCGACCGAAACAGAAAGCCAAGATGCCCTTGGCAACTTGCACCACTCCGTGTGCCACTGCACT----CTGGACT
GCTGACATGCGGCGCGGTGCGGTGCGGCGACGAGAAAAGGTTTGCACCAGCCGAAAAAGGCGGAAGGCATCCTAGGTTCA
CTGTTCCTGGACCTCACAAGAATTTGTGCGTGCGGGTGATAATATGCGACGACGGGCCATAGGCTAGGTACAATTATTTC
ATTTTATTCTTGGTTATAGCTTTCGCGAGGTATCCCGTCAGGATTTTTTGAG----------------------------
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--------------------------------------------------------------ATAAATATACACATAAAC
GGACAACGAATGAGCCCCTTGGCTTTGCGACTGCTCGGTCCAGTGGCCTTGATGCTGCACCGGCGAGTGATTCGGCGCAG
CAAAAGCGGTGGAGGGTCCATCCGTCCATGCGCCTGGTGCATGGAGCAATTTTATTTTTGTGAGAAAGTTTGTGTGCATG
GAGCACTTGGCGAGGGAGGTCACAAGGTTCCAAAACGCAGGACGTAGCGGACGTACGTGGGCAGCCCAAGGTGCGGATCC
ACGCACACCGCAAAAGCGCGGAAAAAGAGTGGCGGAAAAACACACGAAAGCAGCCCGGACGGGGCGAACGCGAGGCGCAC
CACCCGAGCCGGCGGCCCCACGTCCACCCGCTGTCCAATCCCTCGATCCGACGGCCCGCGCTCGCACCGACCGGCCGCGG
AGACACGGAGCCGCCCCCGCACCCCTGGAGCCTGGAACCTCTTCCGCTTTACCTCAGCACGCGCGCCAGTTAACCCATCA
CGGTCACCCGACCGG-CCGGCCCTGGTTAGCGCCCGGTTACCTCCCGACCCCCTT----CCTCCTCGGCT--GCTGGTTA
TATACCCCGCCCCTCCCTGGCCGTGGGCGAGGTCGGGTTCTTGATCGGGGTTGGTTGGGTGTTGTATGAGAGGGAGTGAG
CGGGCGGCGGTGTCAACGTCAACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGCAAGGGCTGCAACGACGCCTG
CGTGCTGCGCCCGTGCCTGCTCTGGATCGAGGCCGCCGACGCGCAGGGCCACGCCACCCTCTTCGCCGCCAAGTTCTTCG
GCCGCGCCGGCCTCATGTCCTTCCTCACCGCTGTCCCCGAGCAGCAGCGCCCAGGTACGTACGGACGGACGGGAGATCGA
TGGTCTTCTT---GGCACGACGATGCATCGGTAGTACAGTATATGTGTTGACCTTTTTTGCCTGAAGTTTGCATGCTGTT
TGCTGTGGATTGCAGCCGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGCGGACGATCAACCCGGTGAGCGGAGCCGTG
GGGCTGCTCTGGGCGGGGAGCTGGCACCTCTGCGAGGCGGCGGTCCAGACCGTGCTCCGGGGCGGCGCCATCCGCCCGCT
GCCGGAGCTCGCGGGCGGCGTCCCGGAAGGCGGCGTCGGTGGCAGCGATCTGTTCGTCTCCTCTTCCAGGCGGGCCGTGG
TGGGGTGCTCCACTTATTCGGCGGCGAAGCGGGTGACGCCGAGGAAGACCTGGGCGCCGGAGGCCGCGTCCCACCACCAG
GAGCCCTCGTGCGACCTCGGGCTTTTCCTCACCCCCGGATCGGCCGCGGCGGCGGAGGGGGAGCGGCGGGCAAGGCGGGC
CGGCACGCCGTCGATGAGCTCCGACGGCTCCGTGACCACGAGCGCCGGCGC---------CGGCGCAGGCGAGAAGGAGC
CCGAGCTGCTGAATCTTTTTGTTTAAATGAAGCTAGTTATTAATCTGCGCGTTCATTCACCGTAGTAGTACCGCGCGATC
GACCGATCGATCGACGTGCTGCTCGCTCGCTGGCGCTGGAACCAGCCGAACTTTTTGGTAGCCT----CTCGTCCCACCG
GCGACACGCCCCTTGATTCTTTTTTGGGCGTGCATGAACCGCCGGCTTGGTGTGACACGGAGATGACTAGATGAGACCGC
CCCGGCCGGCTTTGTTCCTTGTCTACTCCGATAATAGTACCGCTGCTTTCTCAGCACCACCACCACTACTACAAAGATGG
TTAAATAAGTACGAGT--ACACTAAAGCTCTCTGATCTTATCCGGAGCGTGATTAGCGTCTGCCCAGCGAGTGAGTGCGT
GTGCTAATACGCCATTGCTCCTACAGGCTACAGTACTCTTCCGATTGTGTTTCTTTATG-GAGATCTGCTCTTCCGTGTT
TTTGTGAACTGGTCGCATGATTGATCAGTCAATGTTTCACGCCACCGCAAAATCCAAGCGGCCGTACAGCTTGTGATGCA
GC----GTGTGGGGCTGCTGAGA---TACTA---GAGCGAGCGGTTCAGCTTTGCGGAGGGGCTACAGCCGTACCGTGGC
GCCGCGTTTCGGGGTGGGGGCGCGTGACCACCCGAACGCGACCGC------AGGCCCCTGCGACGCGGCGTTCTTCTGCC
GCGCAGATGTGTCGCGGCTTTGGGAGTTCAACCCGTTTGCCGGCACGGCCAAAACGTCCAATTTCCATTTGTTTCGGGCA
GAACGTCCGATTCATTGTGCAGTGGCCGTGCTACAGCGCAGCGTAGCTTTGTGCGTGCACATGCATCAGCATATAGTATT
GTTATTGGGCTTTATTATTCATTCGTTGGGAAAAAACGAGAAGAGCGCCAAAACGTTACTAGCGACCGGTTGTTTTCTCC
TTGAAAAAAATCCCGAGCAATCGTCCAAAAAAAGGTAAGGGTGATCCTCCTCTGCATGCCACGCGTGATCCGTCTCCTCG
AGTAGATTTCATGCGTGTGATAATTT
>chr2A_1
CCTGATCCCGATCGCGTTGCCGAGACGACGGGAAACCGGAGCGCTTGTGAGGAAGGCACGAACCGGCGGGCGCGACACGG
CCAAGTGCGACCGAAACAGAAAGCCAAGACGCCTTTGCCAACTTGCACCACTCCGTGTGCCTCTGCACT----CTGGACT
GCTGACATGCGGCGCGGTGCGG-----CGACGAGAAAAGGTTTGCACCAGCCGAAAAAGGCGGAAGGCATCCTAGGTTCA
CTGTTCCTGGACCTCGCAAGAATTTGTGCGTGCTGGTGATAATATGCGACGACGGGCCATAGGCTAGCCACAATTATTTC
ATTTTATTCTTGGTTATAGCTTTCGCAAAGTATCCCGCCAAAGA--TTTTTTGAGATAT---------------------
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------------------------------------------------------------ATATATAGACACACATAATC
GGACAACGAATGAGCCCCTTGGCTTTGCGACTGCTCGGTCCAATGGCCTTGA--------------GTGATTCGGCACGG
CTAAAGCGGTGGAGGGT--------TCATGCGCCTGGTGCATGGAGCGATTT-ATCTTTGTGAGAAAGCTTGCGTGCATG
GAGCACTTGGCGAGGGAGGTCACAAGGTTCCAAAACGCGGGACGTAGCGGACGTACGTGGGCAGCCCAAGGTGCGGATCC
ACGCACACCGCAAAAGCGCGGAAAAAGAGTGGCGGAAAAACACACGAAAGCAGCCCGGACGGGGCGAACGCGAGGCGCAC
CACCCGAGCCGGCGGCCCCACGCCCACCCGCTGTCCAATCCCTCGATCCGACGGCCCGCGCTCGCACCGACCGGCCGCGG
AGACACGGAGCCGCCCCCGCACCCCTGGAGCCTGGAACCTCTTCCGCTTTACCTCAGCACGCGCGCCACTTAACCCATGA
CGGTCACCCGACCGG-CCGGCCCTGGTTAGCGCCCGGTTACCTCCCCACCCCCTCCCTCCCTCCTCGGCTGGGCTGGTTA
TATACCCCGCCCCTCCCTGGCCGTGGGCGAGGTCGGCTTCTTGATCGGGGTTGGTTGGGTGTTGTATGAGAGGGAGTGAG
CGGGCGGCGGTGTCAGCGTCAACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGCAAGGGCTGCAACGACGCCTG
CGTGCTGCGCCCCTGCCTGCTCTGGATCGAGGCCGCCGACGCGCAGGGCCACGCCACCCTCTTCGCCGCCAAGTTCTTCG
GCCGCGCCGGCCTCATGTCCTTCCTCACCGCTGTCCCCGAGCAGCAGCGCCCAGGTACGTACGGACGGAAGGGAGATCGA
TGGTCTTCTTCTTGGCACGACGGTTCATCGGTAG--CACTATATATGTTGATCTTCTTTGGCTGATGTTTGCATGGTGTT
TGCTGTGGGTTGCAGCCGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGCGGACGATCAACCCGGTGAGCGGCGCGGTG
GGGCTGCTCTGGGCGGGGAGCTGGCACCTCTGCGAGGCGGCGGTCCAGACCGTGCTCCGGGGCGGCGCCATCCGCCCGCT
GCCGGAGCTCGCGGGCGGCGTCCCGGAAGGCGGCGTCGGTGGCAGCGATCTGTTCGCCTCCTCTTCCAGGCGGGCCGTGG
TGGGGTGCTCCACGTATTCGGCGGCGAAGCGGGTAACGCCGAGGAAGACCTGGGCGCCGGAGGCCGCGTCCCAGCACCAG
GAGCCCCCGTGCGACCTCGGGCTTTTCCTCACCCCCGGATCGGCCGCCGCGGCGGAGGGGGAGCGACGGGTGAGGCGTGC
CGGCACGCCGTCGATGAGCTCCGACGGCTCCGTGACCACGAGCGCCGGCGC---------C------GGCGAGAAGGAGC
CGGAGCTGCTGAATCTTTTTGTTTAA-TGAAGCTAGTTATTAATCTGCGCGTTCATTCACCGTAGTAGTACCGCGCGATC
GACCGATCGATCGATGCGCTGCTCGCTCGCTGGCGCTGGAACCAGCTGAACTTTTTGGTAGCCTCCCTCTCGTCCCACCG
GCGACGCGCCCCTTGATTCTTTTTTGGGCGTGCATGAACCGCCGGCTCGGTGTGACACGGAGATGACTAGATGAGACCGC
CCCGGCCGGCTTTGTTCCTTGTCTACTCCGATAATAGTACCGCTGCTTTCTAAGCACCACCACTACTGCTACAAAGATGG
TTAAATAAGTAAGGGTGCACACTAAAGCTCTCGC-TCTTATCCGGAGGGTGATTAGCGTCTGCCCAGCGAGTGAGTGCGT
GTGCTAATACGCCATCGCTTGCTC---CTACAGTACTCTCCCGATTGTGTTTCTTTTTG-GAGATCTGCTCGTCCGTGTT
TTTGTGAACTGGTCGCATGATTGATCAGTCAATGTTTCACGCCACCGCAAAATCCAAGCGGCCGTACAGCTTGTGATGCA
GTGTGGGTGTGGGGTTGCTGAGATAGTACTACTGGAGCGAGCGGTTCAGCTTTGCGCAGGGGCTACAGCCGTACCGTGGC
GCCGCGTTTCGGGGTGGGGGCGCGTGACCACCCGAACGCGACCGCAGGCACAGGCCCCTGCGACGCGGCGTTCTTCTGCC
GCGCAGATGTGTCGCGGCTTTGGGAGTTCAACCCGTTTGCCGGCACGACAAAAACGTCCAATTTCCATTTGTTTCGGGCA
GAACGTCCGATTTGTTGTGCAGTGGCCGTGCTACAGCACAGCGTAGCTTTGCGCCTACACATGAATCAGC----------
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>chr2B_1
CCTGATTCCGATCGCGTTGCCGAGACGACGGGAAACCGGAGCGTTTGTGAGGAAGGCACGAACCG----GCGCGACACGG
CCAAGTGCGACCGAAACAGAAAGCCAAGATGCCTTTGCCAACTTGCACCACTCCGTGTGCCACTGCACTCTGGCTGGACT
GCTGACATGCGGCGCGGTGCGG-----CGACGAGAAAAGGTTTGCACCAGCC-AAAAAGGCGGAAGGCATCCTAGGTTCA
CTGTTCCTGGACCTCACACGAATTTGTGCGTGCTGGTGATAATATGCGACGACGGGCCATAGGCTAGGCACAATTATTTC
ATTT-ATTCTTGGTTATAGCTTTCGCAAGGTATCCCGTCAAGATTTTTTTTTGAGATAATGCACGCCCACTTTTTTGTAG
GAACGGGCGGCCGGGCTGGTTACTTACATGTGTGTCTTTTTTTGTCAGCTAGTGAATGTTTTTTGTTAGCATTAAATGCG
TACGGACTAGTCCTGGAAACAGATTCACGCACATTTATTTTGGCCACTTTAATTTTTAAAAAGTCGTATCTTTTAAACCA
CACGTCGGAATTCAGATCCGTCTTCACCGTTGGATTCATCGCGACGAGATCTTCGAAACTAGATCCCGCATGGATATGTT
TCGACGAAATTTTTTTGTTGCCAACTTTGGCGCTGTATTGTGCAACTTCAGTACTGCTTTGTGCAACTTTAGTACTGCAT
GGTGCAATTTTTTTCAAACCCAGTTTTTTGAAACTGCATCCTCAATAGTTGTCGTTGCACACATAGTAGTCCTAGTTGGC
ACATACATGGCCACATAGTTGCATAATCTGGTCCGCATAGTCGCATATGAATTATCATAGCTTGTAATGTAGTCTAGTTG
CACACACATTGATGTTTAGTTGGCTTGTAACGTAGTCTAGTTGCGCACACATTGATGTTTAGTTGGCAGGAAGACTAGTT
GCACACACATATGCTTAGTTGGCTTGTAATATAATCTAGTTGCACACACATTGATGTTTAGTTGGCAGGACACTAGTTGC
ACACGCATTAATATTTAGTTGGCATGACTAGTTACACACACATATACTCAGTTGGCACGGCAATGTAGTCTAGTTGCATA
ATGCAGTACTATAGTTGCACCATATAGCACCAAAGTTAGCATCAAAAAAAATTCGTCGAAACATACCCATATGGGATCTA
GTTTCGAAGATCTCGTCGCGACGAACCCAAAGGTGAAAACGGATCTGAATTCCAACATGTGGTTTAAAAGATATGACTTT
TTAAAGATTTAAGAGACGAAAATAAATGTGTTTCACGGACCAGTCTGTACGCATTTGCTATACGCATTTAATGCTAATAA
AAACATCCATTAACTAACAGAAAAAGACACACAATAGATAATTGCTATTTATAAATTATTAGAGGACCAAAACTTGTAAT
TTTGGGCCGGCCGCTCGCAAAGTATAGTGAGCAGCCGGCCGCTCGCTAGACCGGTCCAAAATATATATGCACACATAATC
GTACAACAAATGAGCCCCTTGGCTTTGCGACTGCTCGGTCCAATGGCCTTGATGCTGCACCGGCGAGTGATTCGGCACAC
CAAAAGCGGTGGAGGGT--------CCATGCGCCGGATGCATGGAGCGATTT-ATTTTTGTGAGAAAGCTTGTGTGCATG
GAGCACTTGCCGAGGGAGGTCACAAGGTTCCAAAACGCAGGACGTACCGGACGTACGTGGGCAGCCCAAGGTGCGGATCC
ACGCACACCGCAAAAGCGCGGAAAAAGAGTGGCGGAAAAACACACGAAAGCAGCCCGGACGGGGCGAACGCGAGGCGCAC
CACCCGAGCCGGCGGCC-----CCCACCCGCTGTCCAATCCCTCGATCCGACGGCCCGCGCTCGCACCGACCGGCCGCGG
AGACACGGAGCCGCCCCCGCACCCCTGGAGCCTGGAACCTCTTCCGCTTTACCTCAGCACGCGCGCCAGTTAACCCATCA
CGGTCACCCGACCGGCCCGGCCCTGGTTAGCGCCCGGTTACCTCCCCACCCC-TCCCTCCCTCCTCGC-----CTGGTTA
TATACACCGCCCCTGCGTGGCCGTGGGCGAGGTCGGCTTCTTGATCGGGGTTGGCTGGCTGTTGTATGAGAGGGAGTGAG
CGGGCGGCGGTGTCAGCGTCAACGTCGGGGATGAGCTGCAACGGGTGCCGCGTGCTGCGCAAGGGGTGCAACGAGGCCTG
CGTGCTGCGCCCGTGCCTGCTCTGGATCGAGGCAGCCGACGCGCAGGGCCACGCCACCCTCTTCGCCGCCAAGTTCTTCG
GCCGCGCCGGCCTCATGTCCTTCCTCACCGCTGTCCCCGAGCAGCAGCGCCCAGGTACGTACGGACGGACGGGAGATCGA
TGGTCTTCTT---GGCACGACTATGCATCGGCAGTACAGAATATGTGTTGACCTTTTTTGGCTGAAGTTTGCATGCTGTT
TGCTGTGGATTGCAGCCGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGCGAACGATCAACCCGGTGAGCGGCGCGGTG
GGGCTGCTCTGGGCGGGAAGCTGGCACCTGTGCGAGGCGGCGGTCCAGACCGTGCTCCGGGGCGGCGCCATCCGCCCGCT
GCCGGAGCTCGCGGGCGGCGTCCCGGAAGGCGGAGTCGGTGGAAGCGATCTGTTCGCCTCCTCTTCCAGGCGGGCCGTGG
TGGGGTGCTCCACGTATTCGGCGGCGAAGCGGGTGACGCCGAGGAAGACATGGGCGCCGGAGGCAGCGTCCCACCACCAG
GAGCCCTCGTGCGACCTGGGGCTTTTCCTCACCCCCGGATCGGCCGCGGCGGCGGAGGGGGAGCGACGGGCGAGGCGGGC
CGGCACGCCGTCGATGAGCTCCGACGGCTCCGTGACCACGAGCGCTGGCGCAGGCGCCGGC------GGCGAGAAGGAGC
CGGAGCTGCTGAATCTTTTTGTTTAAATGAAGCTAGTTATTAATCTGCGCGTTCATTTACCGTAGTAGTACCGCGCGATC
GATCAGTCGATCGACGCGCTGCTCGCTCGCTGGAGCTGGAACCAGCTGAACTTTTTGGTAGCCT----ATCGTCCCACCG
GCGACGCGCCCCTTGATTCTTTTTTGGGCGTGCATGAACCGCCGGCTTGGTGTGACACGGAGATGACTAGATGAGACCGC
CCCGGCCGGCTTTGTTCCTTGTCTACTCCGATAATAGTACCGCTGCTTTCTTAGCACCACCACTACTACTACAAAGATGG
TTAAATAAGTAAGAGT--ACACTAAAGCTCTCTGATCTTATCCGGGGCGTGATTAGCGTTTGCCCAGC----GAGTGCGT
GTGCTAAGACGCCATTGCTCCTGCAGGCTACAGTACTCTCCCGATTGTGTTTCTTTTTTTGAGATCTGCTCTTCCGTGTT
TTTGTGAACTGGTCGTATGATTGATCGGTCAATGTTTCACGCCACCGCAAAATCCAAGCGGCCGTACAGCTTGTGATGCA
GC----ATGTGGGGCTGCTGAGATAGTACTA---GAGCGAGCGGTTCAGCTTTGCGGAGGGGCTACAGCCGTACCGTGGC
GCCGCGTTTCGGGGTGGGGGCGCGTGACGACCCGAACGCGACCG------CAGGCCCCTGCGACGCGGCGTTCTTCTGCC
GCGCAGATGTGTCGCGGCTTTGGGAGTTCAACCCGTTTGCCGGCACGGCCAAAACGTCCAATTTCCATTTGTTTCGGGCA
GAACGTCCGATTCATTGTGCAGTGGCCGTGCTACAGCGCAGCGTAGCTTTGTGCGTGCACATGCATCAGCATATA-----
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>SNPs
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---------------------------------S---S------------------------------------------
----------------------SSSSS-----------------------------------------------------
---------------------------------S----------------------------------S-----------
--------------------------S-------------S--------SSS----------------------------
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-----------------------------------------------------------------S---S--------S-
------------------------------------------S---------------------------------S---
-----------------SSSSSSSS----------------------S----S---------------S-----------
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----------------------S---------------------------------------------------------
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----------------------------------------------S-------S-------------------------
------------------------------------S-------------------------------------------
---------------S----------------------------------------------------------------
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------------------------------------------------------------S-------------------
-------------------------------------------------------------------------S--S---
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--------------------------------------------------------S-----------------------
-------------S------------------------------------------------------------------
-----------------------------------------------------------------S-----S--------
-------------------------------------------------------------SSSSSS-------------
-S------------------------------------------------------------------------------
----------------S-----------------------------S---------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------------S-----------S----------------
-----------S--------------------------------------------------------------------
----------------------S----------------S----------------S-----------------------
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---------------------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_114
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--------------AACAGAAAGCCAAGATGCCC----------------------------------------------
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>reverse_3252
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---------------------------------------------------CAGCACCACCACCACTACTA---------
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