>input_sequence_67257
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-------------------------------------------------------------ATGCTGACAAACTT--GGC
GTTCATGTACAAGGGACACAAGATAAATATTGAGTACAAATATGCACCATTTCTTGATACACTCCGTGTTCATTTCACAA
AGAAGAATCAATGCCCTCTAGACTTCATAAGTGCGCTTCCTAAGCTTCCTAAGCTGGAAACGTTGATCTTGCAATTTTCT
GGGCCTGTACAAGTACGTAAGATTTCTGCCCCTCGGTTTGCATGAGCATATTTAGACAATGTCTACATGCTGAATTCAAC
--TTCTTTTTTCTTGGACTCCCTCCAGGTATCCCGTGCGCTGCGGCACACTTTCAGGTTTGCTAATTTCAAGATGATCGT
CTTCTTTCTGGTGAAATCTTGGAAAGAGTGCATTTGCTCGCTTGCGTATCTCCTTAAAGCAGCTCCATCACTCGAATACT
TCGGGGTGCATGTATGCTGTGCACTTGTGATTTCTACACGCTTTGCA-TCAGAACATGCCAACAG-CTGTTTACCTCTCT
ATGCTTTTTCTCATGTTAGCCAGCTTATCCATGCAGGGGTTTTCCAAGCTGAAGGAACAACCTAGTGAGCTCAACGTGAC
ATGGCCCGAGGATCTGACTTTCGCGAGGCTCCACATTATCGTGATCAAAGGGTTTAGCGGGGAACCGGAACTGATGGAGC
TCCTCTACTTTCTGCTGAGAAGGGCGCCCGCCCTGGAGAGCTTGCAACTCGAGACGCGTGCATATGAGCCATTT------
---GTCTTCAGGAAGGAGAAGCACAAGTCGGAAGACGAAGAAAGGTGCCGTTACGCTACCGAGATGGCCTCGACCCACCT
GGCTCCTAAGGTTCCGTCCACCGTGGCGTTCAGCATCACCTGA-------------------------------------
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>chr6D_1_TraesCS6D01G373500
TGGAAAGTGGTTTACTCAGAAAAAGGGGCACTTTTTTATGTTTGTTTACACTTATCTTTTCGTAAATGTTGTTTACAATT
ATCTGCAAGTTCGAACCATAAATTAGCAAGGAAACTAAAATCATGTTGTTAATTTTGCTCAATGGACAGTGTAATCAAGC
CCTGACACCCATGATATCATCGCTTTTCTGTGGTA---AAATAAGTTGTAAAATGTC---ATGTTTACATGGTTTCTAAT
TTTA---TACCTAACATGCCATTTCTTCTGCAGAACTGTGATTGGATCAGTACATTGCCAGATGACATTTTAGTCAAAAT
TCTTTCCTTACTGACAGTAAGCGATGCTGCAATGACCGACTGTCTTTCCTCTAGATGGAGACACCTCTGGAAAAACGTTG
ACTGTCTCATCCTTGACCTCTATAGTCTCAGGATGCCAGAGTCAGAAATCTGTGATTACCATCAAAAACCATGTCTGCGG
AAAGCTCAAGTAAAAAAGTTTGTTCGCAAAACGAATGGGCTTTTGCGCAATCATTATGGCAATAAAATCAAGGAATTCAC
TGTCAGATTCCCATTAACCTCAGCCAATGCTTCTGAGCTGGACCACTGGATTCGGTTTGCAGCTTCAGCCTCTACGGAAA
AGCTCTGCCTTGACCTTTATGAGAAGAATCGCTCAAGTTGCCTTGACCT------------TTCCCGTAATGAGCCGTAT
AACTTCATATTATCACCATTTTCTGATGGGAGAGGTTGCCGGTTGAGCGAGTTGACTCTATCCAACTGCACTGTACGAAC
AACACCTGCAAATCTCAGTGGCTTTGCTTGTCTCCATTTCCTTGAACTCAGTCGTGTGAAAATAGCTGATGCAGCTGTTT
CGAATATTATTTCCAACTGTTGTGCTCTCAAAAGCTTGATTCTAGCGTTCTGCCATCAATTGATTCATTTGACGGCTACT
TGTTCACAATTGCTGAAGTTGGATGTCGACTTCTGCGATGGCTTAATTAGTGTTTGTATTCATGCTGACAAACTT--GGC
GTTCATGTACAAGGGACACAAGATAAATATTGAGTACAAATATGCACCATTTCTTGATACACTCCGTGTTCATTTCACAA
AGAAGAATCAATGCCCTCTAGACTTCATAAGTGCGCTTCCTAAGCTTCCTAAGCTGGAAACGTTGATCTTGCAATTTTCT
GGGCCTGTACAAGTACGTAAGATTTCTGCCCCTCGGTTTGCATGAGCATATTTAGACAATGTCTACATGCTGAATTCAAC
--TTCTTTTTTCTTGGACTCCCTCCAGGTATCCCGTGCGCTGCGGCACACTTTCAGGTTTGCTAATTTCAAGATGATCGT
CTTCTTTCTGGTGAAATCTTGGAAAGAGTGCATTTGCTCGCTTGCGTATCTCCTTAAAGCAGCTCCATCACTCGAATACT
TCGGGGTGCATGTATGCTGTGCACTTGTGATTTCTACACGCTTTGCA-TCAGAACATGCCAACAG-CTGTTTACCTCTCT
ATGCTTTTTCTCATGTTAGCCAGCTTATCCATGCAGGGGTTTTCCAAGCTGAAGGAACAACCTAGTGAGCTCAACGTGAC
ATGGCCCGAGGATCTGACTTTCGCGAGGCTCCACATTATCGTGATCAAAGGGTTTAGCGGGGAACCGGAACTGATGGAGC
TCCTCTACTTTCTGCTGAGAAGGGCGCCCGCCCTGGAGAGCTTGCAACTCGAGACGCGTGCATATGAGCCATTT------
---GTCTTCAGGAAGGAGAAGCACAAGTCGGAAGACGAAGAAAGGTGCCGTTACGCTACCGAGATGGCCTCGACCCACCT
GGCTCCTAAGGTTCCGTCCACCGTGGCGTTCAGCATCACCTGACCCTTCCGTGCTCGCTGAAAAAGGCCGCGGCTGCTGC
AGGTCATCAGCGAACGACGAAG----GTACTACCTTGAGCTTGTCACGTGTTATGATGACTAGTAGACTGCCCGTGCGTT
GCCACGGGCATGTCAACTTTAACATGGATTGAAAAAATAGCCAATAACAAAAAATAATAATTAAAATCCACTTCACTTGC
AATATATTTTGATAAAAAA--ATTGAAACATTGAACTCTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CCTTTATTATTTATGCTTAAGATTCGATCATCTCACGAAAG-----CATGTGTATTGTTATTATCCATTAATTAAAGACA
AACACATGGAGTACTGTGTTCCCTTTAAACAAATCTGCAAACCCCCAAACCTAGAACATAAGTGGGGACGTGTCCTGATG
TG----------------------------CTCATTGTGTGGCAATATAAAATGTCC-GGAAAAAATACAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGA----ACTACTTCATTAATACCTACCATCATTCCAAATAACCTGAAAAACCAGAGGTAA
AAGACTATACAAATAAAAATTTCAGTTGAGTTGAAAGGCTCAAACTAATAGCCAACAAATATTTGCAAGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCGTATTACCAGTTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTAC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGGTTTGTTCAA
CGAAACAGATTGGCTCTGCTTACACTAAGTCTAAGTTCATCATCATTC
>chr6B_1
TGGGAAGTGGTTTACTCAGAAAAAGGGGCTCTTGTTTATGTCTGTTTACGCTTATCTTTTTGTAAATGTTGTTTAAAATT
ATCTGTAAGTTCGAACCATAGATTAGCGAGGAAACTAAAATCATGTTGTTAATTTTGCTCAATGGACAGTGTAATCAAGC
CCTGGCACCCATGATATTATCGCTTTTCTGTGGTA---AAATAAGTTGTAAAATGTC---ATCTTAACATGGTTTCTAAC
TTTA---TACCTAACATGTCATTTCTTCTGCAGAGCTGTGATTGGATCAGTATATTGCCAGATGACATTTTAGTCAAAAT
TCTTTCCTTACTGACAGTAAGCGATGCTGCAATGACTGACTCTCTTTCCACTAGATGGAGACACCTCTGGAAAAACGTTG
ACTGTCTCATCCTTGACCTCTATACTCTCAGGATGCCAGAGTCAGAAATCTGTTATTGCCATCAAAAACCATGTCTGCGG
AAAGCTCAAGTAAAAAAGTTTGTTCGCAAAACGAATGGCTTTTTGCGCAATCATCATGGCAATAGAATCAAGGAATTCAC
TGTCAGATTCCCATTAACCTCAGTCAATGCTTCTGATCTGGACCACTGGATTGGGTTTGCAGCTTCAGCCTCTACGGAAA
AGCTCTGCCTTGACCTTTATGACATGAATCGCTCAAGTTGCCTTGACAT------------TTCCCCTAATGAGCCGTAT
AACTTCATATTATCACCATTTTCTGATGGGAGAGGTTGCCGGTTGAGCGAGTTGACTCTATCCAACTGCACTGTACGAAC
AACACCTGCAAATCTCAGTGGCTTTGCTTGTCTCCATTTCCTTGAACTCAGTCGTGTGGAAATAGCTGATGCAACTGTTT
CGAATATTATTTCCAACTGTTGTGCTCTCAAAAGCTTGATTCTAGCGTTCTGCGATCAATTGATTCATTTGACGGTTACT
TGTTCACAATTGCTGAATTTGGATGTTGATTTCTGCGATGGCTTAATTAGTGTTTGTATTCATGCTGACAATCTTGAGGC
GTTCATGTACAAGGGACACAAGATAAATATTGAGTACAAATATGCAACATTTCTTGATACACTCCGTGTTCATTTCATAA
TGAAGAATCAATGTCCTCTAGACTTCATAAGTGCGCTTCCTAAGCTTCCAAAGCTGGAAACGTTGATCTTGCAATTTTCT
GGGCCTGTACAAGTACGTAAGATTTCTGCCC-TCGGTTTGCAGGAGCATATTTAGACAATGTCTACATGCTGAATTCAGC
TCC---TTTTTTTTGGACTCCCTCCAGGTATCCCGTGCGCTGCGGCACACTTTCAGGTTTGCTAATTTGAAGATGATCGT
CTTCTTTCTGGTGAAATCTTGGAAAGAGTGCATTTGCTCGCTTGCGTATCTCCTTAAAGCAGCTCCGTCACTCGAATACT
TCGGGGTGCATGTATGCTGTGCACTTGTTATTTCTACAAACTTTGCACTCATAACAAGTCAACAG-CTGTTTACCTGTCT
GTCCTTTCTCTCATGTTAGTCAACTTATCCATGCAGGGGTTTTCCAAGCTGAAGGAACAACCTAGTGAGCTCAACATGAC
GTGGCCTGAGGATCTGACTTTCGTGAGGCTCCACATTATCGTGGTCAAAGGGTTTAGCGGGGAGCCGGAACTGATGGAGC
TCCTCTACTTTCTGCTGAGAAGGGCGCCCGCACTGAAGAGCTTGCAACTCGAGACGCGTGCATATGAGCCATTT------
---TTATTCAGGAAGGAGAAGCACAAGTCGGAAGACGAAGAAAGGTGCCGTTACGCTACGGAGATGGCCTCGACCCACCT
GGCTCCTAAGGTTCCCTCCACCGTGGCGTTCAGCATCACCTGACCCTTCCGTGCTCGCTGAAAAACGCCGCGGCTGCTGC
AGGTCATCAGCGAACCATGAAGGTACGTACTACCCTGAGCTTCTCACATGTTATGATG----------------------
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>chr6B_1
TGGAAACTGGTTTACTCAGAAAAAGGGGCTCTTTTTTATGTTTGTTTACACTTATCTTTTCGGAAATGTTGTTTACAATT
ATCTGTAAGTTCGAAGCGTAGATTAGCGAGGAAACTAAAAGCATTTTGTTAATTTTGCTCAATGGAAAGTGTAATCAAGC
CCTGACACCAATTATATTATCGCTTTTCTGTAGTA---ACATAAGTTATAAAATGTC---ATCTTAACATGGTTTCTAAT
TTTA---TACCTAACATGTCATTTCTTCTGCAGAATTGTGATTGGATCAGTACATTGCCAGATGACATTTTAATCAGCAT
TCTTTCGCTACTGACTGTAAGCGAAGCTGGAATGACTAGCTGTCTTTCCACCAGATGGAGACACCTCTGGAAAAACGTTG
ACAGTCTCATCCTTAATGCCCATAATCTCAGGATGCAAATGCTAGAGCTCTCAAGTTACCATGAAAATCCACATATGTGG
ACAGATGAAGCTACAAAGTTTGTTCACAAAGTAAATGGGCTTTTACAGAATCATTATGGCAACAGAATCAAGGAATTGAC
TGTCAGATTCCCGTTAACTTCAGCCAATGCTTCTGAGCTGAACCATTGGATTTGGTTTGCAGCTTTAGCCTCTACAGAAA
AGCTCTCCCTCGACCTTTATGACAAGAATCGCTTGAGTTTCCTTGACCT------------TG------ATGAGCCGTAT
AACTTCATATTATCACCATTTGCCAATGGGAGAGACTGCCGGTTGGGCGAGTTAACTCTGTCCAAATGCAGTTTACGAAC
AATGCCTGAAAATCTTAGTGCCTTTTCATGCCTTCATTTCCTT-------------------------------------
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>chr6A_1
TGGAAAGTGGTTTAGTTAGAAAAAGGGGCTCTTTTTTATGTTTGTTTACACTTATCTTTTTGGAAATGTTGTTTACAATT
ATCTGTAAGTTCGAAGTGTAGATTAGCGAGGAAACTAATAGCATGTTGTTAATTTTGCTCAATGGACAGTGTAATCAAGC
CCTGACACCCATGATATTAACGTTT-TCTGTGGTA---AAATAAGTTGTAAAATGTT---ATCTTAACATGGTTTCTAAT
TTTA---TACCTAACATGTCATTTCTTCTGCAGAACTGTGATTGGATCAGTACATTGCCAGATGACATTTTAATCAAAAT
TCTTTCCCTGCTGACAGTAAGCGATGCTGCAATGACTGACTGTCTTTCCACTAGATGGAGACACCTCTGGAAAAACGTTG
ACTGTCTCATCTTTGACCTCTATAGTCTCAGGATGCCAGAGTCAGAAATCTGTTATTACCATCAAAAACCATGTCTGCGG
AAAGCTCAAGTAACAAAGTTTGTTCGCAAAACGAATGGCTTTTTGCGCAATCATTATGGCAATAGAATCAAGGAATTCAC
TATCAGATTCCCATTAACCTCAGTCAATGCTTCTGAGCTGGACCACTGGATTCGGTTTGCAGCTTCAGCCTCTACAGAAA
AACTCTGTCTTGACTTTTATGACAAGAATCGCTCGAGTTGCCTTGACATT------TTCCCTG------ATGAGCCTTAT
AACTTCATATTATCACCATTTTCAAATGGGAGAGGTTGCCAGTTGGGCGAGCTAACTCTGTCCAACTGCAGTTTAGGAAC
AACGCCTGAAAATCTCAGTGGCTTTGCTTGTCTTCATTTCCTTAAACTCAGCCGTGTGTCATTAGCTGATGCAGCTGTTT
CAAATATTATTTCCAGTTGCTGTGCTCTCCGAAGCTTGATTATAGAGTTCTGCGATCAATTGTTTCATTTGACGATTACT
TGTTCACAATTGCTGAATTTGAATGTTGAATTCTGCAATGACTTAAGTAGTGTCTGTATTCATGCTGACAATCTTGACAA
GTTCGCGTACAAGGGACACAATGTAAATATCGAGTACAAATATGCACCATTTCTTGATATAATCCGTGTTTATTTCACGG
AGATGGATGAATGCCCTCTAGACTTCATAAGTGCGCTTCCTAAGCTTCCAAAGTTGGAAACGTTGATCTTGCAATGTCCT
GCGCCTGTACAAGTACGTAAGATTTCTGCCCCTTGGTATGCATGATGGTCTTTAGAAACTGTCTACATGCTGAATTCAAG
TC----TTCTTCTTGGTCTCCCTCCAGGTACCTCGTGCGCTGCGGCACACTTTCAGGTTTACTAATTTGAAGATGATCGT
CTTCTTTCTGCTGAAATCTTGGAAAGAGTGCATTTGCTCGCTTGCGTATCTCCTTAAAGCAGCTCCGTTACTCGAATACT
TCGGGGTGCATGTAAGCTGTGCACTTGTGATTTCTACACACTTTGCA-TCAGAACATGCCAACAG-TTGTGTACCTTTCG
ATGTTCTTTCTCATGTTAACCAGCTTATCCATGCAGGGGTTTTCCAAGCTTAAGGAACAACCTAATGAGCTCAACATGAC
ATGGCCTGAGGATTTGACATTTGCGAGGCTCCACATTATCGTAATCAAAGGGTTTAGCGGGGAACCGGAACTGATGGAGC
TCCTCTACTTTCTGCTGAGAAGGGCGCCCGCACTGAAGAGCTTGCAAGTCGAGACGCGTGCATATGAGCCATTT------
---TTCGTCAGGAAGGAGAAGCACAAGTCGGAAGACCAAGAAAGGTGCCGTTACGCTACGGAGATGGCCTCGACCCACCT
GGCTCCTAAGGTTCCATCCACCGTGGCGTTCAGCATCACCTGACCCTTCCGTGCTTGCTGAAAAACGCCGCGGCTGTTGC
AGGTCATCAGTGAACGACGAA-----------------------------------------------------------
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>chr6A_66
ATGTTT----------------------------------------------------------------GTTTTCATTC
ATCTGTAAGTTAGAAATGTAGATTAGTGAGTAAAGAAAATGTATGTTGTTAATTTTTAGCAATGGACAGTGTAACCAAGC
CCTGCCGCACATGATATCATCGCTTTTCTATGGTTATTAAATAAGTTGTAAGATGTGACGATGGTAGCATGCTTTCTAAT
TTCATACTACCTACCATGTCATTTCTTCTGCAGAACTGTGATTGGATCAGTACATTGCCAGATGACATTTTAATCAAAAT
TCTTTCCCTACTGACAATAAGCGATGCTGCAATGACTGGCTGTGTTTCCACCAGATGGAGACACCTCTGGAAGAACGTCG
ACAGTCTCATCCTTGATGCCCATAATCTCAGGATGCAAGAGCCAGAGCTCTCAAATTACCTTGAAGATCTGCATTTGTGG
AAAGCTGAAGCTACAAAGTTTGTTCAGATA-TAAATGGGCTTTTGCACAATCATAATGGCGATAGAATCAAGGAATTTAC
TGTCAGATTCCCATTGACCTCAGCCAATGTTTCTGAGGTGGGCCACTGGATTCGGTTTGCAGCTTCAGCCTGTACGGAAA
AGCTCTGCCTTGACCTTGATGACAAGGATCGCTCGATTTGTCTGAGAGGCTGGAAGTTCGCTT------CAGAGCCGTAT
GACTTCCTTTTGTCGCCATTTTCTAATGGGAGAGGCTGTCGGTTGAGCGAGTTGACTCTGTCCAATTGCGGTTTAGGAAC
AACGCCTGAAAATCTTAGTTGCTTTCCATGCCTTCACTCCCTTACACTCGGACGTGTTTCAGTAACTGATACATATGTTT
CAAATATTAT----------------------------------------------------------------------
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>chr6B_877
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-----------------TGTTGTGCTCTCAAGACTGTGACACTAGAATACTGCCATGAATTGATTTGTTTGACGATTGCT
CAACCACAACTGTTGACGTTGGTTGTTATTAACTGCAATAGCTTAATTAGTGTCTGTATTAAAGCTGATGCCCTTGAGTA
TTTGGAGTACATGGGGCACAAGGTAATTATTGAGTATGAATATGCACCATTTCTTCATCTACTCCGTGTTTGTTATATGG
AGAAGAATGGATGCCCTTTAGACTTCATAAGCGCACTTCCTAAGCTTCCAAAGCTGGAAGGGCTGATCTTGCGGTGTCCT
GCGCCAGTACAAGTATGTAATATTTCTACCCCTTGGTTTGCATGACCATTTTTGGAAACTGTCTACATGCTGAATTATCT
CTTTCTTTTTTTACTCTTACT----AGGTAGCCCGTGCGCTGCAGAACATTTTCAGGTTTGCTAATCTAAAGACAATCGT
ATTCTTTCTCGTGAGATCTTGGAAAGGGAGCATTTGCTCGCTTGCCTATCTCCTTAAAGAAACTCCCTTGCTCGAGTATT
TTTGGCTACATGTAAGCTGCGCACTTGTTATTTCTACACACTTTGCA-TCCGAACATGTCAAGAATTTTTTTACCTTTCC
ATGCTTGTTCTCATATTAGCCAGCTTATCCATGCAGGGTTTCGGCAAGCTCAAGG---AACCTAGTGAGCTCAACATGAC
ATGGCCCGAGGATCTGACGTTTGCGAGGCTCCACAATATCACAATCAAAGGGTTTAGCGGGGAATCGGAGCTGATGGAGC
TCCTCTACTTTATGCTGACAAGGGCGCCCGTGCTGGAGACGTTGGAACTTGAGACGCCCGTGCTGGAGAAGTTGGAAGCA
TGGTTCGTCAGGAAGAAGAAGCACAAGTTGCAAGACGAAGAGAGGTGCCGTTACGCGAGAGAGATGGCCTTGACACATCT
GGCTCCTAAGGTTCCATCCACCGTGGCGTTCAGCATCACCTGACC-TTCCACGCTTGCTGAAAAATGACGCGTCTGTTCT
AGATCATCAGCGAATGACGGAG----GTACTACCTTGAGCTTATCACATGTTATGATG----------------------
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>chr5D_1929
TGTTAATA------------------------------------------------------------------------
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-------------------------------------------------------ATAACTAGTAGACTGCCCATGCATT
GCCACGGGCATGTCAACTTTAACATGGATTGAAAAAATAGCCAATAACAAAAAATAATAATTAAAAACCACTTCACTTGC
AATATATTTTGATAAAAAA--ATTGAAACATTGAACTCTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CTTTTATTATTTATGCTTAAGATTCGATCATCTCACGAAAG-----CATGTGTATTGTTATTATCCATTAATTAAAGACA
AACACATGGAGTACTGTGTTCCCTTTAAACAAATCTGCAAGCCCCCAAACCTAGAACATAAGTGGGGACGTGTCCTGACA
GCACATCATGCCAGACCAGAACTTTCAACTCTCATTGTGTGGCAATATAAAATGTCC-G-AAAAAATACAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGA----ACTACTTCATTAATACCTACCATCATTCCAAATAACCTGAAAAACCAGAGGTAA
AAGACTATACAAATAAAAATTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATTTGCAAGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAGTTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTAC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGGTTTGTTCAA
CGAAACAGATTGGCTCTGCTTACACTAAGTCTAAGTTCATCATCATTC
>chr4D_1932
TATAT---------------------------------------------------------------------------
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----------------------------------------------------------ACTAGTAGACTGCCCGTGCGTT
GCCACGGGCATGTCAACTTTAACATGGATTGAAAAAATAGCCAATAA----AAATAATAATTAAAATCCACTTCACTTGC
AATATATTTTGATAAAAAA--ATTGAAACATTGAACTTTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CCTTTATTATTTATGCTTAAGATTCGATCATCTCACGAAAG-----CATGTGTATTGTTATTATCCATTAATTAAAGACA
AACACATGGAGTACTGTGTTCCCTTTAAACAAATCTGCAAACCCCCAAACCTAGAACATAAGTGGGGACGTGTCCTGACA
GCACATCATGCCAGACCAGAACTTTCAACTCTCATTGTGTGGCAATATAAAATGTCC-GAAAAAAATACAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGA----ACTACTTCATTAATACCTACCATCATTCCAAATAACCTGAAAAACCAGAGGTAA
AAGACTATACAAATAAAAATTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATATGCAAGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAGTTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTAC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTATGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGGTTTGTTCAA
CGAAACAGATTGGCTCTGCTTACACTAAGTCTAAGTTCATCATCATTC
>chr4D_1939
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----------------------------------------------------------ACTAGTAGACTGCCCGTGCGTT
GCCACGGGCATGTCAACTTTAACATGGATTGAAAAAATAGCCAATAACAAATAATAATAATTAAAATCCACTTCACTTGC
AATATATTTTGAT-AAAAA--ATTGAAACATTGAACTCTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CCTTTATTATTTATGCTTAAGATTCGATCATCTCACGAAAG-----CATGTGTATTGTTATTATCCATTAATTAAAGACA
AACACATGGAGTACTGTGTTCCCTTTAAACAAATCTGCAAACCCCCAAACCTAGAACATAAGTGGGGACGTGTCCTGACA
GCACATCATGCCAGACCAGAACTTTCAACTCTCATTGTGTGGCAATATAAAATGTCC-GAAAAAAATACAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTCAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGA----ACTACGTCATTAATACCTACCATCATTCCAAATAACCTGAAAAACCAGAGGTAA
AAGACTATACAAATAAAAATTTCATTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATTTGCAAGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAGTCATATTACCAGTTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAA--CCTTTGATTGTAATAGATGTGAAAAATACTAC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGGTTTGTTCAA
CGAAACAGATTGGCTCTGCTTACACTAAGTCTAAGTTCATCATCATTC
>chr7D_1939
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----------------------------------------------------------ACTAGTAGACTGCCCGTGTGTT
GCCACGGGCATGTCAACTTTAACATGGATTGAAAAAATAGCCAATAA----AA--AAAAATTAAAATCCACTTCACTTGC
AATATATTTTGAT-AAAAAAAATTGAAACATTGAACTCTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CCTTTATTATTTATGCTTAAGATTCGATCATCTCACGAAAGGAAAGCATGTGTATTGTTATTATCCATTAATTAAAGACA
AACACATGGAGTACTGTGTTCCCTTTAAACAAATATGCAAACCCCCAAACCTAGAACATAAGTGGGGACGTGTCCTGATA
GCACATCATGCCAGACCAGAACTTTCAACTCTTATCGTGTGGCAATATAAAATGTCC-G-AAAAAATACAGCTCTATGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAGTCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGA----ACTACTTCATTAATACCTACCATCATTCCAAATAACCTGAAAAACCAGAGGTAA
AAGACTATACAAATAAAAATTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATTTGCAAGGTTATTTCATA
CTGCTATTTTATTCAACACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAGTTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTTATAGATGTGAAAAATACTAC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGGTTTGTTCAA
CGAAACACATTGGCTCTGCTTACACTAAGTCTAAGTTCATCATCATTC
>chr3D_1970
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---------ATGTCAACTTTAACATAGATTGAAAAGATAGCCAATAACCAAAAATAATAATTAAACTCCACTTCACTTGC
AATATATTTTGAC---AAAAAATTGAAACATTGAACTCTTTATTGTGCACTTCATTACAAATGATAATAACACTTGAATG
CCTTTATTATTTATGCTTAAGATTCGATCATCTGACCAAAG-----CATGTGTAG-GTTATTATCCATTAATTAAAGACA
AACACATGGTGTACTTTGTTCCCGTTAAACAAATATTCGAAGAAGTTACAACCAGAGAGCGGTT----------CTGACA
GCACATCAGGCTAGACCAGAACTTTCAACTCTCATCATGAGGCGATATAAAATGTTC-GAAAATAATACACCTCTATGAA
ATACTGCAAGGCAGCCCCAAGATATTGAGGT-CTAAATTTCTAAGAGCTTAAATGCTTAATAT---AATCATGCTTCTCC
ATTTTGAGCCAGTCCAGCTAACGTACACTACTTCATTAATGCCTACCATCATTCCAGAAAACCTGCA-----------AA
AACACTGTACAATTTT---TTTCAGTTGAGTTGAAAGGCTCAAATTAAAAACCAACACATATATGCAAGGTTATTTCATA
CTGCTATTTTATTCAACACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAATTTTGGCGC
AACTTTATACTACTTACGAATATAAAGAATAATATTAGTTAAAAAAT-CCCTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGATTTTAGGAGAAATAAGGA--GAGAGCTGGTTTGTTCAA
GGAAACGGAATGGCTC--------------------------------
>chr6D_2276
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------------------------------CTCATTGTGTGGCAATATAAAATGTCCAG-AAAAAATATAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGG----ACTACTTCATTAATACCTACCATCATTCCAGATAACCTGCAAAACCAGAGGTAA
AAGACTATACAAATAAAAGTTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATATGCAGGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAATTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAAACCTTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGTTTTGTTCAA
CGAAACAGATTGGCTCTCCTTACACTAAGTCTAAGTTCATCATCATTC
>chr6D_2276
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------------------------------CTCATTGTGTGGCAATATAAAATGTCCGG-AAAAAATATAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGAAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGG----ACTACTTCATTAATACCTACCATCATTCCAGATAACCTGCAAAACCAAAGGTAA
AAGACTATACAAATAAAAGTTTCAGTTGAGTTGAAAGGCTCAAACTGAAAGCCAACAAATATATGCAGGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAATTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTCCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGTTTTGTTCAA
CGAAACAGATTGGCTCTCCTTACACTAAGTCTAAGTTCATCATCATTC
>chr7D_2276
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------------------------------CTCATTGTGCGGCAATATAAAATGTCCGG-AAAAAATATAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGG----ACTACTTCATTAATACCTACCATCATTCCAAATAACCTGCAAAACCAGAGGTAA
AAGACTATACAAATAAAAGTTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATATGCAGGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAATTTCGGTGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CATTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTTCAAGGAACCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGTTTTGTTCAA
CGAAACAGATTGGCTCTCCTTACACTAAGTCTAAGTTCATCATCATTC
>chr7B_2276
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------------------------------CTCATTGTGTGGCAATATAAAATGTTCGG-AAAAAATATAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATGGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGG----ACTACTTCATTAATACCTACCATCATTCCAGATAACCTGCAAAACCAGAGGTAA
AAGACTATACAAATAGAAGTTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATATGCAGGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTACCAATTTTGGGGC
AACTTTATACTACTTACAAATATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGTTTTGTTCAA
CGAAACAGATTGGCTCTCCTTACACTAAGTCTAAGTTCATCATCATTC
>chr3A_2276
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------------------------------CTCATTGTGTGGCAATATAAAATGTCCTG-AAAAAGTATAGCTCTCTGAA
ATAATGCAAGGCAGCCCCAAGATATCGAGGTTCTAAATTGCTAGGAGCTTAAATGCTTAATAATACAATCATGTTTCTCC
ACTTTGAGCCAGTCCAACGTGG----ACTACTTCATTAATACCTACCATCATTCCAGATAACCTGCAAAACCAGAGGTAA
AAGACTATACAAATAAAAGTTTCAGTTGAGTTGAAAGGCTCAAACTAAAAGCCAACAAATATATGCAGGGTTATTTCATA
CTGCTATTTTATTCAGCACCAATAACCTCCTTGTCAGCATCATAATATATCATCCAAAATCATATTAACAATTTTGGGGC
AACTTTATACTACTTACAATTATAAAGAATAATATTAACTAAAAAAA-CCTTGGATTGTAATAGATGTGAAAAATACTTC
TATGTTTCAAGGAATCATATGGTGTGAGTATCGTCTGAAAGCTTTTAGGAGAAATAAGGATAGAGAGCTGTTTTGTTCAA
CGAAACAGATTGGCTCTTCTTACACTAAGTCTAAGTTCATCATCATTC
>SNPs
-----------------------------S--------------------------------------------------
-----S--------------S------S----------------------------------------------------
-----------------------------------------------------------------S--------------
------------------S-------------------------------------------------------------
------------------------------------S------------S------------------------------
-----------------------------------------------------S--------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
----------------------S-------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------------------------------------------------------------------------S----
--------------------------S--S-----------------------------------------S--------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------------------------------------------------S-------------
---------------------------------------S------------------------------------S---
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
---S-------------------------------------------------------S--------------------
---------------S-------------------------------------------------S--------------
------------------------------------------S----S--------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
SS---------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
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------------------------------------------------S-------------------------------
-------------------------------------------------------------S------------------
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>forward_707
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-----------------------------------------------AGTTGCCTTGACCTTTCCCG-------------
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>reverse_1712
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-------------------------------CCTGGAGAGCTTGCAACTCG-----------------------------
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>forward_1517
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---------------------------------------------------------TGCCAACAGCTGTTTACCTC---
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------------------------------------------------
>reverse_2702
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-------------------------------------------------------------GTATTACCAGTTTTGGGGC
AACT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
