>input_sequence_67225
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-----------------------------------------------ATGGGCCTCCCTGCCCAGGAGCAGCAGCGTGAG
CCTGAGCCCGCCCTGCCGCTCGTCCGCCTGAACCACGTCGCCTTCTCGTGCGCGTCCGTCGAGGACTCCATCGACTTCTA
CCGACGCGTGCTCGGCTTCCAGCTGATCCAGCGCCCGGCGTCCCTGGACTTCGGGGGAGCATGGTGAGCACGCACAAATT
CACATGCTTCTTGCCGCGTCGCGTTTGGATCAGCGTTTCTCCTCGTTTCTGGCCGGTATAGAATACAGAGCTCGTTCCGT
TGTTTGATTCCAGGCAGGAATCAAGTGTTGACCTGTAATTTATATTTGTAAAATTGTAAAATAAATACAGGTGTAAAAAC
TTACATCCAATCCAAGCAGGGCCTTAATGTATTTGCTGATGTGAAAATGTTGCTCTGTTCGCAGGATGCATAGAGACGGC
ATGGGCATACATCTGCTGCAGCGCAGCGCCGGCTGCGATGCGCCTCCGAGGTCGCCGGCGATCAACCCCAAGGGCAACCA
CATATCGTTTCAGGTCAGTGCAGATCAAGCACGGGGAGAGTTGCGGGCACGCTCGTCGTTGATTAATCTCTGACCCGTCG
TGTGCGGTTTGGAAATGGCAGTGCACGGACATGGCGCTGACGAAGGCGAGGCTGCGTGGCATGAATCTGGATGTGGTCAC
CACGAGGGTGTGGGACGGCGAGACGACGGTGGAGCAGCTCTTCTTCCACGACCCCGACGGGAACGTGATCGAGATCTGCA
ACTGCGAAGACCTTCCTGTGGTGCCCCTTGCTCCGCCTGCTTGCCTTGCCAAGCAGACGGTGCAGATGAACGTGCATCTC
TACTTCTCGTGCTAG-----------------------------------------------------------------
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>chr2B_1_TraesCS2B01G405500
AAGCGACAAGGGCCACCACCAATGAAGAGGACGTCGCTGTTGTGCAAGACAAAGAACACAAACGTGACACTGTTGGTGCT
GCCAAAAGCCCAAGAGGGCCCATCTGGCATCCCCGCTCCGTCCTCACTGGAGATAGCCGGCAATAGATCTGAACTTGAAG
CCACTAGACCTCCAGAAGGCGGAGATGGCCTCCGAGAACAACCATGTGTCGCCCCTAGCAAATCATCACCGCGCTCCCCA
TGGTCGTCTAGAGCCGCCTAAATCCGTAGAAAGCTTCACTCGCTGAAAAGACGACCACAACCACGGACCGCTGGCCACCT
TAGGAAGCGGCGCTCCCTGAAAAGGACGGCCTCAATCGTCAGTTGCCGGAGGAGAAAAGGCGGCGGCCACCCAGCACACC
GATGTGGTGCAAGAATTACTATTACTTTATTTCAGTAAAGATGGTTATGTGGATTGGGTGAAGGCTATGGATGTACTACT
TCGGTCTGGCACGTTTTTTCTACGAAACATCTTATGTTCTGAGACGGCGATAGTACCCTTCTTTTCGTGCAAACTCTTGT
ATGTGGGT------------------------------------------------------------------------
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-----------------------------------------------------------------------------GAG
TATCCGAAAATCCGCTTCCCGTGCCTACCTGTATACCAGCAGCGTCGAGTAGCTGAGTATTGATTTTGTCAATTTCGTGG
ATCTTATGTCTGT-------AAACGTGCACGAGAAGGTGACGATGCCTGCGTGTAAGATGCCCACAGCACGGCAACAGGT
GGATGGATACCGAGTAAGGAGATTGGCGATCGATCCCTCGTGGCGGTCAAAGTCTCCTCCTCAAAGGGATC---------
CTGATATCCTGAATCCGCGTTTGCGTCAAGACACACACCTTCTCATGTACGCGTGTATATCCCG-AACAAAATGTGGCAT
GTATATGTAGTATGTGTATAAATACGGAAAGATATGTCACCTCCTGTCTATTGACCAGGACCGCAATCGACTTCACTGAA
ATTATTCATCAGCATACCATCC-AAATACAATCGTCCCAGCTCCTACATGGGCCTCCCTGCCCAGGAGCAGCAGCGTGAG
CCTGAGCCCGCCCTGCCGCTCGTCCGCCTGAACCACGTCGCCTTCTCGTGCGCGTCCGTCGAGGACTCCATCGACTTCTA
CCGACGCGTGCTCGGCTTCCAGCTGATCCAGCGCCCGGCGTCCCTGGACTTCGGGGGAGCATGGTGAGCACGCACAAATT
CACATGCTTCTTGCCGCGTCGCGTTTGGATCAGCGTTTCTCCTCGTTTCTGGCCGGTATAGAATACAGAGCTCGTTCCGT
TGTTTGATTCCAGGCAGGAATCAAGTGTTGACCTGTAATTTATATTTGTAAAATTGTAAAATAAATACAGGTGTAAAAAC
TTACATCCAATCCAAGCAGGGCCTTAATGTATTTGCTGATGTGAAAATGTTGCTCTGTTCGCAGGATGCATAGAGACGGC
ATGGGCATACATCTGCTGCAGCGCAGCGCCGGCTGCGATGCGCCTCCGAGGTCGCCGGCGATCAACCCCAAGGGCAACCA
CATATCGTTTCAGGTCAGTGCAGATCAAGCACGGGGAGAGTTGCGGGCACGCTCGTCGTTGATTAATCTCTGACCCGTCG
TGTGCGGTTTGGAAATGGCAGTGCACGGACATGGCGCTGACGAAGGCGAGGCTGCGTGGCATGAATCTGGATGTGGTCAC
CACGAGGGTGTGGGACGGCGAGACGACGGTGGAGCAGCTCTTCTTCCACGACCCCGACGGGAACGTGATCGAGATCTGCA
ACTGCGAAGACCTTCCTGTGGTGCCCCTTGCTCCGCCTGCTTGCCTTGCCAAGCAGACGGTGCAGATGAACGTGCATCTC
TACTTCTCGTGCTAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGTAGACAAGACAAGCAT
AATTTGATTCATTTAGATTGCAAACAAAATGTACGTGATGACCTTGATTTGCACATTCATTCTTGGCCCGGGAGTGATTA
AGTTTTGGACCGCGAGAACTGCGGAACACCATGTACGAGCATATGGCAATTCCGAACATTTTCGATGACAAGTTATTCAT
CTATGCCGCACCTACCCAAAGTCCTAAAACCTATAAGGGCGTATAATTTTTATGCCCCCGCCGGAAAAGCCCTCCAAACA
GCCTAAATATACTCGGCGCCTGCACGGCGAGTAAAAGTTACGCGCCTCTTTCTCCGGCCGATGCCGCCTCGACGTGTCGC
CGTCGGTACCGATGACCGCCCTCATCACCAGAATGGATAGCCAAGACGCTTCTGC
>chr2D_1
AAGCGATAAGGGCCACCACCAATGAAGAGGACGTCGCTATTGTGCAAGAAAAAGAACACAAACGTGACACCGTCGGTGCT
GCCAAAGCCCAAT-AGGGGCCATCTGGCAACCCCGCTCCGTCCTCACTGGAGATAGCCGGCAATAGATCTGAACTTGAAG
CCACTAGACCTCCAGAAGGTGGAGATGGCCGCCAAGAACAACCGTGTGTCGCCCTAGA-AAATCATCACCACGCTCCCCG
TGGTCGGCTAGAGCCGC-TAAATCCGTAGAAAGCTTCACTCCCTGAAAAGACGACCACAACCGTGGATCGCTGGCCACCT
TAGGAAGCGGCGCTCCCTGAAAAGGACAACCTCAGTCATTATTTGCCGGAGGAGAAAAGGCGGCGGCCACCCAACACGCG
GAAGAGGTGTGAGAAG---TACTACATTATTTCAGTAAAGATGGTTGTGGGCATTGGGTAGAGGCCAGGGATATACTACC
GCCGTCGGGACA--TTTTTCTATAAAACATCTTATATTCTGAGACGGAGATAGTAGCCTTCTTTTCGTGCAAACTCTTGT
TTGTGGGTAGGGATGGCAATGAGTACCCATTACCTATGTACCCTGCGGTAAAAACCCTATTAGGGTAAAGGTATGAGACA
AAATGTTACCCATGGGTATATAAATAGGAGAATCTCAAACCCATCGGGTAGAAAGGGTACGGGCATGGGATCACATAACC
CATACTCGCATACCCATGTATCCTTATAAAATGTAACAAATATAGACAAATTACCTCTATATTTTGTCATGAGTTTGTTA
ACTTAAAATTTATGACTATGCGCTACTATTTATGACTATGTGTTGATGTTTTGATGTGTCGTTCTTTACAAGGAAGTGTT
GATTTTATAGAATGTATTGTTGTTTAGGATGTGTTGTTGTTTATAAGTATGTATTGATGTCATTATGTGTTGTCCTTTAT
AAAATATGATTGTATGTTGTTGTACGTAATAATGCGATGCTCAAATTAATGTTATTCAGACATGGGTATTTTTATCCGTG
GTACCCGTTTACCCTGTAGGGTGACAGGTATGAAAAAAAAGCGTACCCACTAACGGGTATGGATACTTGTGATGGGTAAG
TTCAAATGGAATGGATAAAGTTATGGGATAGCTCCATCCATGTTCATACCCTGCGGGTGCCATCCCTATTTGTGGGTGAG
TATATGAAAATCCGCTCCCCGTGCCTACCTGTATACCAGCAGCGTCGAGTAGCTGAGTATTGATTTGGTCAATTTCGTGG
---------------------------CACGAGAAGGTGACG-TGCCTGCCTGTAAGATGCCC--AGCACGGCAACAGGT
GGATGGATACCGAGTAAGGAGATTGA-GATCGATCCCTCCTGGCGGTCAA-GTCTCCTCCCCAAAGGGATC---------
CTGATATCCTGAATCCGCGTTTGCGTTAAGACACACACTTTCTCATGTATGCGTGTACATCCCGAAACAAAATGTGGCAT
GTAC------TATGTGTATAAATACGGAGCGATGA-TCATCTCCTGTCTATTGACCAGGACCGCAATCGAATTCACTGAA
ATTGTTCATCAGTACACCATCC-AAATACATTCGTCCCAGCTCCTACATGGGCCTCCCTGCCCAGGAGCAGCAGCGTGAG
CCTGAGCCCGCCCTGCCGCTCGTCCGCCTGAACCACGTCGCCTTCTCGTGCACGTCCGTCGAGGACTCCATCGACTTCTA
CCGACGCGTGCTCGGCTTCCAGCTGATCCAGCGCCCGGCGTCCCTGGACTTCGGGGGAGCATGGTGAGGACGCACAAATT
CAAATGCTTCTTGCCGCGTCGTACA-------------------------------------------------------
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-------------------------AATGCATTTGGTGATGTGAAA-TGTTGCTCG--TCGCAGGATGCATAGAGACGGC
ATGGGCATACATTTGCTGCAGCGGAGCGCCGGCAGCGACGCGCCTCCGAGGTCGCCGGCGATCAACCCCAAGGGCAACCA
CATATCGTTTCAGGTCAGTGCAGATCAAGCACGGAGGGAGTTGGTGGCACCCTCGTCGTTGATTAATCTCTGACCCGTCG
TGAGCGGTTTGGAAATGGCAGAGCTTGGACATGGCGCTGACGAAGGCGAGGCTGCGCGGCATGAACCTGGAGGTGGTCAC
CACGAGGGTGTGGGACGGCGAGACGACGGTGGAGCAGCTCTTCTTCCACGACCCCGACGGGAACGTGATCGAGATCTGCA
ACTGCGAAGACCTTCCCGTGGTGCCCCTTGCTCCGCCTGCTTGCCTTGCCAAGCAGACGGTGCAGATGAACGTGCATCTC
TAGTTCTCGGGCTAGTAG--------------------------------------------------------------
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>chr2A_564
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---TGGGA------------------------------------------------------------------------
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-----------------------------------------------------------------------------GAG
GATCCGAGAATCCGCGTCCCG-GCCTGCCTGTAAACCAGCAGCGTCGAGTTGCTGAGTATTGATTTGGTCAATTTCGTGG
ATTTTGTGTCTGCAAACCGCAAACGTGCACGAGAAGGTGACG-TGCCTGCCTGTAAGATGCCC--AGCACGGCAACAGGT
CGATGGATACCGAGTAAGGAGATTGA-GATCGACCCCTCGTGGCGGTCAA-GTCTCCTCCCCGAAGGACGGGATCCCGCA
CTGATATCCTGAATCCGCGTTTGCGTTAAGACACACACTTCCTCATGTACGCGTGTACATACCGACCCAAAATGTGGCAT
GTACAGTATG--TGTGTATAAATACGGA---------------------------CAGGACCGCAATCGAATGCACTGAA
ATTATTCATCAGTACACCACCCAAAATACAATCGTCCCAGCTCCTACATGGACCTCCCTGCTCAGGAGCAGCAGCCTGAG
CCTGAACCCGCCCTGCCGCTCGTCCGCCTGAACCACGTCGCCTTCTCGTGCACGTCCGTCGAGGACTCCGTCGACTTCTA
CCGACGCGTGCTCGGCTTCCAGCTGATCCAACGCCCGGCGTCCCTGGACTTCGGGGGAGCATGGTGAGGACGCGCAAATT
CAAATGCTTCTTGCCGCGTCGTGTAAAAAACAGCG---------------------------------------------
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---------------------------TGTGTTCGCTGATGCGGGA-TGTTGCTCG--TCGCAGGATGCATAGATACGGC
ATGGGCATACACCTGCTGCAGCGGAGCGCCGGCTGCGACGCGCCTCCGAGATCGCCGGCGATCAACCCGAAGGGCAACCA
CATATCCTTTCAGGTCAGTGCAGATCAAGCACGGGGAGAGCTGCGGGCACCCTCGTCGCTGATTAATCTCTGACCCGTGG
TGCGCGGTTTGGAAATGGCAGTGCTCGGACATGGCGCTGACGAAGGCGAGGCTGCGCGATATGAACCTGGAGGTGGTCAC
CACGAGGGTGCGGGACGGCGAGACGACGGTGGAGCAGCTCTTCTTCCACGCCCCGGACGGGAACGTGATCGAGATCTGCA
ACTGCGAGGACCTTCCCGTGGTGCCCCTTGCTCCACCTGCTTGCCTTGCCAAGCACACGGTGTAGATGAACGTGCATCTC
TAGTTCTCGTGCTAGTGCTTCGTAGGGATGATCCTGCGAGAAATGGGGGTGGAATTGTTGTTGTAT--------------
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------------------------------------------------------------------------ACAAGCAT
GATTTGATTCATTTAGATTGCAAACAAAATGTACTTCATGACCTTGATTTGCACATTCATTGTTGGGCCGTAATGCTTAG
GTTTT---------------------------------------------------------------------------
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>SNPs
------S-------------------------------S----------S--------------------S--S------
------SS--S-SS----S----------S--------------------------------------------------
-------------------S----------S--S---------S----------SSSSS-----------S--------S
------S----------S-----------------------S--------------------SS---S------------
---------------------------SS-----S--S-S-S-------------------------------S---S-S
--S-S----SS----SSSS--S---S--------------------S--S-S-------SS----S-S----S------S
S-S---S--SSSSS--------SS-----------S-----------S-------S------------------------
S-------------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
--S--S------S-----------------------------S-------S------------SS---------------
-------------------------SS-----------------------S---------S-------------------
--------------------------S-----------S------------------S----------------------
---S-SSSS-------------------SS---SSS---S------------------------------S---------
------------S-S-----------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------S-----------
--S------------------S--SSSS-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------------------S--------SSS----------------------
-----------------------S--------------S-----------------------------------------
--------------------------------------------------S-----------------------------
--S---------------------S-------------------------------S--------S-----S--------
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----------------S---------------------------------------------------------------
--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
S---------------------------------S-S------------------------S----S---SS-SSSS-SS
SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_355
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---------------CCTGAAAAGGACGGCCTCAA---------------------------------------------
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>reverse_2007
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------CCAATCCAAGCAGGGCCTTA------------------------------------------------------
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>forward_1924
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----------------------------------------------------------------ACAGAGCTCGTTCCGT
TGTT----------------------------------------------------------------------------
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>reverse_3385
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------------------------CGGCGAGTAAAAGTTACGCG------------------------------------
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