>input_sequence_67212
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-----------------------------------------ATGCCAGCCATGTACGCGCTGACCCCCCGCTGCACCCTC
CCGCCG---CACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGCACTGGCCCGCGCCGACCCGGA
CGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCGGGCTCGGCCGCCGTCCTCTCCTCGCTGTCCGCGTCCG
CCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCGGCCCTCGCCGCGTACACCGTCGCCGACCTCGCC
ACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCGCTCGTCGGCGCGCAGATCGCCGCCTTCCA
GGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACGCGCTGGCGCGCGCCGTCGCGC
TCGCGCTCCCCGCCGTGGAGGCCGCCGCCGCGGCCGCCCACGCGCCGGCCGCCGCGCACGCCTTCGCGGGCACCTTCGCG
GCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGAGAAGCGCCGCCGGCTGCCGCCCGGCGTCGAGGCGCT
GCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCTACAGCACCAACTACTGCATCC
TCAGCGGCATGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATGGTCGTCTTCTTCCGCACCGGC
GTCCGCCCGCGCTCATGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCT------CCGTCACCGCCGTCGC
TGTTACTGACAGTTCGTAA-------------------------------------------------------------
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>chr6D_1_TraesCS6D01G100200
CTAAACGTGGACCAAAAGTAGGCTGAAATTTAATTGTGTTAGCCGATACCATGTAGAACTGCACGCACTAGTCAATTCAT
CCAAAAGTTTAAGTTGATGAGGAAATATGGGCTATGCATTTATACGTCAACAAGGAGGATGAGAGACAAGGTGACGGCTA
GGGTCCGAATACCCTGGGAGCGATGCGGGGGCATGAAAGTCTCAGTGGTAAAGGGTCTATGGGTAGGACTATGGTCGGCC
ATGGCGGGGAGGGAGGGAGCGACCTTGTGCGGTTGTGCCACGGGGGACTAGTGAGTTCGTCGGAGAGGTCAACACGACTA
GTGTGTCACTCTAGTGTCCAATCATTGGGGGTGAGTGTATGGTTCAATGATGGCCTCATATTGACGGTGGGTGGTCGGGC
TTCGTTGCTTGTTTGGTTTCCGGCATGGTTTCCCTCAGCCACTAGCCACTGAGATTTTCGATCCAGTTTGAACTCTCCAT
GATGTATTCCTTGAATTGCAAAATGACAAAACCATAAATTGCGTGTGTTCTAAAAGCTTAACCATTTTAGTATTCTTTGC
ACGTGTAATTCGGCCATTTCCATTGCACTGTCTAGGCTGCAGCTTCAAGATAAGTGATGTTTCATGCAAAAGTCGGAGAA
AGGAGATGTTTCATGCAAAATTGCAGACGCGGCTTCTTTTGACGCAAACACCACCACAAAGTTACCACGTAGTTCATCAC
TCCACCACATACATGGCTCACAAGTAAACAGCCATAGCCCTGCACTTTTCCAGAGAGAAAGCGATTTGAGAGGGAGAGAG
ATGAGACGAGGGGAGAGCGAGAAAACTCCTACTACA-TACGAGTTAAATTTCCGTCCACTAATAATTCGCCGTCGTGGAC
TCACCATTTGCTATGAGCCTATGATCCACTCCTACAAAGCCAGCAGCCTTCACAACTTCTGGCTGGAATTCGTTTTGAAC
AAAAGCCGATCACGCGCGTACGTGGAAGCAGAGACCAAGCCATGCCAGCCATGTACGCGCTGACCCCCCGCTGCACCCTC
CCGCCG---CACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGCACTGGCCCGCGCCGACCCGGA
CGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCGGGCTCGGCCGCCGTCCTCTCCTCGCTGTCCGCGTCCG
CCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCGGCCCTCGCCGCGTACACCGTCGCCGACCTCGCC
ACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCGCTCGTCGGCGCGCAGATCGCCGCCTTCCA
GGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACGCGCTGGCGCGCGCCGTCGCGC
TCGCGCTCCCCGCCGTGGAGGCCGCCGCCGCGGCCGCCCACGCGCCGGCCGCCGCGCACGCCTTCGCGGGCACCTTCGCG
GCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGAGAAGCGCCGCCGGCTGCCGCCCGGCGTCGAGGCGCT
GCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCTACAGCACCAACTACTGCATCC
TCAGCGGCATGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATGGTCGTCTTCTTCCGCACCGGC
GTCCGCCCGCGCTCATGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCT------CCGTCACCGCCGTCGC
TGTTACTGACAGTTCGTAACATACATCGACCATCGTG------------------------TACATACATACATACTACG
ATTCAAAAGGTATACAGAAAGATGAACTGGGATTGAAAGGATTCAAATAT------ACGAGTTTAGCTAGGTGGAAAAAT
ATAAATATTTAATGTATATTTTAGGTTGTTTTTGAGGATGCAAATCTTGTGGTGTATGCAAAGAGAGAAGAATTTTTTAT
AATTGAAAATGTGATGATTTTTTATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCCACAGCTTTCTTGTGGTGCAA
ATGATTTTGTTCTGGTGGCATGTTCTTCGGATATCCAGTATCTTCTTGTCCACTTGCCAGAAAAAAGCACATCCAGTTGA
GATGATCAACTCTTTGCAACAACATTCGCAAGAAGGCAAGTCACACAGCCACACATGCATATGTCTTAAATCTGCTTATA
TCTATCGAA---TATGTGTTAATCCATCCGCCAAAAGTGTGACCAACATCGGCTAAAAGGCTTATTTGAGGCTCAGACCA
TCTGCTCTTGATTCAAATGGCATGGATGTGAATCACATGTCTGTACAAATTCTGCTTTTTGGCGTCTCAATCTCGAGCAT
CGATCCTGAATCAGGCAGATGAAGCAACAGAAACAAGCCGGCACTTCCAAAACTGCGGAGGGCGAAACCTAGAGGACCGA
AAACTGAAGATGAATCCCTCAGCTGGAAGAGCTGCTGACCGTAGCAATCGCTTCGAAGCAAGGAGGGGTCGCGGGTGTAG
GAAGAGGTGAAGGGGATGTCAGCGCGGCCGTCCATCGGGTGAATTCGCCGGAGGCAGCTCGGGCGGGCCGAAAGCGGCTC
GGTGGCGAGGGTGCGGCGAGGGCGCTCGAGTGTGTAGCGCGCGGAAGTGGGCGCACGAAATAAGCGGCGCGCGATGCCGT
CTCGCCCTCCGCTGGAGCGCCCGGAGCGGCTGCGCGCGCAAAAATCTGTATTTTTCCAGCGCGGCTGCTGGAGATGCTCT
TAGAAATTGTCT
>chr6A_666
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-------------------------GACGCACCTTCTTTTGACGCAAACACCAC----AAGTTACCACGTAGTTCATCAC
TCCACCACATACATGGCTCACAAGTAAACAGCCATAACCCTGCACTTTCCCAGAGAGAAAGCGATTTGAGAGGGAGAGAG
ATGAGACGAGGAGAGAGCGAGAGAACTCCCTACATACTACGAGTTAAATTGCCGTCCACTAAT---TCGCCATTGTGGAC
TCACCATCTG--------CTATGATCCACTCCTATAAAGCCAGCAGCCCGCGCAACTTCTGGCTGGAATTCGTTTTGAAC
GAAAGCGGATCACGCGCGTACGTGGAAGCAGACACCAAGCCATGCCAGCCATGTACGCGCTGACCCCCCGCTGCACCCTC
CCGCCGGTGCACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGCGCTGGCCCGCGCCGACCCGGA
CGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCCGGCTCGGCCGCCGTGCTCTCCTCGCTCTCCGCGTCCG
CCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCCGCCCTCGCCGCCTACACCGTCGCCGACCTCGCC
ACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCCCTCGTCGGCGCGCAGATCGCCGCCTTCCA
GGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACGCGCTGGCGCGCGCCGTCGCGC
TCGCGCTCCCCGCCGTGGAGGGCGCGGCGGCCGCCGCCCACGCGCCGGCCGCCGCGCACGCCTTCGCGGGGACCTTCGCG
GCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCATGGGCGCACGAGAAACGCCGCCGGCTGCCGCCCGGCGTCGAGGCGCT
GCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCTACAGCACCAACTACTGCATCC
TCAGCGGCGTGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATGGTCGTCTTCTTCCGCACCGGC
GTCCGCCCGCGGTCGTGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCGCCGCCGCCGTCACCGCCATCGC
TGTTACTGACAGTTCGTAACATACATCGAGCAT-TGTTTCTCGTGATGGCTTGTACATACATACATTGATACATACTACG
ATTCAAAAGGTATGCAGAAGGATGAGCTGGGATTGAAAGGATTGAAGTAACAAGTTAAGATTATAGTTAGGCGGGAAAAA
TATAATATTTAATGTATATTTTAGGTTGGTTTTGAGGATGCAAATCTTGTGGTGTATGCGAAGAGAAGAGAATTTTTCAT
AGTTGAAAATGTGATGATTTTTTATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCCACAGCTTTCTTGTGGTGCGA
ATGCTTTCGTTCTGGTGGCATGTTCTTCGGATATCCAGTATCCTCTTGTCCACTTGCCAGAAAAAAGCACAGCCAGTTGA
GATGATCAACTCTTTGCAACAACATTGGCACGAAGGCAAGTCACACAGCCACACATGCATATGTCTTAAATCTGCTTATA
TCTATCGAA---TATGTGTTAATCCATCCACCAAAAGGGTGTACAACATCGGCTAAAAAGCTTATTTGAGGCTCAGACCA
TCTGATCTTGATTCAAATGGCATGGATGTGAATCACATGTCTAGAGATTCTAT--TTTTTGGCGCCTCAATCTCGAGCAT
CGATCCTGGATCAGGCAGATGAAGCAACAGAAACAAGCTGACACTTCCAAAACTGCGGGGGTGGGAGCC-AGAGGACGGA
AGGCTGAAGATGAATCCTTCAGCTGGAAGTACTGCTGACCGTGGCAACCGCTTCCAAGCAAGGAG---------------
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>chr6B_666
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-------------------------GACGCACCTTCTTTTGA-GCAAACACCAC----AAGTTACCACGTAGTTCATCAC
TCCACCACATACATGGCTCACAAGTAAACAGCCATAGCCGTGCACTTTCCCAGAGAGAAAGCGATTTGAGAGGGAGAGAG
ATGAGACGAGGGGAGATGGAGAGAACTCCCTACATACGAGTTCATCACTCCACCACTAATAAT---TCGCCGTCGTCGAC
TCACCATTTG--------CTATGATCTACTCCTATAAAGCCAGCAGACTGCGCAACTTCTGGCTGGAATTCGTTTTGAAC
GAAAGCCGATCACGCGCGTACGTGGAAGCAGAGGCCAAGCCATGCCAGCCATGTACGCGCTGACCCCCCGCTGCACCCTC
CCGCCG---CACCGCCGGGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGCGCTGGCCCGCGCCGACCCGGA
CGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCCGGCTCGGCCGCCGTCCTCTCCTCGCTGTCCGCGTCCG
CCTCCCTCGCCGCTGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCCGCGCTCGCCGCCTACACCGTCGCCGACCTCGCC
ACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCGCTCGTCGGCGCGCAGATCGCCGCCTTCCA
GGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACGCGCTGGCGCGCGCCGTGGCGC
TCGCGCTCCCCGCCGTGGAGGCCGCGGCCGCGGCCGCCCACGCGCCGGCCGCCGCGCACGCCTTCGCGGGCACCTTCGCG
GCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGAGAAGCGCCGCCGGCTGCCGCCCGGCGTCGAGGCGCT
GCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCTACAGCACCAACTACTGCATCC
TCAGCGGCGTGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATGGTCGTCTTCTTCCGCACCGGC
GTCCGCCCGCGCTCATGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCGGCAGCGCCGCCGCCGTC---------GC
TCTGACTGACAGTTCGTAACATACATCGAGCATCTTTTTTGAGTGATGGCCTG------------TACATACATACTACG
GTTCAAAAGGTATACAGA-GGATGAACTGGGATTGAATGGATTCAAGTAA------ACGAGTTTAGCTAGGTGGGAAAAT
ATAAATATTTAATGTATATTTTAGGTTGGTTTTGAGGATGCAAATCTTGTGGTGTATGCAAAGAGAAAAGAATTCTTTTC
AATTGAAAATGTGATGATTTTTCATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCCACGGCTTTCTTGTGGTGCAA
ATGCATTTGTTCTGGTGGCATGTTCGTCGGATATCCA-TATCTTCTTGTCCACTTGCCAGAAAAAAGCACAACCAGTTGA
GATGATCAACTCTTTGCAATCACAG---------------------AGCCACACATGCATATGTCTTAAATCTACATATA
TCTATCGAGTACTATGTGTTAATTCATCCACCAAAAGTGCGTACAACATCGGCTAAAAAGCTTATTTGAGACTCAGA---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-----SS----------------------SSSS----------------------
------------------------------------------------S-------------------------------
----------------------S------SSSS-S---------------S------------SSS--------------
----------SSSSSSSS----------------S--------------S-S----------------------------
S-------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------S-------------------------------------
----------------------------------------------S-----------S---------------------
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-------------------------S------------------------------------------------------
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--------S-----------------------------------------------------------------------
---------------------------------------------------------S-----------------S----
-----------------------------S----S-S-------------------------------------------
-------------------S--------------------------S--S------------------------S-----
----------------------------S-------------------------------------S-------------
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---S-------------------------------------------------------------------S--------
--------------------------S---S-------------------------------------------------
-----------------------------S-----------SS---------------S---------------------
----S-------------------------------------SS-S-SSS-S-SS---------S---------------
--------S-----------------------------S-S-----------------S--SS-S-S--S-------S--
-SS--------------S-----------SS-----------S----S------S----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_426
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------GCTTGTTTGGTTTCCGGCAT------------------------------------------------------
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>reverse_2267
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--------------------------CGCAAGAAGGCAAGTCACAC----------------------------------
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