>input_sequence_67166
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-----------------CCGTAGCAACAGAAAGAAAAAAATCTCCTCCTCCTTCTCC------TCCGCCGCCGCCGCCGC
AATGCAGCGCCTCTCCATCGGATCGCCGGGCTCGAGACCCAGCCTGGATGCCGCCCCCGCCGCGGCCGCGGACGAGGCGG
ACGAGAAGGCGACGGGGAAGGCGGCCAGGGCGGCCGCGCCGGACAAGTCCATCCACCTCGTCCCCCTCCTCACGCTCCTC
TGCCTCCTCGTCCTCTTCCTCTTCTCCCACGACCCGGCCACTTCCCGCGCCATCGCCGGTAAGTAGCCAGCCAAACGTTC
GCTCCACTCCCTTCCCCTCGCCGGCCCTGCTCCTAACGCCGCTCGCGCGTCCCTGCAGATTCGCCGCCCGTCCTGGCCGT
CACCGCCCGCTCCCTCGAGGCCACAGGTAGGCGATAAGACTCGCGATGAACACGGCAGTCTCCGTCTGCGTCCCGTTCCC
CCATCTCTTACCTCGTTTGATTTTC----TCTCTCTCCC------TTGTTCGTTCCTGCAGCGGACACGACGCCGTCGGT
GGCTCGCGGCGGCGCGCACCAGCGGCTGAAGGCGGACCCGACGCCGCGCCGCGGGCGAAGGCTGGGGGCGCCGCGGCGGT
GACGGCG------ACGGCGCGGAATTGGGGAACGGGGAGGCTAAGGCTGGCCCACGTCCGCGCAAGCAGCTAGCCGTTGG
AACGTACTACGACGCGTCCTCAGCGCACGTCTCTTTCT---CTCCGCCCCCGTGCTGCGTCGTTGGTGGAACTTGAATGG
CCGCGAGCGTTCGTCTTCCTGTGGCCTCTATGAAATTGGGATTAGATTACCAGCCGCCCATCGCAATCGTCAATCACCAT
GTGTTCATACC---------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G197700
GCTCGGGCCCGCAGAAACCTCCAATGGTGGTGGGGAGTTGACGCCGGCACCTTCCATCCTGACTCCGAGGCGGATGACGC
CGGAGGAGCCCGTGGGCGCCGACACGAAGCCAAGCGCGGCCTCCTCATCCACAATGGCGCGCATCGGGACGGGCGCGTAG
CCAGGAGGGCCACGGCTCAGGCCCAACAGCCTCGCCGACGGGCGTCGGCATCGAGGGCGGGAGCCACGCGACCGGTGGAG
GTGGAG------GTGGAGGCGGAGATCCAAGGGG-CAATCCAGGCGCAGCGGCGGCCCCATTCATCATCGGGGCGCTCGG
GCCGGCCACCATCCAAGGGTCGAGCC--------------CCATGGGCGCATGGCCATGGGCGCGAGGAGCACCGCGGTG
GGCACGTCCTCTGGCGCGGCAACC------------CTGTCCCGGGGCATGGT---------GAACACCACGGGCGCCA-
-----------------------TGTCCAGTGGCGCGGTGACCATAAT--------------------------------
-------------------------------------------------------GGCCAGCGGCGCAACGGCCGAAACG
ACGGACGGCCTGCATCCTGCTACGGAAACGTCGAAGGCCACCAACGCCATGGTAGCGACGA---------CGGTAGCGAC
GACCGTCCTCACGGATCAGGCGGAGAAAGAAGGAAACAAGGCCAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTCTC
CTTTCTCTCTCT-GTTGC-CTTTCGCTC-TCGCTGGTTG-TCTACGTGCGTGATAACGTGTTTGAGATCGAAAGGT-AAA
TCTCTGTCTTGATTGATGG-CTACAGGCGCTACTTATATCATCTGAAGAGACGCGATCGAAGGCAGGCGTC---------
-----------------------------ACAAACCGCACGACGGTTTGGGCAAGGGGAGATTTTCCCTTAATTACAAAT
TGTAACTAATTCTAACAGCTTTTACAAAGGGGATGGACTAAGCCACGCTGTCATTTCTGCAGCAAACATCTCGTCTCAGT
CCCCGCGGATAAATACGCCCGCGTACAACAACCACCTTCCCGTTCCCCTGTTAAACCCCACCGCAGCGCACCGCACCTAT
-----------CCCGCACCGTAGCAACAGAAAGAAAAAAATCTCCTCCTCCTTCTCC------TCCGCCGCCGCCGCCGC
AATGCAGCGCCTCTCCATCGGATCGCCGGGCTCGAGACCCAGCCTGGATGCCGCCCCCGCCGCGGCCGCGGACGAGGCGG
ACGAGAAGGCGACGGGGAAGGCGGCCAGGGCGGCCGCGCCGGACAAGTCCATCCACCTCGTCCCCCTCCTCACGCTCCTC
TGCCTCCTCGTCCTCTTCCTCTTCTCCCACGACCCGGCCACTTCCCGCGCCATCGCCGGTAAGTAGCCAGCCAAACGTTC
GCTCCACTCCCTTCCCCTCGCCGGCCCTGCTCCTAACGCCGCTCGCGCGTCCCTGCAGATTCGCCGCCCGTCCTGGCCGT
CACCGCCCGCTCCCTCGAGGCCACAGGTAGGCGATAAGACTCGCGATGAACACGGCAGTCTCCGTCTGCGTCCCGTTCCC
CCATCTCTTACCTCGTTTGATTTTC----TCTCTCTCCC------TTGTTCGTTCCTGCAGCGGACACGACGCCGTCGGT
GGCTCGCGGCGGCGCGCACCAGCGGCTGAAGGCGGACCCGACGCCGCGCCGCGGGCGAAGGCTGGGGGCGCCGCGGCGGT
GACGGCG------ACGGCGCGGAATTGGGGAACGGGGAGGCTAAGGCTGGCCCACGTCCGCGCAAGCAGCTAGCCGTTGG
AACGTACTACGACGCGTCCTCAGCGCACGTCTCTTTCT---CTCCGCCCCCGTGCTGCGTCGTTGGTGGAACTTGAATGG
CCGCGAGCGTTCGTCTTCCTGTGGCCTCTATGAAATTGGGATTAGATTACCAGCCGCCCATCGCAATCGTCAATCACCAT
GTGTTCATACCCCATCGTCATTCTTTTCCC--TTCGGTTGTTCACCTGCCATTGATTCTGTGATTCTTTTTCCGTAATTG
G---TAGTACTGATGAGGAAATTGATGGATAGAATTCTGGTTCAGGTGCGTCGGATTGTCCATCGTCTTTGAACTGGTTT
TTGTTTTTGCCTTTGGGGTCGAATGAATGGGACGGGCGGTTAACGAATG-------------------------------
---AATGGGCTGGTTCCAGC------TTTCGGGGCCAAGCTGCCGCAGGGGATCACGAGAAAATTTATTGTTCGGCAGCA
GTAAAGTGGACAGACAGG-------CCACAACATACTGGACGCTGGTACATTCACGTTGCTGCTG-----CTAGTGCAAC
TAGGCCTGGCTGGCTTGGC------TTGGCTTGGACTGGGTCCACTGG--------------------------AAGCCT
CAGGTGTAACGACTATATATGTCCAAGCTGGAG-----------------------------------------------
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CCAATGCCCTCCATTTCTCACTTTTACAAGATTCATAGAGACGTTTACAGAATGCAAGTAATTAACCTTGAAAATGATCT
TTCTATAAGTATGTGCATCTTTGTATAAGTAAGCTA--TGCCACCGTGGGTATGCGATATGCCCGATCACATTTGCAAAC
AGATTTACCATCACGGATCGAGGGTAGTAGGCTCGCAGTGAGGCAGGCTAGCAGACAATAGCATAGTGCAAATGTAGCGT
TAATTCTAGAGGAGTGATGAGCAAATTTTGGACTAATGGATGACTTTCGCGGGACAAAGCGGGATGCCGCTTGCACCCCT
ACACGCAGGGCAAACTGCATCTCCATGAACACTA---C-----------------AAAGCTTCATCTCTGAAACAAAAGC
AAACAAGAAAATGAAAAGGGAATACAGCAAGGAACAGAAGCAAGAAGAGATGCGAGTGGCAATCGTCGGTGG--CGCCGG
GGAGCACAGGCAACTGAGCAGTGGCCACGGAACGAGATCCATACACAAGTGCTATCAGCAGCAGCGGCAGCGTACCCCAT
TCCT-CCGGCAAGTCACATCCACCGACAAGGAGCTTTAAACACACGAATGCT
>chrUn_1
GCTCGGGCCCGCAGTAGCCTCTAGTGGTGGTGGGGGGTTGACGCCGACACCTTCCATCCCTACTCCGAGGTGGATGACGC
CGGAGGCGCCGGTGGGCGCTGACACGAAGCCAAGCGCGGCCTCTTCGTCCACAGTGGCGCGCATCGGGACGGGTGCGTAG
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGGCGGGCGTCGGCGTCGAGGGCGGGAGCCAAGGGGCCAGTGGA-
--GGAG------GTGGAGGCGGAGATCAGGGGGG-CGATCCAGGCGCAGCGGCGGCCCCGTTCATCATCGGGGTGCTCGG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCATGGGCGCATGGCCATGGGCGCGAGGAGCACCGCTGTG
GGTGTGTCCTGTGGCGTGGCGACC------------CTGTCCCGGG-CGTGGT---------GAGCACCACGGGCGCCT-
-----------------------CTCCTAGCGC---------------------------------CACGATGGTCGCGT
CCAGCGGCACGACGGATAGC------------------------------------------------------------
---------------CTGGCGACGGAACCGCCGGAGTCTACCCAGTCCATGGAAACGGCGA---------CCGTAGCGTC
GGCCATCCTCGTGGATCAGACGGAGGAAGAAGGAGACGAGGCTCGGCATCTCACCGGCGGCGAGTGCTCT--------TT
CCCTCCCTTTCT-TCTCTCTTTTTGCTCTTCGCTGGTTGTTCTACGTGCGTGATAACGTGTTCGAGATCGAAAG-TGAAA
TCTCTATCTTGATTGATGG-TTACAGGCGCTACTTATACCATCTGAAGAGACACGAGCGAGAAGG---------------
-----------------CGTCTATGCGAGACAAACCGCACAACAGTTTGGGCAAGGGGAGATTTTCTCTTAATTACAAAT
TGTAATTAATTCTAACAG--------------------------------------------------------------
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>chr6D_1
GCTCGGGCCTGCAGAAGCCTCCAGTGGTGGTGGGGAGTTGACGCCGGCACCTTCCATCCCTAATCCGAGGCGGATGACGC
CGGAGGTGCCGGCGGGCGCTGACACGAAGCCAAGCGCGGTCTCTTCATCCACAATGGCGCGCAACGGGACGGGCGCGTAG
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGGCGGGCGTCGGCGTCGAGGGCGGGAACCACGCGGCCGGTGGAG
GTGGAG------GTGGAGGCGGAGATCCGGGGGG-CGATCCAGGCGCAACGGCGGCCCTGTTCATCATCGGGGCGCTCGG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCATGGGCGCATGGCCACGGGCGCGGGGAGCACCACAGTG
GGCGCGTCCAGGAGCACGGGGACC------------GTGTCCAGGGGCTTGGT---------GAGCACCGCGACAGGCG-
-----------------------CATCCAGCGGCGCGGTGGCTGCCAGGGGCGGCACGT---------------------
---------------------------------------------------------CCAGCGGCGCTGCGGCCGAACCG
TCGGATGGCTTGCATCCGGCGACGGAAACGGCGGTGGCCACCAACTCCATGGCGGCGAAGGGCAATGAGGCGGTAGCGGC
GACCGTCCTCGCGGATCAGACGGAGGAAGAAGGAGACGAGGCCTGTCATCTCACCGGTGGCGAGTGCTTCCTCTCTTCTC
CTTTCT----CT-GTTGC-CTTTCGCTC-TCGCTGGCTGTTCTACGTGCGTGATAACGTGTTCTGAATCAAAAG-TGA-T
TGATTGTCTTGATCGATGG-TTACAG------------------------------------------------------
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>chr7B_1
GCTCGGGCCCGCAGTAGCCTCCAGTGGTGGTGGAGAGTTAACGCCGGCACCTTCCATCCCTGCTCCAAGGCAGATGACGC
CGGAGGCGCCAGTGGGCGCTGACACGAAGCCAAGCGCGGCCTCTTCGTCCACAATGGCGCGCATCGGGACGGGCGCGTAT
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGACGGGCGTCGGCGTCGCGGGCGGGAGCCACGCGGCCGGTGGAG
GAGGAG------GTGGAGGTGGAGATCCGGGGGG-CGATCCAGGCACATCGGCGGCCCCGTTGATCATCGGGGCGCTCGG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCGTGTGCTCATGGCCATGGGCGCGGGGAGCACCGCAGTG
GGCGCGTCCTGTGGCGCGGCGACC------------CTGTCCCGGGGCGTGGT---------GAGCACCACGGGCGCCT-
-----------------------CTCCTAGCGC---------------------------------CACGATGGTCGTGC
CCAGCGGCGCGACGGATAGC------------------------------------------------------------
---------------CTGGCGACGGAATCGCCGGAGTCTACCCAGTCCGTGGAAACGGCGA---------CCGTAGCGAC
GTCCATCCTCGTGGATCAGGCGGAG---GAAGGAGACGAGGCTCGGCATCTCACCGGCGGCGATTGCTCT--------TT
CCCTCCCTTTCT-TTTCT-TTTTCGCTCTTCGCTGGTTGTTCTACGTGTGTGATAACGTGTTTGAGATCGAAAG-TGAAA
TCTCTGTTTCGATTGATGG-TTACAGGCGCTACATATACCATCTGGAGAGACGCGATCGAAGGGAGGC------------
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>chr3A_1
GCTTGGGCCCGCAGAAGCCTCCAGTGGTGGTGGGGAGTTGACGCCGGCACCTTCCATCCCTACTCCGAGGCGGATGACGC
CAGAGGCGCCGGTGGGCGCTGACACGAAGCCAAGCGTGGCCTCTTCATCCACAATGGCGCGCATCGGGACAGGCGCGTAG
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGGCGGGCGTCGGCGTCGAGGGCGGGAGCCATGTGGCCGGTGGAG
G------------------CAGAGATCCGGGGGG-TGATCGAGGCGCAACGGCGACCCCGTTCATCATCGGGGCGCTCGG
GTCGGCCACCATCTGAGGGTCGAGCCCCATGGGCGCATGGCCATGGGCGC--------------GAGGAGCACCGCGGTG
GGCGCGTCCTGTGGTGCGGCGACC------------CTGTCCCGGGACATGGT---------GAGCACCACGGGCGCCT-
-----------------------CTCCTAGCGC---------------------------------CACGGTGGCCGCAT
CCAACAGCGCGACGGATAGC------------------------------------------------------------
---------------CTGGCGACGGAATCGCCGGAGTCTACACAGTCCGTGGAAACGGCGA---------CCATAGCGTC
GGCCATCCTCGTGGATCAGGCGGAGGAAGAAGGAGACGAGGCTCGGCATCTCACCGGCGGCAAGTGCTCTCCCCCCCTTT
CTTTCC----------TC-TTTTCGCTCTTCGCTGGTTGTTCTACGTGCGTGATAACGTGTTTGAGATCGAAAG-TGAAA
TCTCTGTATTGATTGATGG-TTACAGGCGCTACTTATATCATCTGGAGAGACGCCACCGAGAAGAGGCGTC---------
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>chr2B_1
GCTCGGGCCCGCAGAAGCTTCCAGTGGTGGTGGGGAGTTGACGCCGGCACCTTCCATCCCTACTCCGAGGCGGATGACGC
CGGAGGCGTCGGTGGGCGCTGACACGAAGCCAAGTGCGGCCTCTTCATCCACAATGGCACGCATCGGGACGGGCGCGTAG
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGGCCGGCGTCGGCGTCGAGGGCGGGAGCCACGCGGCCGGTGGCG
GTGGAG------GTGGAGGCGGAGATCCGGGGGGGCGATCCAAGCACAGCGGCGGCCCCGTTCATCATCGGGGCGCTCAG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCATGGGCGC--------------GAGGAGCACCGCGGTG
GGCGTGTCCTGTGGCGCGGCGACC------------CTGTCCCGGGGCGTGGT---------GAGCACCAGGAGCGGCG-
-----------------------C---------------------------------GTCCGTCAACGCCGTGGTCGCGT
CCAGCGGCGCGGTGACCACCACGGGCGCCATGTCCAGTGGCGCGGTGACCATAACGGCCAGCGGCGCAACGGCCGAAATG
GCGGACGGCCTGCATCCTGCGACGGAAACGTCGGAGGCCACCAACGCCATGGTAGCGGCGA---------CGGTAGCGAT
GACCGTCCTCATGGATCAGGCGGAGAAAGAAGGAAACAAGGCCAGGCATCTCATCGGCGGCGAGTGCTCCCTCTGTTCTC
CTCTCG----TT-GTTGC-CTTTCGCTC-TCGCTGGTTG-TCTACGTGCGTGATAACGTGTTTGAATCG--AAAGT-GAT
TGATTGTCTTGATCGGTGG-TTACAG------------------------------------------------------
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>chr5B_1
GCTCGGGCCCGCAGTAGCCTCCAGTGGTGGTGGAGAGTTGACGTCGGCACCTTCCATCCCTACTCCAAGGCGGATGACGC
CGGAGGCACTGGTGTGCACTGACACGAAGTCAAGTGCGGCCTTTTCGTCCACAATGGCGCACATCGGGGCAGGCTCGTAA
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGACGGGCGTCGGCGTCGCCGGCGGGAGCCACACGACTGGTGGAG
GAGGAG------GTGGAGGCGGAGATCCGGGGGG-CGATCTAGGCACAGCGGCGGCCCCGTTCATCATCGGGGCGCTCGG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCGTGTGCGCATGGCCATGGGCGCGGGGAGAACCGCAGTG
GGCGCGTCCTGTGGCGTGGCGACC------------CTGTCCCAGGGCGTGGT---------GAGCACCATGGGCGCCT-
-----------------------CTCCTAGTGC---------------------------------CACGGTGGTCGCTT
CCAGCGGCGCGACGGATAGC------------------------------------------------------------
---------------CTGGCGACGGAATCGCCGGAGTCTACCCAGTCCGTGGGAACGGCGA---------CCGTAGCGAC
GACCATCCTCGTGGATCAGGCGGAGTAAGAAGGAGATGAGGCTCGACATCTCACCGGCGACGAGTGCTCT--------TT
CCCTCCCTTTCT-TTTCT-CTTTCGCTCTTTGCTGGTTATTCTACGTGCGTGATAACATGTT------------------
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>chr7A_4
---CGGGCCCGTAGTAGCCTCCAGTGGTGGTGGGGAGTTGACGCCGGCACCTTCCATCCCTACTCCGAGGCGGATGACGC
---------TGGTGGGCGCTGACACAAAGCCAAGTGTGGCCTCTTCGTCCACAATGGCGCACATCGGGACGGACACGTAG
CCAGGAGGGCCACGGCTCGGG-CCAACAGCCTCATCGG-GGGCGTTGGTATCACGGGCGGGAGCCACGCGGCCGGTGG--
-AGGAG------GTGGAGGCGGAGATCCGGAGGG-CGATCCAGGCGCAACGGCGGCCCCGTTCATCATCGGGGCGCTCGG
GCCGGCCACCATCCGAGGGTTGAGCC--------------CCATGTGCGCATGGCCATGGGCGCGGGGAGCACCGCGGTG
GGCGCGTCTTGTGGCGCGGCGACC------------GTGTCCCGGGGTGTGGT---------GAGCACCACGAGCGCCT-
-----------------------CTCCTAGCGC---------------------------------CACGGTGGTCGCGT
TCAGCGGCGCGACGGATAGC------------------------------------------------------------
---------------CTGGCGACGGAATCGCCGGAGTCTACCCAGTCCGTGGAAACGACGA---------CCGTAGCGAC
GACCATCCTCGTGGATCAGGCGGAG---GAAGGAGACGAGGCTTGGCATCTCACCGGCGGCGAGTGCTCT--------TT
CCCTCCTTTTCTTTTTCT-CTTTCGCTCTTCACTGGTTGTTCTACGTGCATGATAACGTGTTTGAAATCAAAGACTGA-T
TGATCCTTTGA--TGATGG-TTACAGGGAGTATATATATCCCCTGGAGAGACACGACGA---------------------
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>chr2B_5
----GGGCCCACAGTAGCCTCCAGTGGTGGTGGAGAGTTGATGCCAACACCTTCCATCCCTACTCCAAGGCGGATGGCAC
TGGAGGCGTCGGTGGGCGCTGACACGAAGCCAAGCGCGACCTCTTCGTCCACAATGGCGCGTCTCCGAACGGGCGCATAA
CAAGGAGGGCCACGGCTCGGG-CCAACAGCCTCGCCGGCGGGTGTCGGCGTCGCGGGCGGGAGCCACGCGGTCGGTGGGG
GAGGAG------GCGGAGGCGGAGATCCGGGGGG-CGATCCAGGCACAGCGGCGGCCCCGTTCATCATCGGGGCGCTCGG
GCCGGCCACCATCCGAGGGTCGAGCC--------------CCATGGGCGATTGGCCACGGGCGCATGGAGCACCATCTTG
GG---------------------C------------GCGTCCAGGGGCGAGGG---------GAGCACCGCGGGGGGCG-
-----------------------CGTCCAGCAGCGAGGTGGCGGCCAGGAGCACCACTT---------------------
---------------------------------------------------------CCAGCGGCGCTGCGGCCGAATCG
AGGGATGGCTTGCATCCGGCGACGGAAACGCCGGAGTCCACCCACTCCATGGTAGCGACGA---------CGGTATCGAC
GACCATCCTCGCGGATCAGACGGAGGAAGAAGGAAACGAGGTTAGGCATCTCACCGGCGGCGCGTGCTCCCTCTCTTCTC
CTTTCTCTCTGTTGAT-TCTCTTTGCTC-TCGCTGGCTGTTCTACGTGTGTGATAACGTGTTTTGAATCAGAA-------
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>chr6A_13
------------AGAAGCCTCCAGTGGTGGTGGGGAGTTGATGCTGGCACCTTCCATCCCGACTCCGAGGCGGATGACGC
CGAAGGCGC-GGTGGGCGCCGACACGAAGCCAAGCACGGCCTCTTCATCCACAATGGCGCGCATCGGGACGGGCGCGTAG
CCAGGAGGGGCACGGCTCGGG-CCAACAGCCTCGCCGGTGGGCGTCGGCGTCAAGGGCGTGAGCCATGCGGCCGGT----
--GGAG------GTGGAGGCGGAGATCCGGGGGG-CGATCTAGGCGCAGCGGCGGCCTCGTTCATCATCGGGGCGCTCGA
GCCGGCCACCATCCAAGGGTCGAGCC--------------CCATGGGCGC--------------GAGGAGCACCGCGGTG
GGCGCATCCTGTGGCGCGGCAACC------------CTGTCCCGGGGCGTGGT---------GAACACCACGGGCGCCA-
-----------------------CGTCCAGTGGCGCGGTGACCATAAT--------------------------------
-------------------------------------------------------GGCCAGCGGCGCAACGGTTGAAACG
ACGGACGGCCTGCATCCTGCGACGGAAACGTCGAAGGCCACCAACGCCATGGTAGCGGCGA---------CGGTAGCGAC
GACCGTCCTCACGGAAATGTCG---------------AAGGCCAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTCTT
CTTTCTCTCTCT-GTTTC-CTTTCGCTC-TCGCTGGTTG-TCTACGTGC-TGATAACGTGTTTTGAATCGAAAG-TGA-T
TGATTGTCTTGATCGATGGTTTACAGAGAGTATATATATCCCCTAGAGAGATGCGACGA---------------------
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>chr3D_42
-----------------------------------------CGGCGGCGCCCTCCATGCCGACTCCAAGGCGGACGACAC
CAGAGGCGCCGGATGGAGCGGAGATGAAGGCGAGCGCTTCCTCTGCATTCACCGTCGAGCGCATCGGCACTGGGGCGTAG
CCAGGCGGGCGGAGGCTCGGG-CCAGCGGCCACGGCATCAGGCGTCGGCGTTGACGGCGGGATCCATGCGGCCGGC----
--GGAGGGGGTGGTGAAGGCGGAGACCCAGTGGG-CAGGGCAGGCGCGGTAGCGGCCCCGTGCATCATGGGGGCGCTCGG
GCCGGCCACTAGCCAAGGGTCGTACC--------------CCATGGGCGCCTGGCCACGAGCGCGGGGAGCACCGCAGTG
GGCGCGTCCAGGAGCACGGGAACC------------GTGTCCAGGGGCGTGGT---------GAGCACCGCGACGGGCG-
-----------------------CA---------------------------------T---------------------
---------------------------------------------------------CCAGCGGCGCTGCGGCCGAACCG
TCGGATGGCTTGCATCTGGCGACGGAAACGCCGGAGTCCACCCACTCCATGGTAGCGACGA---------CGGTATCGAC
GACCATCCTCGCGGATCAGGCGGAGGAAGAAGGAAACGAGGTTAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTTTC
CTTTCTCTGATG---TTT-CTTTTGCTC-TCGCTGGCTGTTCTACGTGCGTGATAACGTGTTTGAGATCGAAAG-TGAAA
TCTCTGTCTTGATTGATGG-TTACAGGCGCTACTTATACCATCTGGAGAGACGCGATCGAAGGGAGGCGTC---------
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>chr3D_42
-----------------------------------------CGGCGGCGCCCTCCATGCCGACTCCAAGGCGGACGACAC
CAGAGGCGCCGGATGGAGCGGAGATGAAGGCGAGCGCTTCCTCTGCATTCACCGTCGAGCGCATCGGCACCGGGGCGTAG
CCAGGCGGGCGGAGGCTCGGG-ACAGCGGCCACGGCATCAGGCGCCGGCGTTGACGGCGGGATCCATGCGGCCGGC----
--GGAGGAGGTGGTGGAGGCGGAGACCCAGTGGG-CAGGGCAGGCGCGGTAGCGGCCCCGTGCATCATGGGGGCTCTCGG
GCCGGCCACCAGCCAAGGGTCGTACC--------------CCATGGGCGCCTGGCCACGGGCGCGGGGAGCACCGCAGTG
GGCGCGTCCAGGAGCACGGGAACC------------GTGTCCAGGGGCGTGGT---------GAGCACCGCGACGGGCG-
-----------------------C---------------------------------GT---------------------
---------------------------------------------------------CCAGCGGCGCTGCGGCCGAACCG
TCGGATGGCTTGCATCCGGCGACGGAAACGCCGGAGTCCACCCACTCCATGGTAGCGACGA---------CGGTATCGAC
GACCATCCTCGCGGATCAGGCGGAGGAAGAAGGAAACGAGGTTAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTCTC
CTTTCTCTGATG---TTT-CTTTTGCTC-TCGCTGGCTGTTCTACGTGCGTGATAACGTGTTTGAGATCGAAAG-TGAAA
TCTCTGTCTTGATTGATGG-TTACAGGCGCTACTTATACCATCTGGAGAGACGCGATCGAAGGGAGGCGTCGGTTCCAGG
GGGCAGGAGCGAGAAGCCGCCTGTGCGGGACAAACCGCACGACGGTTTGGGCAAGGGGAGATTTTCCCCTAATTACAAAT
TGTAATTAATTCTAACA---------------------------------------------------------------
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>chr2D_53
----------------------------------------------------TCCATGCCTGCTCCAAGGCGGACGACTC
CGGAGGCACCGGTCGGCGCGGAGACGAAGGCGAGCGCCTCCTCCTCGTTCACGACGGCGCGCATCGGCACGGGGCAGTAT
CCGGGCGGGCCGT-------------CGGCCTCGGCGGCGGGCGTTGGCGTCGACGGCGCGAGCCACGCGGCCGGC----
--GGAGGAGGTGGTGGAGGCTGAGATCCAGGGGG-CGGTGCAGGCGCGGCTGCAGCCCTGTGCACCATGGAGGCGCTCGG
GCCGGCCACTAGCCAGGGGTCGAACC--------------CCATGGGCGCCGGGCCACGGGCGCCGGGAGCACCATCGTG
GGTGCGTCCAGGGGCGAGGGGAGCACCGCGGGGGGCGCGTCCAGCGGCGCGGTGGCGGCCAGGAGCACCACGTCCAGCGG
CGCGGTGGCGGCCAGGAGCGCCATC---------------------------------T---------------------
---------------------------------------------------------CCAGCGGCGCGGCGGCCGAATCG
ACGGATGGCTTGCATCCGGCGACGGAAACGCCGGAGTCCACCCACTCCATGGTAGCGACGA---------CGGTATCGAC
GACCGTCCTCGCGGATCAGGCGGAGGAAGAAGGAAACGAGGTTAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTCTC
CTTTCTCTGATG---TTT-CTTTTGCTC-TCGCTGGCTATTCTACGTGCGTGATAACGTGTTTGAGATCGAAAG-TGAAA
TCTCTGTCTTGATTGATGG-TTACAGGCGCTACTTATACCATCTGGAGAGACGCGATCGAAGGGAGGCGTC---------
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>chr5D_53
----------------------------------------------------TCCATGCCTGCTCCAAGGCGGACGACTC
CGGAGGCACCGGACGGTGCGGAGACGAAGGCGAGCGCCTCCTCCTCGT-CACGACGGCGCGCATCGGCACGGGGCAGTAT
CCGGGTGGGCTAT-------------CGGCCTCGGCGGCGGGCTTTGGCGTCGACGGCGCGAGCCACGCGGCCGGC----
--GGAGGAGGTGGTGGAGGCGGAGATCCAGGGGG-CGGTGCAGGCGCGGCTGCAGCCCTGTGCACCATGGAGGCGCTCGG
GCCGGCCACTAGCCAGGGGTCGAACT--------------CCATGGGCGCCTGGCCATGGGCGCAGGGAGCACCATCGTG
GGCGCGTCCAGGGGCGAGGGGAGCACTGCGGGGGGCGCGTCCAGCAGCGCGGTGGCGGCCAGGAGCACCACGTCCAGCGG
CGCGGTGGCGGCCAGGAGCGCCAC---------------------------------GT---------------------
---------------------------------------------------------CCAGCGGCGCGGCGGCCGAATCG
ACGGATGGTTTGCATCCGGCGACGGAAACGCCGGAGTCCACCCACTCCATGGTAGCGACGA---------CGGTATCGAC
GACCATCCTCGCGGATCAGGCGGAGGAAGAAGGAAACGAGGTTAGGCATCTCACCGGCGGCGAGTGCTCCCTCTCTTCTC
CTTTCTCTGATG---TTT-CTTTTGCTC-TCGCTGGCTGTTCTACGTGCGTGATAACGTGTTTTGAATCAGAATGATCGA
--ATCCCTTCA--CGATGATTTACAGGACGCTTATATATCTCCTGGAGAGACACGACGA---------------------
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>chr1A_874
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---------------------------------------AAGCCACGCTGTCATTTCTGCAGCAAACATCTCGTCTCAAT
CCCCGCGGATAAATACGCCCGCGTACAAC--TCACCTTCCCGTTCCCCTGTTAAACCCCACCGCACCGCACCGCACCTAT
-----------CCCGCACCGTAGCAACAGAAAGAAAAAGATCTC---------CTCC------GCCGCCGCCGCCGCCGC
AATGCAGCGCCTCTCCATCGGATCGCCGGGCTCGAGGCCCAGCCTGGATGCCGCCCCCGCCGCGGCCGCAGACGAGGCGG
ACGAGAAGGCGACGGGGAAGGCGGCCAGGGCGGCCGCGCCGGACAAGTCCATCCACCTCGTCCCCCTCCTCACGCTCCTC
TGCCTCCTCGTCCTCTTCCTCTTCTCCCACGACCCGGCCAGTTCCCGCGCCATCGCCGGTAAGTAGCCAGCCAAACCTTC
GCTCCACTCCCTTTCCCTCGCCGGCACTGCTCCTAACGCCGCTCGCCCGTCCGTGCAGATTCGCCGCCCGTCCTGGCCGT
CACCGCCCGCTCCCTCGAGGCCACAGGTAGGCGATAAGACTCGCGACGAACACC-----------CTGCGTCCCGTTCCC
CCATCTCTTGCCTCGTTTGATTTTCTCTCTCTCTCTCTCTCTCCTTTGTTCGTTCCTGCAGCGGACACGACGCCGTCGGT
GGCGCGGGGCGGCGCGCACCAGCGGCTGAAGGCGGACCCGACGCCGCGCCGCGGGCGAAGGCTGGGAGCGCCGCGGCGGT
GACGGCGACGGCGACGGCGCGGAATTGGGGAACGGGAAGGCTAAGGCTGGCCCACGTCCGCGCAAGCAGCTAGCCGTTGG
AACG---TACGACGCGTCCTCAGCGCACGTCTCTTTCTTCCCTCCACCCCCGTGCTGCGTCGTTGGTGGAACTTGAATGG
CCGCGAGCGTTCGTCTTCCTGTGGCCTCTA-GAAATTGGGATTAGATTACCAGCCGCCCGTCGCAATCGTCAATCACCAT
GTGTTCATACCCCATCGTCATTCTTTTCCCCCTTCGGTTGCTCACCTGCTATTGATTCTGTAATTCTTTTTCCGTAATTG
G---TAGTACTGATGAGGAAATTGATTGATAGAATTCTGGTTCAGGTGCGTCGGATTGTCCATCGTCTTTGAACTGGTTT
CTGTTTCTGCCTTTTGGGTT------------------------GAATG-------------------------------
---AATGGGCTGGTTCCAGC------TTTCGGGGCCAAGCTGCCGCAGGGGATCACGAGAAAATTTATTGCTCGGCAGCG
GTAAAGTGGACAGACAGG-------CCACAACATACTGGGCGCTGGTACATTCACGTTGCTGCTG-----CTAGTGCAAC
TAGGCCTGGCTGGCTTGGC------TTGGCTTGGACTGGGTCCACTGG--------------------------AAGCCT
CAGGTGTAACGACTATATATGTCCAAGCTGGAG-----------------------------------------------
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CCAATGCCCTCCATCTCTCACTTTTACAAGATTCAGAGAGACATTTACAGAATGCAAGTAATTAACCTTGAAAATGATCT
TTCTATAAGTATGTGCATCTTTCTATAAGTATAAGCTCTGCCACCGTGGGTATGCGATATGCCCGATCACATTTGCAAAC
AGATTTACCATCACGGATCGAGGGTGGTAGGCTCGCAGCGGGGCAGGCTAGCAGACAATAGCATAGTGCAAATGTAGCGT
TAATTCTAGACGAGTGATGAGCAAATTTTGGACTAATGGATGACTTTGGCGGGACAAAGAGGGATGCCGCTTGCACCCCT
ACACGCAGGGCAAACTGCATCTCCATGGACACTAGCAC-----------------AAAGCTTCGTATCTGAAACAAAAGC
AAGCAAGAAAATGAAAAAAGAATACGGCA---------------------------------------------------
---------------------TGGCAACAGCAGGAGATCCATATACAAGTGCTATCAGCAGCGC---------ACCCCAT
TC-CCCCGGCAAGTCACATCCACCGACAAGGAGCTTTAAACACAC-------
>chr1B_874
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---------------------------------------AAGCCACGCTGTCATTTCTGCAGCAAACATCTCGTCTCAAT
CCCCGCGGATAAACACGCCCGCGTACAACAATCACCTTCCCGTTCCCCTGTTAAACCCCATCCCACCGCACCGCACCGCA
CCGCACCTATCCCCGCATCGTAGCAACAGAAAGAAAAAGATCTC---------CTCCTTCTCCTCCTCCGCCGCCGCCGC
AATGCAGCGCCTCTCCATCGGATCGCCGGGCTCGAGACCCAGCCTGGATGCCGCCCCCGCCGCGGCCGCGGACGAGGCGG
ACGAGAAGGCGACGGGGAAGGCGGCCAGGGCGGCCGCGCCGGACAAGTCCATCCACCTCGTCCCCCTCCTCACGCTCCTC
TGCCTCCTCGTCCTCTTCCTCTTCTCCCACGACCCGGCCACTTCCCGCGCCATCGCCGGTAAGTAGCCAGCCAAACTTTC
GCTCCACTCCCTTCGCCTCGCCGGTCCTGTCCCTAACGCCGCTCGCGCGTCCGTGCAGATTCGCCACCCGTCCTGGCCGT
CACCGCCCGCTCCCTCGAGGCCACAGGTAGGCGATAAGAGTCGCGACCAACACAGCAGTCTCCGTCTGCGTCCCGTTTCC
CCTTCTCTTACCTCGTTTGATTTTC----TCTCTCTCTCTCTCCTTTATTCGTTCCTGCAGCGGACACGACGCCGTCGGT
GGCGCGGGGCGGCGCGCACCAGCGGCTGAAGGCGGACCCGACGCCGCGCCGCGGGCGAAGGCTGGGAGCGCCGCGGCAAT
------GACGGCGACGGCGCGGAATTGGGGAACGGGAAGGCTAAGGCTAGCCCACGTCCGCGCAAGCAGCTAGCCGTTGG
AACG---TACGACGCGTCCTCAGCGCACGTCTCTTTCTTCCCTCCACCCCCGTGCTGCGTCGTTGGTGGAACTTGAATGG
CCGCGAGCGTTCGTCTTCCTGTGACCTCTA-GAAATTGGGATTAGATTACCAGCCGCCCATCGCAATCGTCAATCACCAT
CTGTTCATACCCCATCGTCATTCTTTTCCG--TTCGGTTGTTCACCTGCTATTGATTCTGTAATTCTTTTTCCGTAATTG
GTAGTAGTACTGATGAGGTAATTGATGGATAGAATTCTGGTTCAGGTGCGCCAGATTGTCCATCGTCTTTGAACTGGTTC
TTGTTTTTGCCTTTTGGATT------------------------GAAATGAATGGGACGGGCGGGTAAACGAACGAGCGA
ATTAATGAGCTGGCTCCAGCGTTCGATTTCGGGGCCAAGCTGCCGCAGGAGATCACGGGAAAATTTATTGCTCGGCAGCA
GTCAAGTGGACAGACAGACCACAACCCACAACATACTGGACACTGGTACATTCACGTTGCTGCTGCTGTGCTAGGGCAGC
CAGGCCTGGGCGCCTGGCTGGTTAATTGGCTTGGATTGGATGCTCTGGCTCAACTTGAAAATGAACAGAGCCCCAAGCCT
CAGTTGTAACGATTATACCCAAGTTGGGGACAAATGCCCATTTCATACGGAAACCAATATTCAAAGAAAACTTTATGGAA
ACTACATTTTAAAAAAATTAAGAAAACTGGAAAAAAATATGGGATGCTAAGAGGGTGATGTTTTCTTACCACACAAAACG
TCAAGTTGAAACACATTACAAGATGTGAACTACTATGAAAAAATAATAATTCAGCACTGACTAGTGACGTTACTATTTGG
CACTATTCAATGCTGATTTTGTTATTTTCGCCGCTCACATTATATCCCGTAATGTGTTTGAACTTGGAATTTTTCATGGC
AATATAACACCACCCTCTTCTTTTTTTTCTTTTTTTTGCGAAAAATAACATCACCCTCTCAACGTCCCGTATTTTTTAGA
ATTTTTTGAAACTTCAAAACATCTTTTTCATGTAGTTTTCACCGGTTTTCATCAAATGTTGGTTTCTATATGATATTTTC
CCTATGCCCTCCATCTCTCACTTATGCAAGATTCGTGGTGATGTTGCACGGTCAACTTTGCGTCTCACGCATACACGCTG
CAAACACAGATT--------------------------------------------------------------------
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------------AACTGCATCTCCATGAACACTA---CCAGACTACGTACAGTACAAAGCTTCG--TCTGAAACAAAACC
AGGCAAGTAACAGAAGTGT----------------------------------GAGTGGCAATCGTCGGTGGTGCGCCGG
GGAGCACAGGCAACTGAGCAGTAGCCACAGCACGAGATCCATATACAAGTGCTATCAGCAGCGC---------ACCCCAT
TCCCCCCGGCAAGTCACATCCACCGACAAGGAGCTTTAAACAC---------
>SNPs
----------------S------S-----------------------------------S--------------------
------S---S---------------------------------------------------------------------
------------------S--S----------------------------------------------------------
-----------------------------S-----------------------------S--------------------
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---S------S---------------------------------------------------------------------
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--------------------S-----------------------------------------------------------
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--------------------S------------------------------------------S----------------
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-----S------------SSSSSSSSSSSSSSSSSSSSS---------------------------------------S-
-------------------------------S---------------------------------S--------------
--------------------------------------S-----SSSSSSSSS---------------------------
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----------------------------------------------------------------------------S---
----------------------------------------------------S---------------------------
----------------------------------------------S------S--------------------------
-------------------------------------S------------------------------------------
---S--S-----------------------------------------------------------S-------------
------------------------------------S-------------------------------------------
----SSS--------------------------------------S----------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------S-----------S------------------
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--------------S----SSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
----------------------------------------------------------------------S---------
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--------------S-----------------------------------------------------------------
----------------------S--------SSSSS--------------------------------------------
-------------------------S------------S-S---------------------------------------
----------S------------------------------------S-----------S--------------------
---------------------------------------------------------------S-S--------------
--S---------------S------S---SSSSSSSSSSSSSSSSSSSSSSSS---------------------------
----------------------------S-S------------S------------------SSSSSSSSSSS-------
---S-----------------------------------------SSSSSSS
>forward_944
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--------------------------------------------GAAGAGACGCGATCGAAGGC----------------
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>reverse_2272
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-------------------------------ACGGGCGGTTAACGAATGAA-----------------------------
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----------------------------------------------------
