>input_sequence_67126
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------------ATCGCCACCACCATCACTGTGCGTATCCGCCACCTTGGCCCGTTTTGAATGTGACAAAGAGAGGGAAA
------CCAAGCCAAGAACCCGGCCGGCCATGCCGAGGTCCTC------------------CTCCGCGCCCCGCATCCTC
GGCAGGGCCATGGCCATCCTCTCCCTGCCGCTCACCCCGCTCTCCAAGGCCAGGGCGGCGCGGACCCTGCTCCTCTTCAA
GAAGCGCCGCGCGCGCCGCCTGCGCCACTACAACTACGCCTACGTCGGCGAGTACCAGTTCTCGCCCTCCGGCTCCCCGC
TGCTCCTGCCCCGCCCGCCCGGCGTCTCCGCGTGGCGCGCCAAGCGGAGGAGCCGGGCCAGGACGGTCCTCGCCGCGCTC
CTCTGCGGCGGCGGGTGCGGC---------TTCGACGGCGACGGCGGGATCGACGTCGCCGTGCTCGACGGGCTGCTGCC
CCTGCCTCGGGCTCTGCAGGA---CGAG---CGGTCGGTTGACGACG---------------ACGGCGAGGAGGAAGCGT
GCGACGGCGAGGAGGAGGAGGAAGTGGAGGTGGAGTT------------------CGAGGGGGACGAGGAGGTGGACGGC
CGCGCGGAGCGGTTCATCGAGAGGTTCTACGAGGAGATGAGGATGCAGCAGCGGCGCCTCCTCTAGGCCG--GCCG----
GCCGGATCCATGGACGACTCTGTCTGCTCTGCATTTCGCCTTCGTTTCTTGCTCTTCATTGGTAGAATTGTCGCTAGCTA
TCTTGGCTGCAGTTCCTTCGGTTACAGTGTGTTTATTCTTGCTTCCTC--GCAGTGTTGTTGTAGTGTTCT----AGTAT
CATGTTCACTCGTGTGTCTGAATTTACCCAAAATTCCGTGCTGTTCAC-TTGCTGTGGTGTTGATAAA------------
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>chr3B_1_TraesCS3B01G047700
GCCTATCTTTAGTTGTACTAATTCTTCTCATAGAAATAGCCGCTGTCCAGTTGAGTCCATCTTCCAAACTCTTTGCTCAC
AGGGCTATGTAATCACTGTTGTACAATGTCTATGGGATGAATGGAATATTGGTGCCTCTGGTGCCCCTCTTTGTTCAAAA
AAAAAAAAAACGTACGCGTACGCGCGTGCTGGGATCTGAAAATAAATGGCGTCTCTCCTCAGGTCCGGTCAAGCGGCCAA
GGCCAGAAAGTTGGGGATGGTGGCCGTGACGCGAGCGGCATGGGGCTA-GGTTCGCTTTGGGACCCGAGAGGCGCCAACG
GCAACGGCTAGCTCGGTTCGAAAAGGGG--------TCGGTCGGACGGCCGGCCAGCTCAGAGCCACCGGCCTGGGCACG
GCGGAGTAG--GACGCTTTCCAGGCTGCGACCCCACGAGCACCACCACGCCCACGACCACCACGAGAGCCCGACCGCCTC
CGCTCCATCTCCTGACTCTCCCGGAGCGCGCCGTTGCCCACCCAACCAAGCGCGCGTAATCCGCC-------CTTGAACC
CCACGACCGGAATTAAGCTGGTGCAATCACACGCACGCACGCATTACTAGTTCATTTCATCACCGTAACCCTAACCC---
---GTATGCAA-GCACGGAACGGGGAC-------------------------------GAAAAAGGCTAC----------
GCGGTATACGACCCCGGCCGTGATGGTCGCCCGGGAAAATCACACGCACGTACACATTTACACTGCCG-----CTGTACT
CCACAAGACCA---TATCCTACTGTCTTCGCATTAAGAT--CCCACTGATCCAT--------------------------
----------------CGTGCGTACGCCAAGAAATCAGAGAGATGTCGTCAGGCAATACTAATGAGCGTGCAGATTTCGA
TTTCGTCGCA---ACCCCGAGATGC--------AAACTGTAAAGGCGCTTTAAGACGCGACGCAAAGCTTTCCTGTACGC
ACGCACGCACGCACGCACGATCGGACGAACGGCTAGCCCGAGCC---CGACCACGAGCCCATAAAACCACCCCACCTGCA
CAGGCAGCAACCATCGCCACCACCATCACTGTGCGTATCCGCCACCTTGGCCCGTTTTGAATGTGACAAAGAGAGGGAAA
------CCAAGCCAAGAACCCGGCCGGCCATGCCGAGGTCCTC------------------CTCCGCGCCCCGCATCCTC
GGCAGGGCCATGGCCATCCTCTCCCTGCCGCTCACCCCGCTCTCCAAGGCCAGGGCGGCGCGGACCCTGCTCCTCTTCAA
GAAGCGCCGCGCGCGCCGCCTGCGCCACTACAACTACGCCTACGTCGGCGAGTACCAGTTCTCGCCCTCCGGCTCCCCGC
TGCTCCTGCCCCGCCCGCCCGGCGTCTCCGCGTGGCGCGCCAAGCGGAGGAGCCGGGCCAGGACGGTCCTCGCCGCGCTC
CTCTGCGGCGGCGGGTGCGGC---------TTCGACGGCGACGGCGGGATCGACGTCGCCGTGCTCGACGGGCTGCTGCC
CCTGCCTCGGGCTCTGCAGGA---CGAG---CGGTCGGTTGACGACG---------------ACGGCGAGGAGGAAGCGT
GCGACGGCGAGGAGGAGGAGGAAGTGGAGGTGGAGTT------------------CGAGGGGGACGAGGAGGTGGACGGC
CGCGCGGAGCGGTTCATCGAGAGGTTCTACGAGGAGATGAGGATGCAGCAGCGGCGCCTCCTCTAGGCCG--GCCG----
GCCGGATCCATGGACGACTCTGTCTGCTCTGCATTTCGCCTTCGTTTCTTGCTCTTCATTGGTAGAATTGTCGCTAGCTA
TCTTGGCTGCAGTTCCTTCGGTTACAGTGTGTTTATTCTTGCTTCCTC--GCAGTGTTGTTGTAGTGTTCT----AGTAT
CATGTTCACTCGTGTGTCTGAATTTACCCAAAATTCCGTGCTGTTCAC-TTGCTGTGGTGTTGATAAATGTTGCCCAAGT
TCAAATCTGTATTTGGTGCTAGTAGTATTC----TTCAGTCATGGCAGCACGCCACACCACGCATCACAGATTCATAATC
TCCGTTCGAGTTCAGTTGTTTATATGAGTTC--------ATTTAAAAATCAAGAAGAAGAA--GA---------------
---------GAGCAAATCGTGGGAAAGTTGGCCGTAAACAATGTGTGATAAGAGCGTTTCTCTCAAGGCGCGGCTGCCTC
ATCTCCCATTGTTAAAACCAAAA-----AGTGCATCGAGGAGCGCTTTTCCGGATGCAGAGAATGCTCTCATCTGCTCTG
CTCTGCTCTGCTTCGAGAACCGGCGCCGTTTTGTTCTCTCTGATCATCGCCTGTTTCCTGCGCAGTTGTTCTACTTGAAC
CAACTCGAGCAAGTCCAGG-AAATGTACTATTGAAAATTCCAACTCGCTCACTCAGTGGGAGCTCGTTCACGGATCACAA
CGGCATGATGCCGGAAAGGTTCAAAGCGTTTGACACAAAGGTGTTCTCGTTTCTCAGAGGCCAGATTTGCCGAACAGGAA
TCGGGAATTCGGAGAGGCCATATGAGAAAGATGGGCGTGTTCAAAATGGAATGATCCTCTTTTCTCATGCTTGCAATTTT
GTTGTCCACAAACAAATAAAAAATCCGAAAAGACGTACGCATAACAGACTCGGTACCTAGGTCAATGGGCTCAGTGGAGA
ATTGCGTTACTTTTTTGCACAAAAATATTTAATATCACT-----------------------------------------
---------------------------------------------------------------------------AAAGA
AAATAAGTTTTTTTTTTCCTTTTG--------------------------------------------------------
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---------------------------GATGTACTACAGCCGTAGCATAAAAGAACCTT--------GCATTATTCAGTG
AAACGGCAGGAAACGCCCCTGAAGGTAAAAGAAAAGAGAACAGTGCATACACTTTTACCACGTTTCAGTTAGAC---AGT
AGCACACAAAAGGGAAAATAACCAGGGGGGGCGGGGGGGCGTCCATATTACTACATGACGCTGTACAAAATCTCACGCGG
AGGAATAGAGTACAT--ATCTGTAGAGTGTTATTCATGCGTGAT
>chr3D_241
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GGCCAGAAAGTCGGGGACGGTGGCCGTGACGCGAGCGGCATGGGGATGGGGTTCACTTTGAGGCTCCAGAGGCGCCAACG
GCAACGGCTAGCTCGGTTCGAAAAGGGG------------------------CCAGCTCAGAGCCACCGGCCTGGGTAGG
CACGGCGCGGAGACGCTTTCCAGGCTGCGACCCCACGAGT-CCACC---------ACCAGCACGAGAGCCCGACCGACTC
CGCTCCATCTCCT-----TCCTGGAGCGCGCCGTTGCCCA----ACCATGCGCGCGTAATCTGCTCTCGAGTCTTGAGCC
CCACGATCCGAATCAAGCTGGTGCAATCAC------GCACGCATTAG--------TTCATCACCGTAACCCTAAACC---
---GTATGCAAAACACGGAACGGGTCGCCGTTTCTCCCTTGCTAACACGGACGCCAAAGAAAAAAGCTACTGTAC-----
GCGGTATACGACCCCGGCCATGATGGTCGCCGGAGAAAAT----------TACACATTTACACTGCCGACTGGCTGTACT
CCACAAGCCCATACTATCCTACTGTCTTCGCATTAAGATATCCCACTGATCCGAGTGAGTGA-TGATCCATCACGAGGCC
TGCGTGCGTACTCCTACGTGCGTACGCCAGGAAGCCAGAGAGATCTCGTCAGGCAG---TAATGAGTGCGCAGATTTCGA
TTTCGTCGCAGCAGCCCCGAGATGC--------AAACCGTAAAGGCGCTTTAAGACGCAACGCAAAGCTTTCCTCTACGT
ACGCACGCACGATCGTC---TCGGGCGAACGGCTAGCCCGACGAGCTCGACCACGAGCCCATAAAACCACCCCACCTGCG
GC--CAGCAACCACCACCACCACGATCACTGTG----TCCGCCACCTTGGCCCATTTTGAATGTGACAAAGAGAGGGAAA
CCAAGCCCAAGCCAAGAACCCGGCCGGCCATGCCGAGGTCTTCTTCCTCCCCGTCCTCCTGCTCCGCGCCCCGCATCCTC
GGCAGGGCCATGGCCATCCTCTCCCTGCCGCTCACGCCGCTCTCCAAGGCCAGGGCGGCGCGGACCCTGCTCCTCTTCAA
GAAGCGCCGCGCGCGCCGCCTGCGCCACTACAACTACGCCTACGTGGGCGAGTACCAGTTCTCCCCGTCCGGCTCCCCGC
TGCTCCTGCCCCGCCCGCCCGGCGTCTCCGCGTGGCGCGCCAAGCGCAGGAGCCGGGCCAGGACGGTCCTCGCCGCGCTG
CTCTGCGGCGGCGGGTGCGGCCTCGGCGTCTTCGACGGGGACGGCGGGATCGACGTCGCTGTGCTCGACGGCCTGCTTCC
CCTGCCTCGGGCTCTGCAGGA---CGACGAACGGGCCGGTGAGGACGCCGCGTCGTACGGGTACGGCGAGC---AAGCGT
ACCACGGCGAGGAGGAGGAGGAGGAGGATGAGGAAGTGGAGGTGGAGTGCGAGGGCGGGGGGGACGAGGAGGTGGACGGC
CGGGCGGAGCGGTTCATCGAGAGGTTCTACGAGGAGATGAGGATGCAGCAGAGGCGCCTCCTCTAGCTCTATGCCG----
GCCGGATCCATGGACGACTCTGTCTG-TCTGCATTTCGCCTTCGTTTCTTGGTCT----TGGCAGAATTGTCGCTAGCTA
TCTTGGCTGCAGTTCCTTCGGTTACAGTGTGTTTGCTCTTGGTTCCTCTCGCACAGTGTTGCTGTTCAAGTAGTACGTAT
CATGTTCACTCATGTGTCTGAATTTACCCAAAATTCCTTGTTGTTGACTTTGTTGTGGTGCTGATAAACGTTCTCCGAGT
TCAAATCTGTATTTTGTGCTACT-------ATTCTTCAGTCATGCCAGTGCGGCACGCGTT-----ACAGATTCATGATC
TCCGTTCGAGTTCAGTTGTCTATATCCATTTAAATTTAAATTTAAAAATCAGAAGAACCGAAGGA---------------
---------GAGCAAATCATGGGAAAGTTGGCCGTATACAA--TGTGATAAGAGCGTTTCTCTCAAGGCGCGGTTGCCGT
ATCTCCCTTTGTTAAAAC---AA-----AGTGCATCGAGGAGCGCTTTTCCGGATGCAGAGAATGCTCG-----GCTCTG
CTCTGCTCTGCTTCGAGAACCGGCGCCGTTTTGT--TCTCTGATCCTTGCCTGTTTCCTGCCGAGTTATTATACTTCAAC
-AACTCGAGCAAGTCCAGGAAAATGCAGCATTGAAAATTCCACCATGCTCGCAAGGTGGGAGCTCGTTCACGGATCACAA
CGGCATGATGCCGGAAAGGTT-AAAGCGCTTGAGACAAAGGTGTTCTCGTTTTTCAGAGG--------------------
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>chr3A_298
TGGAGACTCGG---------------------------------------------------------------------
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--------------------------------------------------------------------GAGGCGCCAACG
GCAACGGCTAGCTCGGTTCGAAAAGGGGTCGGTCGGTCGGTCGGTCGGCCGGCCAGCTCAGAGCCACCGGCCTCGGCCCG
GAGAC---G--GACGCTTTCCAGGCTGCGACCCCACGAGCACCACC---------ACCAGCACCAGAGCCCGACCGACCC
CGCTCCATCTCCA---TCTCCTGGAGCGCGCCGTTGGGCA----ACCATGCGCGCGTAATCTGCTCTCGAGTCTTGAGCC
CCACGACCGGAATTAAGCCGGTGCAATCAC------GCACGCATTAC--------TTCATCACCGTAACAACCCTAACCC
GTAGTATGCAAAGCACGGAGCGGGTCGCCGTTTCCCCCTTGCTAACACGGACGGCAAAGAAAAAAAAGCTACGGTACGCG
GCGGTATACGACCCCGGCCATGATGGTCGCCGGAGAAAAT--CACGCATTTACACCGCCGCAGTGCCG-----CTGTAGC
ACACAAGGCCA----------------------TACGAC--CCCACTGATCCGAGTGAGTGAGTGATCCATCACGAGGCC
TGCGTGCGTACGC----------ACGCCAACAAGTCAGAGAGATATCATCAGGCAG---TAATGGTCGTGCA------GA
TTTCGTCGCG---GCCCCGAGATGGCGAGATGTAAACTGTAAAGGCGCTTTAAGACGCAACGCAAAGCTTTCGTGTACTG
T---ACGCACGCACGCACGATCGGGCGAACGGCTAGCCCGAGCC---------CGAGTCCATAAAACCACCCCACCTGCA
GC--CAGCCACCACCACCACCACGATCACTGTG----TCCGCCACCTTGGCCCAGTTCGAATGTGACAAAGAGAGGGAAA
CCAGA--CAAGCCAAGAACCCGGCCGGCCATGCCGAGGTCTTCTTCC---------------TCCGCGCCCCGCATCCTC
GGCAGGGCCATGGCCATCCTCACCCTGCCGCTCACCCCGCTCTCCAAGGCCAGGGCGGCGACGACCCTGCTCCTCTTCAA
GAGGCGCCGCGCGCGCCGCCTGCGCCACTACAACTACGCCTACGTGGGCGAGTACCAGTTCTCCCCGTCCGGCTCCCCGC
TGCTCCTGCCCCGCCCGCCCGGCGTCTCCGCGTGGCGCGCCAGGCGGCGGAGCCGGGCCAGGACGGTCCTCGCCGCGCTG
CTCTGCGGCGGCGGGTGCGGCTTCGGCGGCTTCGACGGGGACGGCGGGATCGACGTCGCCGTGCTCGACGGCCTGCTGCC
CCTGCCCCAGGCTCTGCAGGAGGACGAG---CGGGCGGCTGACGACGGCGCGTCGTACGGGTACGGCGAGGAGGAGGTGT
CCGACGGCGAGGAGGGGGTGGAGGTGGCGGAGGAGTT------------------CGAGGGGGACGAGGAGGTGGACGGC
CGCGCCGAGCGGTTCATCGAGAGGTTCTACGAGGAGATGAGGCTGCAGCAGAGGCGCCTCCTCTAGCTCTAGGCCGTGGT
GCCGGATCCATGGACGACTCTGTCTGCTCTGCATTTCGCCTTCGTCTTGG--TCTTCACTGGTAGAATTGTCGCTAGCTA
TCTTAGCTGCAGTTCCCTCGGTTACAGTGTGTTTGCTCTTGCTTCCTC--GCACAGCGTTGTTGTCCAAGTAGTAAGTAT
CATGTTCGCTCATGTGTTTGAATTTACCCAAAATTCCGTCTTGTTG---------TGGTGTTGATAAATGCTGTCCGATT
TCAAATCTGTATTTGGTGCTAGTAGTATTCATTCTTCAGTCATGGCAGTACGCCACACCACACACAAAA-ATTCATAATC
TCCGTTCGAGTATCTATTAC-----------------AAATTTAAAAATCAGAAGAACCGAAGGGGCGGAACAGCAGGTG
GTAAGCACGGAGCAAATCATGGGAAAGTTGGCCGTAAACAA--TGTGATAAGAGCGTTTCTCTCAAGGCGCGGTTGCCTT
ATCTCCCATTGTTAAAAC---AGAGTGGAGTGCATCGAGGAGCGCTTTCCCGGGTGCAGAGAATGCTC------------
--------TGCTTCGAGAACCGGCGCCGTTTTGT--TCTCTGATCCTTGCCTGTTTCCTGCCGAGTTGTTCTACTTGAAC
-AGGTCGAGCGAGTCCAGG-AAACGCAGCACTGAAAATTCCAACTCGCTCACTCAGTGGGAGCTCGTGCACGGATCACAA
CGGCTTGATGCCGGCAAGGTTAAA-GCGCTTGAGAGGTTTGCAAGTTCCGCAAAACAGATCCAGCAAAAAGGGAAGCGGC
GTTTTGGGTCCCGGGCTCATATGAGCCCCGGAGTGAATAGTAACGCCGTTTAAAATACTATAAATAATTTCAAAAAATTC
AAAAAAATATTATGGTGAAAGATGTTTGAGTGTGTGATGTCCGTGTCAGATTTGGTTATATTTGAACATTCAGGCAGCTC
GTGACAAAAAAAACGAATTCGGATTTGAGAGAAACATTTGAAATGCGGGATTTCACTGTTCATGCCTGAATTCGTCTTTT
TTTGGCCAGGCTCCTGGAATGTCCAAACGTCACCAAATTTTGCACGAACATCATGCACATGCACATCCTGCTTGCAAAAC
AAATACGATTTTTTTCTTTTTTTAATTGCGTTACTGTTCATCGGGCTCATCTGAGCATGGACACCAAATTGGATATCATG
GCAAAAGGTACATATCAATATAATATCAATATGATGCAGAGGCCGGGGGGGTTAACCTCCTTTCCGAAAAGAAAAGAAAA
TCTTAATGCATCCACCTTGATTTCTTCCATCATCGCTACACAAAAGGCAAAATGGCCTTGGACAACGTACACAGGAGCTC
CAGCAAAAATTGCTGAAGAGGAAATACGATGAACTACAACCGTACCATAAAAGCTTGCAAGTCCTTGGCATTATTCAGTG
AAACAGCTGGAAATGCCTCTGAAGGTTAA--AAAAAAGAGCAGTGCATACACTTTTAGCACGTTTCAGTTAGCCAGTAGT
AGTACACAAAAGGGAAAATAACCAGGGGGT----GGTGGCGTCCATATTACTACATGACGCTGTACAACATCTTCGGAGG
AGAAATAGAGTACATATATCTGCAAAGTGTTACTCATGCGTGA-
>SNPs
SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------S-----S---------------------------S-S------S-----S-S-S-S-------------
--------------------------------------------S-----------------------------------
-S--SSSS--------------------------------------SSSSSSSSS----S----------------S---
-------------SSS-----S------------------SSSS----S------------S--S------------S--
------------------------------SSSSSS-----------SSSSSSSS-------------------S-----
------------------------SSS-------------------------------------S---------------
-------------------S-----------S-S------SS------SS------------------------------
-------S--------------------------------------------SS--------------------------
---------------------------------S----------S----------SSSS---------------------
-------------S--------------------------------------------S--------------------S
------------------------S-------------------------------------------------------
SSSS---------S-S-------S---------SSSS----------------S--------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-----------------S--S-------------
-------------------------------------------------------------------------------S
--------------------------------------S--------------------------------S--------
----------------------------------S---S-----------------------------------------
S---------------------S-------S-------------------------------------------------
---------------------------------------------------S--------------SS-S----------
---------------------------------------------------S------S---------------------
----------------------------------SS-----------------SS--SS-SS-SS-SSSS----------
-----------S----------------------------S----S------S--------------------S--S---
------------------------------------------------S------------S--SS--------------
-------------------S-----SSS--S--------------------SS-SS-SSS--------------------
------------------S----------------------SS------------------------------S-----S
------------------SSS-----------------------------------------------SSSSSS------
----------------------------------SS---------S-S-------------SS-----------------
S------------------------S-SS---------------------------------------------------
---------------------S------S----S------------------S-----------SSSSSSS-S-SSS-SS
SSSSSSSS--SSS-SSS-SSSSSSSSSSS-SS-S-SS-SS-S-SSSS-SSSSS-SSSSSS-SSS-S--SSSSSS--S--S
SSSSSSSSSSS-SSSSS---S-SSSSSS-SS-SSSS-S-SSSSSSSS-SSSSSSSSSSSSS-SS-SSSSSSSS-SS-SSS
S-SS-SSS-SSSSSSSSSS-SS-SS-SSSSS-S-SSSS------------------------------------------
------------------------------------------------------------------------------SS
-----S-S-------S-SS----S--------------------------------------------------------
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-------------------------------S------S-----S--------SSSSSS---------------------
----S--S-----S---S--------S--SS----S---S-----------------S--------------S-------
--S--------------------------SSSSS--S-------------------------------S----SSS-S--
--S-------------------S-S-------S----------S
>forward_60
----------------------------------------CGCTGTCCAGTTGAGTCCAT--------------------
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>reverse_1703
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----------------------AGTGGAGGTGGAGTTCGAGG--------------------------------------
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>forward_145
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---------------------------------------------ATATTGGTGCCTCTGGTGCC---------------
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>reverse_2389
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--------------------------------------------------------------------TCATCTGCTCTG
CTCTGCTC------------------------------------------------------------------------
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