>input_sequence_67111
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---------------------------------------------------ATGGGAGCGGCATCACTGCTGTCATTTGC
CAATACCGCCCCCTTTATATTCAATCCCCCAACTTCTCCCACCTCCC-----------CCATCCCACCTCTTCTCTTCTC
CCAAGTCCCAACTCAAAGGCAAGCGCAGACCCAGCTCAGCTCAGGCAACAACAATCAGATCACACACAGGCTGCCTAATC
CTGCTCTTCGTTGGCGGTTTCTGTGCAGCCCGCCGAGCTCTTGCGAGAATATTGCAATGGCGTCCACGTCGAGCTCGACG
GCGGTGGACGAGAGGGAGCGGAAGCGGAAGAGGGCAGCCGGGGGTGATTCCACAGCGTCCGCCGGCCCGGGGACGGAGGC
GCAGCCTTCCAAGTGGCGGACGCAGCGCGAGCACGAGATCTACTCGTCCAAGCTCTTCGAGGCGCTCCGCCTTGTCCGAG
GCGGGTCATCGTCCGCGTCGACGGCGCCGGCGCGTGGCCGGGCCGTGCGGGAGGCCGCCGACCGCGCGCTCGCGGTGGCG
GCCCGCGGGCGCTCGCGCTGGAGCCGCGCCATACTCGCCTCCCGCCGCCGCCGCCTGCAGGCAGCCCACCGCGCGCGCCT
CCGCGCCCCAGCCACACCACCCGCGCGCCACCCCTCCGTCGCTGCCGCCGCGCAGCCGCAGCCGGGGAAGGCACCGGCGC
TGGCGAAGAAGGCGAAGGTGCTCGGGCGGCTGGTTCCCGGTTGCCACAAGCTGCCGTTCCCGGCGCTCCTGAGCGAGGCC
TCCGACTACATCAAGGCGCTGGAGATGCAGGTGCGCGCCATGACCGCTCTAGCCGAGGTCCTGGCGAGCGTCTCCTCGTC
GTCAGCCTCCGGCAGCTCCTCCTCGCCGGCATGA----------------------------------------------
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>chr4D_1_TraesCS4D01G182500
TTATCTTTTATGCATCTTATTTTGCTTAGTACGGCGGTAGCATTATAAGATGATCCATTCACTAAATTTCAAGGTATAAG
TGTTCTCCCTGAGTATGCACCGTTGCTACAGTTCTTCGTTTCGAGACACCACGTGATGATCAGGTGTGATAGACTCTACG
TTCACATACAACGGGTGTAAGACAGTTTTACACATGCAGAATACTTGGGTTAAACTTGACGAGACGAGCATGTACAGACA
TGACCTCGGAACACTGGAGACCGAAAGGTCAAACGTGAATCATATAGTAGATATGATCAACATAAAGATGTTCACCATTG
ATGATTACCCCATCTCATGGATTGTATTTTTAACTCTTGAAATATTATATGTC---TAAGAATATTATGTCACAAGGACC
TTAGGTCATACTATGCCGAAGTTCTTGAATTCGTATAAAATTCA--CATCCATTCCTATGTCCATATTTTCTGAAAGAAT
CAGATCTATTATAAAAAATTCATCGAAAGTAGAAAGTATCTCAAACATAATAAAAATTACATCAAAATTC-GAGACCATC
GAACGACCACTACAGCCGTCAGAACGAGTCGTTGCTCCCCTATCGTAGCCGGTTTGACCTTGTCGACGACAACCGAGACG
TCTTCGTCCACGCGCCCCTTATGTCCACGTTATCATAAAGTAAAAAAACAAATAAGCTCAAACATGATTATACATTTCCA
TGAAATTTTTAGCATGGCCTGAGAACAAGTGCACCTTGCCTTTTCGCTGCCATGAGCATGGAAGGAAGCAGAGCAAGAAG
CCTCCGGCTCCCTGATCCAGTTGGTGGACACTGAGCCACAAAGTCCAAACCCAGTGGACCTCATAATTAGCTGCTTGCTT
ACACCGAGTGTCACACATGCAAAATGGCTAGACCAAAAGCAAAGAAAATTCATTACTATACACTCAACCAACACGGCAGC
ACAGAGGAGAAG-----AAGAAGAAAAAAATCCGAAAGAGTCACATGACTAATGGGAGCGGCATCACTGCTGTCATTTGC
CAATACCGCCCCCTTTATATTCAATCCCCCAACTTCTCCCACCTCCC-----------CCATCCCACCTCTTCTCTTCTC
CCAAGTCCCAACTCAAAGGCAAGCGCAGACCCAGCTCAGCTCAGGCAACAACAATCAGATCACACACAGGCTGCCTAATC
CTGCTCTTCGTTGGCGGTTTCTGTGCAGCCCGCCGAGCTCTTGCGAGAATATTGCAATGGCGTCCACGTCGAGCTCGACG
GCGGTGGACGAGAGGGAGCGGAAGCGGAAGAGGGCAGCCGGGGGTGATTCCACAGCGTCCGCCGGCCCGGGGACGGAGGC
GCAGCCTTCCAAGTGGCGGACGCAGCGCGAGCACGAGATCTACTCGTCCAAGCTCTTCGAGGCGCTCCGCCTTGTCCGAG
GCGGGTCATCGTCCGCGTCGACGGCGCCGGCGCGTGGCCGGGCCGTGCGGGAGGCCGCCGACCGCGCGCTCGCGGTGGCG
GCCCGCGGGCGCTCGCGCTGGAGCCGCGCCATACTCGCCTCCCGCCGCCGCCGCCTGCAGGCAGCCCACCGCGCGCGCCT
CCGCGCCCCAGCCACACCACCCGCGCGCCACCCCTCCGTCGCTGCCGCCGCGCAGCCGCAGCCGGGGAAGGCACCGGCGC
TGGCGAAGAAGGCGAAGGTGCTCGGGCGGCTGGTTCCCGGTTGCCACAAGCTGCCGTTCCCGGCGCTCCTGAGCGAGGCC
TCCGACTACATCAAGGCGCTGGAGATGCAGGTGCGCGCCATGACCGCTCTAGCCGAGGTCCTGGCGAGCGTCTCCTCGTC
GTCAGCCTCCGGCAGCTCCTCCTCGCCGGCATGACCCACGCTTCGTGCATGATTCGTGTATTCGTTGTAAATTTCACCCC
ATCTTCCTCGTGGGTTGGATTAGTTAGCCTCTCCTCTCTAGTGTGTCCTCTTGTTTCTCAGGTTGGTTGAGCGGTTAGTG
---TGTTGGTGATAATGATGGCACTCTGGTGATTTAAACCGTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGTGCTGTAATGCC
TCTCTCTCTCTCTCTCGCTGTCTGGTTTTTTTTTTTTGAGGTATCTCGCTGTCTAG----------TTGTGGAGGCACAT
TCGTTTTGTTCTATTCTCTTCTCGCTTGGCTTTCTCCATCTCCTCGGGATTCTTTCGTGTGTTTGTTTCTTTTGTTCTCT
TTCGATCCCTTCTCTGATAAATGTAACAGGCATGGAT----AAATGTTCAGAGCGCTCCCTTCGTCGAGTACCGTGTGTG
TGTTCTTTCCTGCGCGCGATGCGGTGCATGCATGTCTCTCTTGCTTTCT----GTCCATGGGAAAGCGCGCTTAACCTCC
GAGTGTA--------TGTAACCTTCATCATCTCCTAATCATACTTACCGCGTGATCCTCTGCAACACGAGCCTGAATGAA
ATGATGCCATGGGTTCTCTGTTCCATCTCGGTAGGTAAATCACGTGTCCTGGATCCCAATCGTGACGCCCGAGCTGCAAT
GCAG-TATCAAAACCTCTCAAACC
>chr4A_338
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-----------------TGGATTGTATTTTTAACTCTTGAAGAATTCTACGTC--ATAAGAATATTATGTCGCAAGGACC
TTGGGTCATACTATGCCGAACTTCTTAAATTCGCATAAAAAATCCCCATTCATTCTTATGTTCATGTTTTTTGAAAGAAT
CAGGTCTATTATAAAAG-TTCATCGGAAGTAAAAAGTATCACAAAGATAATAAAAAATACATCAAGACTC-GAGACCACT
GAACGACCACTACAGCCGTAAGAACGAGTCGTTGCTCCCCTATCGAAGCCGGTTTGAGCTTGTCGACGACAACCGAGACG
TCCTCTT-CACGCGCCTCTTATGTCCATCTTATCATAAAGTAAAA----AAATAAGCTGAAACATGATTATACATTTCCA
TGAAATTTT-AGCATGGCCTGAGAGCAAGTGCACCTTGCCTTTTCGCTGCCACGAGCATGGAAGGAAGCAGAGCAAGAAG
CCTCCGGCTCCCCGATCCAGTTGGTGGACAGTGAGCCACAAAGTCCAAACCCGGTGGACCTCATAATTAGCTGCTTGCTT
ACACCGAGTGTCACACATGTAAAATGGATAGACCAAAAGCAAAGAAAATTCATTACTATACACTCAACCAGCACGGCAGC
ACAGAGGAGAAAAAAAAAAGAAGCCAAAAATCCAAAAGAGTCACATGACTAATGGGGGCGGCATCACTGCTGTCATTTGC
CAATACCGCCCCCTTTATATTCAATCCCCCAACTCCTCCCAAGTCCCACCTCCCCCATCCATCCCACCTCTTCTCCTCTC
CCAA-------CTCAAAGGCAAGCGTAGACCCAGCTCAGCTCAGGCAACAACAATCAGATCACA----GGCTGCCTAATC
CTGCTCTTCGTTGGCGGTTTCTGTGCAGCCCGCCGAGCTCTTGCGAGAATATTGCAATGGCGTCCACGTCGAGCTCGACG
GCGGTGGACGAGAGGGAGCGGAAGCGGAAGAGGGCGGCCGGGGGAGAGTCCACAGCGTCCGCCGGCCCGGGGACGGAGGC
GCAGCCTTCCAAGTGGCGGACGCGGCGCGAGCACGAGATCTACTCGTCCAAGCTCTTCGAGGCGCTCCGCCTTGTCCGAG
GCGGGTCATCGTCCGCGTCGACGGCGCCGGCGCGTGGCCGGGCCGTGCGGGAGGCGGCCGACCGCGCGCTCGCGGTGGCG
GCCCGGGGGCGCTCGCGCTGGAGCCGCGCCATACTCGCCTCTCGCCGCCGCCGCCTCCAGGCCGCCCACCGCGCGCGCCT
CCGTGCCCCAGCCACACCGCCCGCGCGCCACCCCTCCGTCGCTGCCGCCGCACAGCCGCAGCCGGGGAAGGCACCGGCGC
TGGCGAAGAAGGCCAAGGTGCTCGGGCGGCTGGTTCCCGGCTGCCACAAGCTGCCGTTCCCGGCGCTGCTCAGCGAGGCC
TCCGACTACATCAGGGCGCTGGAGATGCAGGTGCGCGCCATGACCGCTCTAGCCGAGGTCCTGGCGAGCGTCTCCTCGTC
GGCAGCCTCCGGCAGCTCCTCCTCGCCGGCATGACCCACGCTTCGTGCATGATTCGTGTATTCGTTGTAAATTTCACCCC
ATCTTCCTCGTGGGTTGGATTAGTTAGCCTCTCCTCTCTAGT-TGTCCTCTTGTTTCTCAGGTTGGTTGAGCGGTTAGTG
GTGTGTTGGTGATAATGATGGCACTCTGGTGATTTAAACCGTG-------------------------------------
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----------------------------------------------------------------------CTGTAATGCC
TCTCTC-------------------------------------TCTCGCTGTCTAG----------TTGTGGAGGCACAT
TCGTTTTGTTCCATTCTCTTCTCGCTTGGCTTTCTCC-TCTCCTCGGGATTCTTTCGTGTGTTTGTTTCTTTTGTTCTCT
TTCGATCCCTTCTCTGATAAATGTAACAGGCATGCATGGAGAAATGTTCAGAGCGCTCCCTTGGTCGAGTACCGTGTGT-
---TGTTTCCTGTGC-----GCGGTGCATGCATGCCTCTCTTGCTTTCTTTCGGTCCATGGGAAAGCGCGCTTAACCTCC
GAGTGTAGTACAGTATGTAACCTTCATCATCTCCTAATCATTCTTACCGCCTGATCCTCTGCAACACAAGCCTGAATGAA
ATGATGCCATGGGTTCTCTGTTCCATCTCGGTCGGTAAATCATGTGTCCTGGATCCCAATCGTGACGCCCGAGCTGCAAT
GCA-CTATCAAAATCTCTCAAACC
>chr4B_344
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-----------------------GTATTTTTAACTCTC-AAGAATTCTACGTTTAATAAGAATATTATTTCAGAAGGACC
ATGGGTCATGCTATGCGTAAGTTCTTAAATTCGTATAAAATTCA--CATTAATTCCTATGTCCATGTTTTTTC-AAGAAT
CAGATCTATTATAAAAG-TTTATCGAAAGTACAAAGTACCTCAAATATAATAAAA-TTACATCAAGATTCTGAGACCATC
GAACGACCACTACTGCCGTCAGAAAGAGTCATCGCTCCCCTATCAAAACCGGTTTGACCCTGTTGAGGACAGCCGGGACG
TGTTCGTCCACGCGCCCCTTATGTCCATGTTATCATAAAGTAAAA----AAAGAAGATCAAACATGAGTATACATTTCCA
TGAATTTTTTAGCATGGCCCGAGAACAAGTGCATCTTGCCTTTTCGCTGCCATGAGCATGGAGGGAAGCAGAGCAAGAAG
CCTCCGGCTCCCTGATCCAGTTGGTGGAGAATGAGCCACAAAATCCAAACCCAGTGGACCTCATAATTAGCTGCTTGCTT
ACACCGAGTGTCACACATGCAAAATGGATAGACCAAAAGCAAAGAAAAATCATTAATATACACTCAACCAACACGGCAGC
ACAGAGGAGAAAAAAAAAAGAAGCCAAAAATCCAAAAGAGTCACATGACTAATGGGGGCGGCATCACTGCTGTCATTTGC
CAATACCGCCCCCTTTATATTCAATCCCCCAACCTCTCCCACCTCCC-----------CCGTCCCACCTCTTCTCCTCTC
CCAAGTCCCAACTCAAAGGCAAGAGCAGACCCAGCTCAGGAGAG------ACAATCAGATCACA----GGCTGCCTAATC
CTGCTCTTCGTTGGCGGTTTCTGTGCAACCCGCCGAGCTCTTGCGAGAATATTGCAATGGCGTCCACGTCGAGCTCGACG
GCGGTGGATGAGAGGGAGCGGAAGCGGAAAAGGGCAGCCGGGGGTGAGTCCACAGCGTCCGCCGGCCCGGGGACGGAGGC
GCAGCCTTCCAAGTGGCGGACGCGGCGCGAGCACGAGATCTACTCGTCCAAGCTCTTCGAGGCGCTCCGCCTTGTCCGAG
GCGGGTCATCGTCCGCGTCCACGGCGCCGGCGCGTGGCCGGGCCGTGCGGGAGGCGGCCGACCGCGCGCTCGCGGTGGCG
GCCCGCGGGCGCTCGCGCTGGAGCCGCGCCATACTCGCCTCCCGCCGCCGGCGCCTGCAGGCCGCCCACCGCGCGCGCCT
CCGCGCCCCAGCCACACCGCCCGCGCGCCACTCCTCGGTCGCTGCCGCCGCACAGCCGCAGCCGGGGAAGGCACCGGCGC
TGGCGAAGAAGGCGAAGGTGCTGGGGCGGCTGGTTCCCGGCTGCCACAAGCTGCCGTTCCCGGCGCTCCTGAGCGAGGCC
TCCGACTACATCAAGGCGCTGGAGATGCAGGTGCGCGCCATGACCGCTCTAGCCGAGGTCCTGGCGAGCGTCTCCTCGTC
GTCAGCCTCCGGCAGCTCCTCCTCGCCGGCATGACCCACGCTTCGTGCATGATTCGTGTATTCGTTGTAAATTTCACCCC
ATCTTCCTCGTGGGTTCGATTAGTTAGCCTCTCCTCTCTAGTTTGTCCTCTTGTTTCTCAAGTTAGTTGAGCGGTTA---
GTGTGTTGGTGATAATGATGGCACTCTGGTGATTTAAACCATG-------------------------------------
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----------------------------------------------------------------------CTGTAATGCC
TCTCTC-------------------------------------TCTCTCTCTCTCTCGCTGTCTACTTGTGGAGGCACAT
TCGTTTTGTTCTATTCTCTTCTCGCTTGGCTTTCTCC-TCTCCTCGGGATTCTTTCGTGTGTTTGTTTCTTTTGTTCTCT
TTCGATCCCTTCTCTGATAAATGTAACAGGCATGGAT----AAATGTTCAGAGCGCTCCCTTCGTCGAGTACCGTGTGT-
---TCTTTCCTGCGCGCGGTGCGTTGCATGCATGTCTCTCTTGCTTTCT----GTCCATGGGAAACCGCGCTTAACCTCC
GAGT--------GTATGTAACCTTCATCATCTCCTAATCATACTTACCGCGTGATCCTCTGCAACACAAGCCTGGATGAA
ATGATGTCATGGGTTCTCTGTTCCATCTCGGTAGGTAAATCATGTGTCCTGGAACCCAATCGTGACGCCCGAGCTGCAAT
GCAGCTATCAAAATCTCTCAAACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS------------------------SS---S--S------------------------------
--S-----------------------S----------------------S---------------S----S---------
----------------SS-------------S-------------S-------------------S--------------
---------------------------------------------S----------------------------------
---------------------------S-----------------SSSS-------------------------------
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------------------------------S-------------------------------------------------
---------------------------S----------------------------------------------------
-----------S-----------SS--------S----------------------S-----------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------SSSS------------
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-----------------------------------------------S--------------------------------
-----------------------S--------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------S-----------------
------------------S--------------------------------S----------------------------
----------------------------------------S---------------------------------------
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------------------------------------------S-------------------------------------
-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
-------------------------------------S------------------------------------------
-------------------------------------------------------------------------------S
SSS---------------S-------------------------------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------S-------------------------------------
-------------S----------
>forward_266
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------CGGAACACTGGAGACCGAAA------------------------------------------------------
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>reverse_1188
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-------------------------------------------------------------------AGGCTGCCTAATC
CTGCTCT-------------------------------------------------------------------------
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>forward_1116
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--------------------------------------------------------CCCCATCCCACCTCTTCTCT----
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>reverse_2385
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----------------------------------------------------------------ACCGTGCTGTAATGCC
TCTC----------------------------------------------------------------------------
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