>input_sequence_67105
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------------------------------------------------------------------ATGGCCAGTGGCAG
CCCCACAACTACCTCCAGCTCCCTGCTCCTCTTCTTCCTCCTCTCTTGCTTGCTCATCGGCCATGCTCTCTGCAACCAAG
GCCACCATGGCAGCATCTCAGGTTTCACCTCTGCACTACAAATACTGAGTGCTCTTTCTCTGTTCTTGCATGAGATTGGC
TTGTTTTCTTTTTCTTTCTTTAGTGTGCATATGTTCACTATGTATTCACTAGTTTCACTTCAATCTACTGTCCAGGTGCA
GACTATGGAGAACAATATGCTCACCAGGGATTACCTGAAGAACATACGGACTTGCAAGAGAACATCAAGGTACATATGCC
ATCTAGTCAGTACTAAGTGCCGTTCTTATAGGTACTATATTTTCTAGTGTTTTCAGCACATGATAAATAATGCCTGAATA
AAGATTCTGTAAACTTCAACTTGCTTGAAATACTACATACCTGTCTATGGAGTTTTTGGTAAGCAGACTGATAGAAAGAG
GAAACAGTAGCCACTTGCCTCCTTCCTTGCTCCTACAGTTAGTACGAGAAGCTCTAAGAACAAGAGCAAAAC-AGCATGG
GTGCG--------GGATATGCAAGTTAATTCGGAAAATGGGGCCCATGACATGGCCATCTGAAAGCAACAATAACTAACA
TGATGTTCACATGCTTCACAGCAGGGTCTAAACAAGGAGAAACCGCCCAAGTATGCAAGGAGAATGCTGATTGGTTCAAT
TGCTCCCATATGCACGTACAACGAATGCAGGGGGTGTCGATCCAAGTGTACTGCTGAGCAAGTTCCGGTGGATGCAAATG
ACCCCATGAATAGTGCCTATCATTACAAGTGTGTCTGCCACAGGTGA---------------------------------
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>chr3B_1_TraesCS3B01G455300
GGCAAGCCCACGCCGTCGTGCTCAAGGAGGAGAGGAGAGCGAGAGAAGAAAACAAGAACTAGGCTGGGAGAAACGCAGAA
ATCCAAGCACCCCCGCCACGCTGCTCTCTCCGGAATGCAGAATCCAAGCATCTTCACCCCGACTGCTTTTCCAGTTCCCA
CAC-----------TCCTCTGGCATATACAAACATACACCTCTGCATGTTCAGAGATGATACGCCATGCCTGTGTGCTCT
GCTTCCTCTTGGCCTTCACCGCCATTAACCATCCCAAGCATCCTAGGTAGGTAGTTCCTTGAAGCATGCACGTCCTTTAA
CTGAACATAGGTTTCCTCTTCTCCCTCAGGGTTTTCCTTGAAGCATGTTCTTTCGCTGATTATTAGGTTTACTACTATTC
CCACATAGATTTTGCGCACTGTGTCCGCCGTTTCGATGTTGCATATGATTGGCGCAAATAATTGACCCATCTCCCCTT-C
CCTCCATAACCTCTGGCTCTGTAGAGCAGAAGGAACAAAAAGAGGTGAGCAAAGCGGCTAATGAAGCATATTATTGGACT
CCTTAAGTTCAAAACTGAGATAAATAAAGAAAATAAGATGGGTGCAGAGAAGGCACATGTGCGGCAAGAAGGGACAAAGG
TGGTGCGGTGCAAAAACAATGCAAGGACGGTCCCCCGTTGCTAAGTTTCAGAGGCCTCTGTTATCCCGTGTGTGCGTGCA
TACGAGAGAGAGCG-GAGCCACCTGTTGGTGGTCACCTCAGTCCCCACTGCGCCCCTCTCTACAGTCTACACCATCGTCT
GCATGGTATGGCACAGGGATATGCA--------TACATATGCTAGGCAACAGCAGAGCCACAAGGCAACACACACATACG
CACAAGAGCTCTTGCAGTATTGCACCCGTCTGCCATCTATATAGCCTCTAGCATTTGCTCCCTTAAGCTGTTTCTCTAAT
TCCAAGCATACTA-----CCATCCTCCCGTTCCCTATCCATCTTCTCATTTTGGAGAAGGGGGGTTATGGCCAGTGGCAG
CCCCACAACTACCTCCAGCTCCCTGCTCCTCTTCTTCCTCCTCTCTTGCTTGCTCATCGGCCATGCTCTCTGCAACCAAG
GCCACCATGGCAGCATCTCAGGTTTCACCTCTGCACTACAAATACTGAGTGCTCTTTCTCTGTTCTTGCATGAGATTGGC
TTGTTTTCTTTTTCTTTCTTTAGTGTGCATATGTTCACTATGTATTCACTAGTTTCACTTCAATCTACTGTCCAGGTGCA
GACTATGGAGAACAATATGCTCACCAGGGATTACCTGAAGAACATACGGACTTGCAAGAGAACATCAAGGTACATATGCC
ATCTAGTCAGTACTAAGTGCCGTTCTTATAGGTACTATATTTTCTAGTGTTTTCAGCACATGATAAATAATGCCTGAATA
AAGATTCTGTAAACTTCAACTTGCTTGAAATACTACATACCTGTCTATGGAGTTTTTGGTAAGCAGACTGATAGAAAGAG
GAAACAGTAGCCACTTGCCTCCTTCCTTGCTCCTACAGTTAGTACGAGAAGCTCTAAGAACAAGAGCAAAAC-AGCATGG
GTGCG--------GGATATGCAAGTTAATTCGGAAAATGGGGCCCATGACATGGCCATCTGAAAGCAACAATAACTAACA
TGATGTTCACATGCTTCACAGCAGGGTCTAAACAAGGAGAAACCGCCCAAGTATGCAAGGAGAATGCTGATTGGTTCAAT
TGCTCCCATATGCACGTACAACGAATGCAGGGGGTGTCGATCCAAGTGTACTGCTGAGCAAGTTCCGGTGGATGCAAATG
ACCCCATGAATAGTGCCTATCATTACAAGTGTGTCTGCCACAGGTGATCATTGATGGTTAGTAGGAGCTTCTATGATATG
ATATGTCTAGTGGAGAGTAGTAGTTTTCCTTCAGTCTCCCCTTCTTTTCCTTCTATTCTCTTTCTCTGTTAAAAAGGCTT
CTTCTTTTTTTCCTTTTTCTTTTTTACTAGAGGTTAACTAGTAGCAGACTGGAGGGGCATTTTGTACTGTAAGATGTCTA
GTTCAGCTTGTGAACTAGTAATTTTGAGAGTGAATGGTCTGAAATTTTGATATCGGAAAACCAGCTTGGCTGTGCAGATA
ACCAGTTTCTTCGTTAATGCTCCCTCCGTCCCAAAATAAGTGTTGCTGGTTTAGTACAAAGTTAGTACAGCTTTGTACTA
AATCAGCGACACTTATTTCAAGACGGAGGGAGTATATTGCAACTAGAAATCAAATCTATAAGCAGACCCCGATGTGTTCT
TCTGCTTGAATAGGCTTAGAACTTCAGACTTGATCTTCTGGACTGTTGGTCTCCAACTGTGCAGTGTATAAATGCTGTAA
ACGTTCGTATGTTCCACCAGAAGTTGACAGTATCTTCTCTAGTCTCTACCCTGGGCATCTTCAGCTCTCGTGGGATTTTG
TGCCATCCCTCTTTCCATGTAACAACGTC----------ACCACCTGTACTGTACAAGGGAGCAGTAGATTCATATTGAC
AAATCAGAGAAGAAAGAAGATGGTGACTTCTGTGCAGACTGCATTTCCTCAGCAGAGCAGGCTTCATCTGTTGAATTTAA
CCAACCAGGTCTAGTTTCATGTATGTACCACATTTTTACGC--AAAAGCTATAGCATAGGTAATAAACAATCCAGTACCA
AACAGAGCATTTATTTTGCAAGCAGAGAGGCCGCAGGGTGCCTTGTATGCATTCAACAAAAGAACAGTTGAAGATTTGTC
CCAATAGGAAATATTTATTACCAATAGCTCTTTACTG---GAGGGGTAAGGATGCTTATATACAACGGGACACTCTGGAG
TAACTCATGTATATTTGAACGA
>chr3A_1
GGCAAGCCCACGCCGCCGTGCTGA--------AGGAGAGCGAGAGAAGAAAACAAGAGCTAGGCTGGGAGAAACGCAGAA
ATCCAAGCACCTCCGCCACGCTGCTCTCTCCGAAATGCAGAATCCAAGCATCTTCACCCGAGCTGCTTTTCCAGTTCCCA
CACCCTCCTCTCGGTCCTCTGGC--ATACAGACATACACCTCTGCATGTTCAGAGATGATACGCCATAAAT-----CTGT
GCTTCCCCTTGGCTTTCACCGTCATCACTAC-CCCAGGCATCCTAGGTAGTTAGTTCCTTGAAGCATG----TCCTTTAA
CTGAACATAAGTTTCCTCTTCTCCCTCAGGGTTTTCCTTGAAGCATGTTCTTTCGCTGATTATTAGGTTTACTACTATTC
CCACATAGATTTTGCGCACTGTGTCCGCCGTTTCGATGTTGCATATGATTGGCGCAAATAATTGGCCCATCTTCCCTT-C
CCTCCATGGC--CTGCCTCTGTAGAACAGAAGGAACAAAAAGAGGTGAGCAGAACGACTAATGAAGCACATTATTTGACT
ACTTAAGTTCAAAACTGGGATAAATAAAGAAAATAAGATGCGTGCAGAGAAGGCACATGTGTGGCAAGAAGGGACAAAGG
TGATGCGGTGCAAAAACAATGCAAGGACGGTCCCCCGTTGCTAAGTTTCAGAGGCCTCTGTTATCCCGTGTGTGCGTGCA
TATGAGGGAGAGCG-GAGCCACCTGTTGGTGGTCACCTCAGTCCCCACCCCGCCCCGCCCCTC--TCTACACCATTGTCT
GCATGGTATGGCACAAGGATACGCACACATAATTACATATGCTAGGCAACAGCGGAGCCACAAGGCAACGCACGCATACG
CACAAGAGCTC--------TTGCACCCGTCTGCCATCTATATAGCCTCTAGCACTTGCGACCTTAAGCAGTTTCTGTAAT
TACAAGCACACCTCCATTCCATCCTCCCGTTCCCTATCCATCTCTCCATTTTGGAGAAGGCGGGTTATGGCCGGTGGTAG
CCCCACAACTACCTCGAGCTCCCTGCTCCTCTTCTTCCTCCTCTCTTGCTTGCTCATCGGCCAGGCTCTCTGCAACCAAG
GCCACCATGGTAGCATCTCAGGTTTCACTTCTTCACTGCAAATACTTTGTGTTCTTCGTTTGTTCTTGCATTAGAATGGC
TTGTTTTCTTTTTCTTTCTTTAGTGTGCATATGTTCACCATGTATTCACTAGTTTCACTTCAATCTACTGTACGGGTGCA
GACTATGGAGAACAATATGCTCACCAGGGATTACCTGAAGAACATATGGACTTGCAAGAGAACATCAAGGTACATATGCC
ATCTAGTTAGTACTAAGCGCCGTTCTTATAGGTACTATA----------------GCACATGATAAATTATGCTTGAATA
AAGATTCTGTAAACTTCAACTTGCTTGAAATACTATATACCTGCCCATGGAGTTTTTGGTAAGCGGACTGATAGGAAGAG
GATACAGTAGCCAACTTGCC---TCCTTACTCCTACAGTTAGTACGAGAAGTTCTTAGAACAAGAGCAAAAAGAGCATGG
GTGCAGCCGTGCAGGATATGCAAGTTAATTTGGAAAATGGGGCCCATGACATAGCCATCTGAAAGCAACAATAACTAACA
TGATGTTCACATGCTTCACAGCAGGGTCTAAACAAGGAGAAGCCGCCCAAGTATGCAAGGAGAATGCTGATTGGTTCAAT
TGCTCCCATATGCACGTACAACGAATGCAGGGGTTGTCGATCCAAGTGTACCGCTGAGCAAGTCCCGGTGGATGCAAATG
ACCCCATGAATAGTGCCTATCATTACAAGTGTGTCTGCCACAGGTGATCATTGATGGTTAGTAGGAGCTTCTATGATATG
ATATGTCTAGTAGAGAGTAGTGGTTTTCCTTCAGTCTCCTCTTCTTTTCCTTCTATTCTCTTTCTCTGTTAAAAAGGCTT
CTTCTTTTTT-CCTTTTTCTTTTTTACTAGAGGTTAACTAGTAGCAGACTGGAGGGGCATTTTGTACTGTAAGATGTCTA
GTTCAGCTTGTGAACTAGTAATTTTGAGAGTGAATGGTCTGAAATTTTGATATCGGAAGACCAGCTTGGCTGTGCAGATA
ACCAGTTTCTTTGTTAATACTCCCTCCGTCCCAAAATAAGTGTCGCTGGTTTAGTACAAAGTTAGCACAGCTTTGTACTA
AATCAGCGACACTTATTTTGAGACGGAGGGAGTATATTGCAACTAGAAATCAAATCTATAAGCAGACCTCGATGTGGTCT
TCTGCTTGAATAGGCTTAGAACTTCAGACTGGATCTTCTACAC----GGTCTCCAACTGTGCAGTGTATAAATGCTGTAA
ACGTTCGTATGTTCCACCAGAAGTTGACAGTATCTTCTCTA-------CCCTGGGCATCTTCAGCTCTCGTGGG-TTTTG
TGCCATCCCTCTTTCCATGTAACAA----------AACAACCACCTGTACTGTACAAGGGAGCAGTAGATTCATATTGAC
AAATGAGAAAAGAAAGAAGATGATGACTTCTGTGCAGACTGCATTTCTTCAGCAGAGCAGGCTTCATGTGTTGAATTTAA
CCAACCAGGTCTAGTTTCATGTATGTACCACA-TTTTACGC--AAAAGCTGTAGCATAGGTAATAAACAACCCAGTACCA
AACAGAGCATTTATTTTGCAAGCAGAGAGGCTGCAGGGTGCCTTGTATGCATTCAACAAAAGAACAGTTGAAGATTTGTC
TCAATAGTGAATATTTATTACCAATAGCTCTTTTACTGGAGAGGGGTCAGGATGCCTCTATACTACGGGACACTCCGGGG
TAACTCATGTATATTT------
>chr3D_34
---------------------------------GGAGAGCGAGAGAAGAAAACAAGAGCTAGGCTGGGAGAAACGCAGAA
ATCCAAGCACCCCCGCCACGCTGCTCTCTCCGAAATGCAGAATCCAAGCATCTTCACCCGAGCTGCTTTTCCAGTTCCCA
CACCCTCCTCTCAGTCCTGTGGC--ATACAGACACACACCTCTGCATGTTCAGAGATGATACGCCATAAAT-----CTGT
GCTTCCCCCTGGCTTTCACCGTCATCACTAC-CCCAAGCATCCTAGGTAGTTAGTTCCTTGAAGCATG----TCCTTTGA
CTGAACATAAGTTTCCACTTCTCCCTCAGGGTTTTCCTTGAAGCATGTTCTTTCGCTGATTATTAGGTTTACTACTATTC
CCACATAGATTTTGCGCAATGTGTCCGCCGTTTCGATGTTGCATATGATTGGCGCAAATAATTGACCCATCTTCCCTTTC
CCTCCATAACCTCTGGCCCTGTAGAGCAGAAGGAACAAAAAGAGGTGAGCAAAGCGGCTAATGAAGCATATTATTGGACT
CCTTAAATTAAAAACTGAG----ATACAGAAAATAAGATAGGTGCAGAGAAGGCACATGTGCGGTAAGAAGGGACAAAGG
TGATGCGGTGCAAAAACAATGCAAGGACGGTCCCCCGTTGCTAAGTTTCAGAGGCCTCTGTTATCCCGTGTGTGCGTGCA
TATGAAAGAGAGGCAGAGCCACCTGTTGGTGGTCACCTCAGTCCCCACTGCGCCCCTCTCTACAGTCTAGACCATCGTCT
GCATGGTATGGCACAGGGATATGCA--------TACATATGCTAGACAACAGCGGAGCCACAAGGCAACACACACATACG
CACAAGAGCTCTTGCAGTATTGCACCCGTCTGCCATCTATATAGCCTCTAGCATTTGCTCCCTTAAGCTGTTTCTCTAAT
TCCAAGCATACTA-----CCATCCTCCCGTTCCCTATCCATCTTCTCATTTTGGGGCAGGGGGGTTATGGCCAGTGGTAT
CCCCACAATAACCTCGAGCTCCCTGCTCCTCTTCTTCCTCCTCTCTTGCTTGCTCATCGGCCATGCTCTCTGCAACCAAG
GCCACCATGGCAGCATCTCAGGTTTCACCTCTTCACTACAAATACTGAGTGTTCTTTGTTTGTTCTTGCATGAGAATGGC
TTGTTTTCTTTTTCTTTCTTTAGTGTGCATATGTTCACTGTGTATTCACTAGTTTCACTTCAATATGCTGTACAGGTGCA
GACTATGGAGAACAATATGCTCACCAGGGATTACCTGAAGAACATATAGACCTGCAAGAGAACATCAAGGTACATATGCC
ATCTAGTTAGTACTAAGTGCCATTCTTATAGGTACTATATTTTCTAATGTTTTCAGCACATGATAAATTATGCTTGAATA
GAGATTCTGTAAACTTCAACTTGCTTGAAATACTATATACCTGTCCATGGAGTTTTTGGTAAGCGGACTCATAGGAAGAG
GATACAGTAGCCAACTTGCC---TCCTTACTCCTACAGTTAGTACGAGAAATTCTAAGACCAAGAGCAAAAC-AGCATGG
GTGCAGCCGTGCAGGATATGCAAGTTAATTTGGAAAATGGGGCCCATGACATAGCCATCTGAAAGCAACAATAACTAACA
TGACGTTCACATGCTTCACAGCAGGGTCTAAACAAGGAGAAACCGCCCAAGTATGCAAGGAGAATGCTGATTGGTTCAAT
TGCTCCCATATGCACGTACAACGAATGCAGGGGGTGTCGATCCAAGTGTACCGCTGAGCAAGTTCCGGTGGATGCAAATG
ACCCCATGAATAGTGCCTATCATTACAAGTGTGTCTGCCACAGGTGATCATTGATGGTTAGTAGGAGCTTCTATGATATG
ATATGTCTAGTAGAGAGTAGTAGTTTTCCTTCAGTCTCCTCTTCTTTTCCTTCTATTCTCTTTCTCTGTTAAAAAGGCTT
CTTCTTTTTT-CCTTTTTCTTTTTTACTAGAGGTTAACTAGTAGCAGACTGGAGGGGCATTTTGTACTGTAAGATGTCTA
GTTCAGCTTGTGAACTAGTAATTTTGAGAGTGAATGGTCTGAAATTTTGATATCGGAAGACCAGCTTGGCTGTGCAGATA
ACCAGTTTCTTTGTTAATACTCCCTCCGTCCCAAAATAAGTGTCGCTGGTTTAGTACAAAGTTAGTAAAGCTTTGTACTA
AATCAGCGACACTTACTTTGAGACGGAGGGAGTATATTGCAACTAGAAATCAAATCTATAAGCAGACCTCGATGTGGTCT
TCTGCTTGTATAGGCTTAGAACTTCAGGCTGGATCTTCTGCACTGTTGGTCTCCAACTGTGCAGTGTATAAATGCTGTAA
ACGTTCGTATGTTCCACCAGAAGTTGACAGTATCTTCTCTA-------CCCCGAGCATCTTCAGCTCTCGTGGG-TTTTG
TGCCATCCCTCTTTCCATGTAACAACGTATACTGCAACAACCACCGGTGCTGTACAAGGGAGCAGTAGATTCATATTGAC
AAATCAGAGAAGAAAGAAGATGGTGACTTCTGTGCAGACTGCATTTCCTCAGCAGAGCAGGCTTCAGCTGTTGAATTTAA
CCAACCAGGTCTAGTTTCATGTATGTACCACA-TTTTTACGCAAAAAGCTGTAGCATAGGTAATAAACAATCCAGTACCA
AACAGAGCATTTATTTTGCAAGCAGAGAGGCTGCAGGGTGCCTTGTATGCATTCAACAAAAGAACAGTTGAAGATTTGTC
TCAATAGGAAATATTTATTACCAATAGCTCTTTTACTGGAG--GGGTAAGGATGCTTATATACAACGGGACACTCTGGAG
TAACTCATGTATATTTGAACGA
>SNPs
---------------S------S-SSSSSSSS-------------------------S----------------------
--------------------------------S--------------------------SSS------------------
-----------------------SS-----S------------------------------------SSS-SSSSS--S-
------S------S-------S---S-SSSSS------------------S-----------------SSSS--------
---------S----------------------------------------------------------------------
------------------------------------------------------------------------S-------
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--S-----------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------S----------------------------------------------------------------
--------------------------------S------------------S-----S-S---------------S----
-----------------------------------------------------------------------S--------
----------------------------------------------S---------------------------------
-------S--------------------------------------S---------------------S----S------
-----------------------------------S---------S------------------S---------S-----
--S----------SS-SS-SSSS-----S----------------------S----------------------------
----S-------------------------S---------------------S---------------------------
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---------------------------------------------------S----------------------------
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-----------S---------------------------S----------------------------------------
----------S---------------------------------------------------------------------
----------------------------------------------------------S---------------------
-----------S------S------------------------S------------------------------------
------------------SS------------------------------------------------S-------S---
------------------------------S---------S---------------------------------------
-----------------------------------------SSSSSSS--------------------------S-----
----------------------------S---------------------------------------------------
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--------------------------------S-----------------S-----------------------------
-------------------------------S------------------------------------------------
S--------------------------------SSSS-------------------------------------------
----------------------
>forward_141
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-----------------------------------------ATCCAAGCATCTTCACCCCG-------------------
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>reverse_1537
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----------------GCCTCCTTCCTTGCTCCTAC--------------------------------------------
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>forward_235
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-------------------------------------------------------ATGATACGCCATGCCTGTGT-----
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>reverse_2172
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-----------CGTTAATGCTCCCTCCGTCC-------------------------------------------------
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