>input_sequence_67100
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-----------------------------------------------------------ATGGACGCGTTGCTTAGGCGG
CAGCAGGAGCTCGTGATTCAGCTCCGAGCGCTCGTCCTTCCGGCGCTTCGAGACGCCGACAGCAGGTCAGCCGACCTCGC
CGTTGACCTCTTCGATGACATGATCGACTGCATCACCGGCGTTATCTCTAGGCTCCAGAGCATCACTACTGCAGGCGGTG
AACCAGCGGTGGCCTTCATCCTCGGCAACAATATCTCCAACGGCGCCGACGAGGGACAAGAGAAGAAGCCCGTGATCAGC
AACGCTGGTCAGAAGAGAAGGTTCTTGATTTCCCAACAAGACTCT-----------------------------------
---AGTCTCAATTAATTGG-TTTTGCGACATGATTTAGCTGGATTTCAAATTGCATCG--------TCACTAATACGTAC
TCCCTCCGTTCCAAAATAGATGACCCAACTTTATACTAGCTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGA
GTACATACTATCACGTACTATCACCTCTATTCCGAATTATAATAG-TTTTAGATATTTTCATATGGACTACATACATATT
GAAATAAACGAATAAACACAATAAAACCCGTCTACATACATCAGATTTAGAAAAAAGTCAGAACATCTTATAATTCGGAG
CGTGAGGGAGTACGTAGTAGCGCTGCCTTTCTTCGATATATTGGTACTCTTTCATGTATCTCGCTAATTAATTT----TT
TGCTACTAATATATATGTATGCATGCTATGTAGGAGGAACAACGAAAAGCGATCAAGATCACTTGTGACAATTGTTCCAC
ATTATGATGGCCGTCATTGGAGAAAATATGGGCAGAAGAACATCAAAGGGAGGCAACATGCTAGGTATCTATACTTCTCC
TAA-----------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G021400
CCTTCACTGCGCCGCCCGTGAGGCATCAGTGGCGCAGGCTGACCGGCGCGGCAGCGCGGCAACTTTGGCATTGATTCGCC
GCGGGAAACGAGGCAATGAGGACGACGAAGGGCCGAGAAGAGAGCCGTGTCGCTGACGCGGCGGGCCCGCTGCTTTTTCG
CGCCAAAAAAGTTCGCCCGGCGCCCGCGGGCGCCCCCAGCGCGCCGGGTTCGGCCTGGGTCCGCCAGCGCTGTTTTCGGC
CCAGGCCGGCGAAAATCAGGCTCCTGGGGCGCAACTGGGGCGATTTTTCGGCGCCGGCGCAAAAAAAACGCCTGGGAAGG
CCTTCCTGGGGGCGCGGCTGGAGATGCCCTTAGCACCTTTCCAAAGTGAGGCCTTATAAAAACGGACATGTTTTGATGCC
GCGAGGCCTTATAAAAATGGACATGCTTGTGATACTGTGAGGGTTAATAAATCCGGACGGAGAGAGTATGCACTTATTGG
TTTTGATCAACTTGTTTGCATAGTTAATTGAGCAGTTTGAGACATTGAGTGCGTTGTTCCTTCATCACATGGCTGGCCTA
TCGTCACCCTCCCAGTCAACATGCATGCACGCGTACAAATTCCTGGTACGACCGTACGGTGCTTCATGCATGGATGGGTG
GATGCATTGCATGAACGAATAATTGCATGAATGGCAAGGTAGTCTTGATTTGTTGTTTCCCTTTTGAGCAGTGAGACAGA
GCGAGCACGAGGAGGAGCGGCACGTCGTCGGTTAGTCAGCTGAGACTTTTGACC-GGGCGGGGTTGTTGAGCCTCATATA
TC-----------TATGCACCCATCTCCACTGTACAAAGCCCCTGTAAAGTTGGACAAATTAGTAG-AGGCAACATA---
---TATAAGGTTGGTGCGTGCATCTTAACTCTACAGTCTACTATAAATCAGATTCCGTGCACCAGCAGATTGCATATTCA
TGGATAGCAATATGAGGAGCAGCAGCAGCAGCATGATGGTCGTCCATGGCGGCTCGGAGATGGACGCGTTGCTTAGGCGG
CAGCAGGAGCTCGTGATTCAGCTCCGAGCGCTCGTCCTTCCGGCGCTTCGAGACGCCGACAGCAGGTCAGCCGACCTCGC
CGTTGACCTCTTCGATGACATGATCGACTGCATCACCGGCGTTATCTCTAGGCTCCAGAGCATCACTACTGCAGGCGGTG
AACCAGCGGTGGCCTTCATCCTCGGCAACAATATCTCCAACGGCGCCGACGAGGGACAAGAGAAGAAGCCCGTGATCAGC
AACGCTGGTCAGAAGAGAAGGTTCTTGATTTCCCAACAAGACTCT-----------------------------------
---AGTCTCAATTAATTGG-TTTTGCGACATGATTTAGCTGGATTTCAAATTGCATCG--------TCACTAATACGTAC
TCCCTCCGTTCCAAAATAGATGACCCAACTTTATACTAGCTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGA
GTACATACTATCACGTACTATCACCTCTATTCCGAATTATAATAG-TTTTAGATATTTTCATATGGACTACATACATATT
GAAATAAACGAATAAACACAATAAAACCCGTCTACATACATCAGATTTAGAAAAAAGTCAGAACATCTTATAATTCGGAG
CGTGAGGGAGTACGTAGTAGCGCTGCCTTTCTTCGATATATTGGTACTCTTTCATGTATCTCGCTAATTAATTT----TT
TGCTACTAATATATATGTATGCATGCTATGTAGGAGGAACAACGAAAAGCGATCAAGATCACTTGTGACAATTGTTCCAC
ATTATGATGGCCGTCATTGGAGAAAATATGGGCAGAAGAACATCAAAGGGAGGCAACATGCTAGGTATCTATACTTCTCC
TAAACAGTTCATTCAAGCATATATATCGTCACATTACTACTACG----------------------------------TC
AACCTATATATCTACTGCCCTTATCTGAGATGAGTGAAACTTATCGGTTCTGCTATGAAAAATACATTTGAGGGTATCGC
CAGGGATATATATGTCGTCGAACATCGGAGATGTATTATGACCCAGGGTAATGCCATAATCGTGCATAATTCTGAGGGGA
AGGGGAGCCGTTATGATTAGCTACACTACTCCAACAGGCCTAGTACACAGCCCCAGGGGCGGAGCTAGCGAATTGCTAAA
GCCTGGGCACACCATAAGCGAAATTTTACTTTGGTCTATCAAACACCACAAGTATCATATATTTGGATAAACGCCATGTG
CAATATATGCACCAATATTTCATAGTAGATAGTAGAATAAATAAAAACATGGGATACAATACCAATTAAATGGCTAATTG
AGAAGATATTATAGGTAAATTTAAAAATTTGCCGATATATCATAGGGGCACTCACTATCCATGGCCTTAGGATCCAGCGA
ATCCCCTGATGAGGATCGCTGGGAGCTGTCATGGGCCGAACTGCAGCATGTGATTCAATGCATCAGAATTACGAAATAAG
GGAGTCGGGCATATAAGTTCGTCAGAGCCTTCGAATACTTACGATCCCGCTGGGGGCTTCTCCCTGAGGCGCCACTACGA
GCTGCTGTCGGTGTCCGGTGCGGTGTCGTCCGCGAGGGAGGCTCTCCCCCTCTTGGACGCTTCGGCCTCTAGACACATGG
AGGCCTCCCTTTTTTTCCTTCCCCTTGTAGGGGGGGGGGGGGAGTAGCTTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCGTCGGTGGCGAGTGAGGACCGGGTCTTGGCGTCTTCGGACGTCACGTCCAAAATGCCCTTGTGACGGAGGCCACC
TCTGGCCCCCTTGGCCTTCTTCTTGGCCTTCTTCTCCGGCGCCCTACCAGGCGCCGGAACCAGCATCTTCGTCAGAA
>chr2A_727
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------ACGAGGAGGAGCGGCACGTCGTCGGTCAGTCAGCTGAGACTTTTGACCAGGCCGGGGTTGTTGCGCCTCGATCC
ATCAAATATATCATATGCACCCATCTCCCCTGTGCAGAGCCCCTGTAAAGTTGGACAAATTAGTAGGAGGCAACATAGTA
CTATATAAGGTTGGTGCGTGCAGCTTAACTCTACAGTCTACTATACATTAGATTCCGCGCACGAGCTGATTGCATATGCA
TGGATAACAAGATGACG------AGCAGCAGCATGATGGTCGTCCATGGCGGCTCGGAGATGGACTCGTTGCTTAGGCGG
CAGCAGGAGCTCGTGATTCAGCTCCGAGCGCTCATTCTTCCTGCGCTTCG------CGACAGCAGGTCAGCCGGCCTCGC
CGTCGACCTCTTTGATGGCGTGATTGACTGCATCAATGGCGTCATCTCCAGGCTCCAGAGTATCACCGCCGCAGGCGGTG
AATCGGCGGCGGCCTTCGTCCTCGGCGACGTTATCTCCAACGGCGCCGGCGAGGGACAAGAGGAGAAGCCCGTGATCAGC
AACGCTGGTCAGAAGAGAAGGTTCTTGATTTGCCAATAAGACTCTTGATTATATCATTTCAAAAAGACCCTTGATTATAT
TCTAGTCTCAATTCATTTGTTTTTGCGACATGATTTAGCTGGATTTCAAATTGCATCATCAGTTCATCACTAACACGTAA
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-TACATACTATTACCAATG-----------TCCGAATTATAAGGCTTTTTGTATATTTTAATATGAACTACATACTGACT
GAAATGAGCGAATAAACACAGAAAAACATGTCTACATACACTGATTCGTGGAAAAAGTTATAACATCTTATAATTCGGAA
TGTGAGGGAGTACGTTGTAGCACTGCCATTCTTTGATATATTGGTACTCTTTCATATATCTCGCTAATTAATTAATTATT
TGCCACTAATATATATGTATGCATGCTATGTAGGAGGAACAACGAAAAGCGATCAAGATCACTTGTAACGATTGTTCCAC
ATTATGATGGCCATCATTGGAGAAAATATGGCCAGAAGAAAATCAACGGGAGGCAACATGCTAGGTATCCATACTACTAC
CAAACAG-TCATTCAAGCATATATATCGTCACATTACTACTACATCAACCTACATTTCCTTTTTCTTTTGAGGCCACATC
AACCTACATTTCTGCTTCCCTTATCTGAGATGAGTGAGACTTATCGGTTCAGTTATGAAAAATACATTGGGGGCATA---
----------------------------------------------------------------CATAGTTTTGAGGGGA
ACGGGAGCTGTTGCGAGTAGCTACCCTACTCCAACAGGCCTAGTACACAGCCC---------------------------
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>chrUn_1153
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---------------------------------------------------GCTCCAGAGTATCACCGCCGCAGGCGGTG
AATCGGCGGCGGCCTTCGTCCTCGGCGACGTTATCTCCAGCGGCGCCGGCGAGGGACAAGAGGAGAAGCCCGTGATCAGC
AACGCTGGTCAGAAGAGAAGGTTCTTGATTTGCCAATAAGACTCTTGATTATATCATTTCAAAAAGACCCTTGATTATAT
TCTAGTCTCAATTCATTTGTTTTTGCGACATGATTTAGCTGGATTTCAAATTGCATCATCAGTTCATCACTAACACGTAA
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-TACATACTATTACCAATG-----------TCCGAATTATAAGGCTTTTTGTATATTTTAATATGAACTACATACTGACT
GAAATGAGCGAATAAACACAGAAAAACATGTCTACATACACTGATTCGTGGAAAAAGTTATAACATCTTATAATTCGGAA
TGTGAGGGAGTACGTTGTAGCACTGCCATTCTTTGATATATTGGTACTCTTTCATATATCTCGCTAATTAATTAATTATT
TGCCACTAATATATATGTATGCATGCTATGTAGGAGGAACAACGAAAAGCGATCAAGATCACTTGTAACGATTGTTCCAC
ATTATGATGGCCATCATTGGAGAAAATATGGCCAGAAGAAAATCAACGGGAGGCAACATGCTAGGTATCCATACTACTAC
CAAACAG-TCATTCAAGCATATATATCGTCACATTACTACTACATCAACCTACATTTCCTTTTTCTTTTGAGGCCACATC
AACCTACATTTCTGCTTCCCTTATCTGAGATGAGTGAGACTTATCGGTTCAGTTATGAAAAATACATTGGGGGCATA---
----------------------------------------------------------------CATAGTTTTGAGGGGA
ACGGGAGCTGTTGCGAGTAGCTACCCTACTCCAACAGGCCTAGTACACAGCCC---------------------------
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>chr2A_1222
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----------------------------------------CGGCGCCGGCGAGGGACAAGAGGAGAAGCCCGTGATCAGC
AACGCTGGTCAGAAGAGAAGGTTCTTGATTTGCCAATAAGACTCTTGATTATATCATTTCAAAAAGACCCTTGATTATAT
TCTAGTCTCAATTCATTTGTTTTTGCGACATGATTTAGCTGGATTTCAAATTGCATCATCAGTTCATCACTAACACGTAA
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-TACATACTATTACCAATG-----------TCCGAATTATAAGGCTTTTTGTATATTTTAATATGAACTACATACTGACT
GAAATGAGCGAATAAACACAGAAAAACATGTCTACATACACTGATTCGTGGAAAAAGTTATAACATCTTATAATTCGGAA
TGTGAGGGAGTACGTTGTAGCACTGCCATTCTTTGATATATTGGTACTCTTTCATATATCTCGCTAATTAATTAATTATT
TGCCACTAATATATATGTATGCATGCTATGTAGGAGGAACAACGAAAAGCGATCAAGATCACTTGTAACGATTGTTCCAC
ATTATGATGGCCATCATTGGAGAAAATATGGCCAGAAGAAAATCAACGGGAGGCAACATGCTAGGTATCCATACTACTAC
CAAACAG-TCATTCAAGCATATATATCGTCACATTACTACTACATCAACCTACATTTCCTTTTTCTTTTGAGGCCACATC
AACCTACATTTCTGCTTCCCTTATCTGAGATGAGTGAGACTTATCGGTTCAGTTATGAAAAATACATTGGGGGCATA---
----------------------------------------------------------------CATAGTTTTGAGGGGA
ACGGGAGCTGTTGCGAGTAGCTACCCTACTCCAACAGGCCTAGTACACAGCCC---------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------S------------------------S-----------S-----SSSSS
SS--------------------------S----S--S-------------------------------------------
----------------------S----------------------S--S--------S----S---S----------S--
------S---S----S-SSSSSS------------------------------------------S--------------
---------------------------------S-S-----S--------SSSSSS-----------------S------
---S--------S----S-S----S----------SS-----S-----S-----------S-----SS-S----------
--S-S----S-------S--------S--SS-----------------S-------------S-----------------
-------------------------------S----S-------------------------------------------
-------------S---S---------------------------------------S---------------S-----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----------S--SS-SSSSSSSSSSSSS------------SSS-----SS-------S-----S---------SS-S-
-----S-S------------SS-----SS-----------SSSSS-SSS-S-------S-S------------------S
S--------------S-----S-----S-----S---------------------S-----------------S------
---S--------------------------------------------------------------S--S----------
------------S------------------S--------S-----S----------------------S-----S--S-
S------S-----------------------------------S------------------------------------
------S--S---S--S--------------------S------------S-S---------------S-S--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S--------
-S------S---SS--S-------S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_473
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-----------------------------------------------------CGGACGGAGAGAGTATGCAC-------
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>reverse_2228
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-------------------------------------------------------------------GCGAATTGCTAAA
GCCTGGG-------------------------------------------------------------------------
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