>input_sequence_67078
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-------------------ATGGCTTCAGGCTTGCAGGTGTTTGGCCAGCCAGCATCCACCGATGTTGCCAGGGTTCTGA
CATGCCTCTTTGAGAAGAATTTGGAGTTTGATCTCGTCCGCATCGACACATTCAAGAGACAGCACAAGCTTCCTGAGTTT
GTCAGGCTGCGGGTAGGATGCTTCGATCACTTCTTATTCAGTTTCAAAAAATCTTGAATTAGGTAAAGCATGTACTAATT
TTTCCATTCATCTTTTTGCAGGATCCAAGTGGACAAGTGACATTCAAGCATGGCGACAAGACTCTTGTCGGTAAGGAGAA
CATGAACACAGTTA----TTATCACGTTACATTTCTGGATTCAGTTTTCTTTCAAGGACTGAAAGGCAATGTGAACCTTC
TGTGCAGATCCAAGGGCTATTTGCCGGTACCTCTGTACCCAGTTCCCAAACCAGGGAAACAGGAACCTCTATGGAACAGG
TTCTCTGGAGCGGGCATCAATAGAACAGTGGCTGCAAGCAGAGGCTCAGAGCTTCAACCCTCCCAGCTCGGCCCTCGTGT
TTCAGCTGGCATTTGCTCCTCTTCTGGAAATTCCTCAGGACCACATGGCCATTGCAGAGAATGAGAGGAAGCTTCAGCAA
GTCCTCAACGTTTACGACGAAATACTCTCCAAGAATGAGTACCTGGCTGGCGATGAGTTCACCCTGGCCGACCTCTCCCA
CCTTCCGGACTCGCAGTACATCGTGAGTTCAGAGAGAGGGAGGAAGCTCTTCACCTCCAGGAGGAATGTGGCGAGGTGGT
TCGACAAAATCTCGAGGCGCAAGGCCTGGGAGCAGGTTGTCAAGATGCAGATGGAGCATCCTGGGGCCTTTGAGTAA---
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>chr5A_1_TraesCS5A01G502400
TAGTA---------------------------------------------------------------------------
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---------------------------------------------------------TTGCTGGCTGAAGTGCAAGCTAA
ATGCTCAGGATGACATGCTGATTATCACTTGGGTTAATGCATTTTGGCAGTTTCTTATTTTGCCTCTTCATAGTAATCT-
----------------------------------------------------------------------------AGTA
ATAT---GTAAAACTTAAGCAACTGAATTCAGCTTGTCAATTTACAGGCACTACTCCTGATAAATGAGTTCTGTTCTTCT
ACCAAATAGAACATACTGGGATCGAAATCTATGTGTGTGCATGGATTTCAATCCCAGTATGTTTTTTCTTCCATCAGACC
AACGGTTGAATTATATACCTGACCCCATACGGGAGACATTACTTTATGTCGAAAATTTTATTCTTGTACCCTAGCAGAAG
CCATCAAATCTTCATCACAGCTGGTACTTGATGCCAATCTTCTTACTTATCCTAGCCAAATTCTATCTATCAATTGTCCC
AAACCATCCATGCCAACATCATGAGCTCCTCATATGCTAAAAATTT--TCTCAGTCAAGTTATGAAAGACTGGATTA-TA
AACATATACCTGACTAGTGACTCCATACGGTGGACGTTGCTTTTATCGAAAAAATTATTCTTGCACTCTGACAGAAATCA
TCAG-TCTTCGTTAGTGTTGGTACTTCGATGCCAATCTTCTTACTTATCCAAGCCAAATTCTCTCTGCCAATTGTCCCAA
ACCATCCATGCAACATCA-GAGCTCCTCATATACTGTTTTGAGCTTTCTCAGTCAA-TAATCAAAGACTGGATTGTAAAT
AAATAATGCTATATATTTTGCTGGGCTTGTTTGCTACAACAGACATTATGATTGCTGCAAGCAAGAATCCAGAACCACAC
TTTCTCTTTACACTTTCC-CTTTCCAATTGTAAAATATTGTGCTAGGTAGCAAGGGCAAGGCAAGTATGGAATTCCACCT
TTTCTTTTCTTCAAATACCTTGCATTGAAACCTGCTGTCACCATTCCTCATTGCCATTGCATAGCCTGACAAAGAGATCA
ATCAAGCCAAAGAGAAAGGATGGCTTCAGGCTTGCAGGTGTTTGGCCAGCCAGCATCCACCGATGTTGCCAGGGTTCTGA
CATGCCTCTTTGAGAAGAATTTGGAGTTTGATCTCGTCCGCATCGACACATTCAAGAGACAGCACAAGCTTCCTGAGTTT
GTCAGGCTGCGGGTAGGATGCTTCGATCACTTCTTATTCAGTTTCAAAAAATCTTGAATTAGGTAAAGCATGTACTAATT
TTTCCATTCATCTTTTTGCAGGATCCAAGTGGACAAGTGACATTCAAGCATGGCGACAAGACTCTTGTCGGTAAGGAGAA
CATGAACACAGTTA----TTATCACGTTACATTTCTGGATTCAGTTTTCTTTCAAGGACTGAAAGGCAATGTGAACCTTC
TGTGCAGATCCAAGGGCTATTTGCCGGTACCTCTGTACCCAGTTCCCAAACCAGGGAAACAGGAACCTCTATGGAACAGG
TTCTCTGGAGCGGGCATCAATAGAACAGTGGCTGCAAGCAGAGGCTCAGAGCTTCAACCCTCCCAGCTCGGCCCTCGTGT
TTCAGCTGGCATTTGCTCCTCTTCTGGAAATTCCTCAGGACCACATGGCCATTGCAGAGAATGAGAGGAAGCTTCAGCAA
GTCCTCAACGTTTACGACGAAATACTCTCCAAGAATGAGTACCTGGCTGGCGATGAGTTCACCCTGGCCGACCTCTCCCA
CCTTCCGGACTCGCAGTACATCGTGAGTTCAGAGAGAGGGAGGAAGCTCTTCACCTCCAGGAGGAATGTGGCGAGGTGGT
TCGACAAAATCTCGAGGCGCAAGGCCTGGGAGCAGGTTGTCAAGATGCAGATGGAGCATCCTGGGGCCTTTGAGTAACG-
-------CCTTGGTGGTTGCAAGCAAGTATTTTGAGTTCATCTTGAAGAGCTCTCTCTGTTTATCGATCGTACTGTCATG
TGTTCTTTCATCATTGTTGCTACTTGTGTTGTCGTCATTTACTGAATCCTCACCGACG-TTGTCTTGTGAACCAGAATAA
TATGAGGCCTGTTTGTGATGTGTTATGTACATTGCGCCGTTTAAAATGCTTTTGCCCTGGTGTGTACTCTACTGTCTTTT
TTTCACATGTACCATTTTATTAACAGAAAGAAACTTGATTTTTTTTCAGGTGTATATTTCACTAATTTCATTTCCAGTTA
GTTCTTGTTTGCAAATGTTGTTGTATTTACATGTTCTATGAGCTTGCATTCTGGTTGCATATTTCGTGCGTAACGGCTGA
TATTGTGAAACATAATACACGAGGGGATCTC-ATCAATTTGAGCCGCATTTGCTCGAAAGTCAAGATGCCTAGTCAAAAG
CCCAACTTAATATTTCTTGACTTTCGACCAACATACCTATTTGATTGTTTTCTCTCAGAAGCTTGGGAACGCTAAAACTT
CCCACATTTTTTTTTGAACCAAAAACCGTAGAACAATCGTTCTACGGTAAATTTCATTCAAAAGAAAGCAAAGTTATGTA
CAACAAAGAAAATAAAATACAGACTCCACCATCTAACCAACACCAACTCTAGGAAAATCCATGATAAATTAAGTTAGATT
ATCTGTAATCCATCCTCTGAAAGCATCTCTGTCTTTTTCTTTGGTTCTGAAGAGTAACAACTTGAGATCATCTCTGAGAA
GATTTCTCCATGCTAGAACTGATGGGTTGAGCTTTGAAAATTTTGGAGTTTCTCTGCATCCAAATGTGCCAGCAACCCAT
GGTGATGATGCTCATTGCGACCTGCTTGGGTAACTGGCTTAATAACAAGTTAATTTCATCGAAAACATTGATGCCTCTGA
ATTTAGAAGGGACAATTGAATCCCAGCATTGAAGAGCAAAAGGGCAG
>chr4D_1
TGCTCAAAATGAGATGCTGATTTATCACTTGGGTTAATGCATTTTGGCAGCTTCTTATTTTGCCTCTTCACACTATTATA
AGTAATATAATATGTAAAACTTAAGCAAATGAATTCATCTTGTCATTTTACAGGCACTACTCCTGATAAATCAGTTATGT
TCTACCAAATGAAACATACTGGGATTGAAAGCTAAGCACATTCAAAGATTCCCTTTTATTTTCCTTCCATCAGCTGAACG
GTTCAAATATACCTGCCTCCATATGGGGGATGTTGCTTTTGTCGAAAAATATATTCTTGCACTCTGACAGAAGTCATCAG
ATCTTCGTTACTTCTGGTACTTGATGCCAACCTTCTACTTATCCATGCCTGATAGTATTACTGGCTGATGTGCAAGCTAA
ACGCTCAGGATGACGTGCTGATTATCACCTGGGTTAATGCATTCTGGCAGTTTCTTATTTTGCCTCTTCATAGTATTCTA
CTCCCTCCGTCCCAT-------AATATAAGAACGTTTTTTACACTAGTGTAGTGTCAAATATTATGGGACAGAGGGAGTA
ATAT---GTAAAACTTAAGCAACTGAATTCAGCTTGCCATTTTACAGGCACTACTCCTGATAAATCAGTTCTGTTCTTCT
ACCATATAGAACATATTGGGGATG------------------------CAATCCCAGTATGTTTTTCCTTCCATCAGACC
AACGGTTGAAT--TATACCTGACTCCATATGGGAGACATTACTTTATGTCGAAATTTTTATTCTTGTACCCTGACAGAAG
CCATCAGAT--TCATCACAGCTGGTACTTGATGCCAATCTTCTTACTTATCCTAGCCAAATTCTATCTATCAATTGTCCA
AAACCATCCATG-CAACATCATGAGCTCCTCACATACTGTTTTTTTTCTCTCAGTCAAGTTATCAAAGACTGGATTA-TA
AACATATACCTGACTAGTGACTCCATACGGTGGACGTTTCTTTTATCGAAATAATTATTCTTGTACTCTGACAGAAATCA
TCAGATCTTCGTTACTGCTGGTACTT-GATGCCAGTCTTCTCACTTATCCAAGCCAAATTCTCTCCATCAATTATCCCAA
ACCATCCATACAACATCACGAGCTCCTCATATATTGCTTT-----TTCTCAGTCAAGTAATCAAAGACTGGATTGTACAT
AAACGATGCTATATATTTTGCAGGGCTTGTTTGCTACAACAGACACTATGATTGCTGCAAGCAAGAATCCAGAACCACAC
TTTCTCTTTACACTTTCC-CTTTCCAATTGTAAAATATTGTGCTAGGTAGCAAGAGCAAGGCAAGTATGGAATTCCACCT
TTTCTTT-CTTCAAATACCTTGCATTGAAACATGCTGTCACCATTGCTCATTGCCATTGCATAGCCTGACAAAGAGATCA
ATCAAGCCAAAGAGAAAGGATGGCTTCAGGCTTGCAAGTGTTTGGCCAGCCAGCATCCACCGATGTTGCCAGGGTTCTGA
CATGCCTCTTTGAGAAGAATTTGGAGTTTGATCTCGTCCGCATCGACACATTCAAGAGGCAGCACAAGCTTCCTGAGTTC
ATCAGGCTGCGCGTAGGAGGCTTCGATCACTTTTTATTCAGTTTCAAAAAATCTTGAATTAGTTAAAGCATGTACTAATT
TTTCCATTCATCCTTTTGCAGGATCCAAGTGGACAAGTGACATTCAAGCATGGTGACAAGACTCTTGTCGGTAAGGAGAA
CATTAACAGTC---------ATCACATTACATTTCTGGATTCACATTG-TTTAAAGGGCTGAAATGCAACGTGAACCTTC
TGTGCAGACCCAAGGGCTATTTGCCGGTACCTCTGTACCCAGTTCCCAAACCAGGGAAACAGGAACCTCTATGGGACTGG
CTCTCTGGAACGGGCATCAATAGAACAGTGGCTGCAAGCAGAGGCTCAGAGCTTCAACCCTCCCAGCTCGGCCCTCGTGT
TTCAGCTGGCATTTGCTCCTCTTCTGGAAATCCCTCAGGACCACATGGTCATTGCAGAGAATGAGAGGAAGCTTCAGCAA
GTCCTCAATGTTTACGACGAAATACTCTCGAAGAATGAGTACCTGGCTGGCGACGAGTTCACCCTGGCTGACCTCTCTCA
TCTTCCGGACTCGCAGTACCTTGTGAGCTCGGAGAGGGGGATGAAGCTCTTCACCTCCAGGAAGAATGTGGCGAGGTGGT
TTGACCAAATCTCGAGCCGCAAGGCGTGGGAGCAGGTTGTCAAGATGCAGATGGAGCATCCTGGTGCCTTTGAGTAACG-
-------CCTTGGTGGTGGCAAGCAAGTATTTTGAGTTCATCTTGAAGAGCTCTCTACGTTTATCGATCTTACTTTCATG
TGTTCTTTGGTCATCATTGCTACTTGTGCTGTCGTCGTTTACCGAATCCTCATCCACG-TTTTCTTGTGAACCAGAATAA
TATGAGCC------GTGATGTGTTATGTACATTGCGCTGTTTAAAATGCTTTTGCCCTG---------------------
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>chr4B_1
TAGTA---------------------------------------------------------------------------
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---------------------------------------------------------CTGCTGGCTGAAGTG--AGCTAA
ATGCTCAGGATGACATGCTGATTATCACTTCGGTCAATGCATTTTAGCAGTTTCTTATTTTGCCTCTTCATACTAATCTA
ATATGTATTCCCTCCATAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTTATCTAAACGCTCTTATATTTGTTTAC
AGAGGAAGTAAAACTTAAGCAACTGAATTCAGCTTGTCATTTTATAGGCACTACTCCTAATAAATCAGTTATGTTCTTCT
ACCAAATAGAACATACTGGGATCAAAATTTATGTGTGTGCATAGATTTCAATCCCAGTATGTTTTTTCTTCCATCAGACC
AACGGTTGAAT--TATACCTGACTCCATATGGGAGACATTACTTTATGTCGAAAATTTTATTCTTGTACCCTGACAGAAG
CCATCAGATCCTCATCACAGCTGGTACTTGATGCCAATCTTCTTACTTATCCTAGCCAAATTCTATCTATCAGTTGTCCC
AAACCATCCATGT-AACATCATGAGCTCATCATATACTGTTTTTCT--TCTCAGTCAAGTTATCAATGACTGGATTATTA
AACATATACCTGACTAGTGACTCCATACGGTGGACGTTGCTTTTATCGAAAAAATTATTCTTGCACTCTGACAGAAATC-
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>chr4B_798
TGCAG---------------------------------------------------------------------------
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------------------------------------------------------------GCAAGAATCCAGAACCACAC
TTTCTCTTTACACTTTCCTCTTTCCAATTGTAAAATATTGTGCTAGGTAGCAAGAGCAAGGCAAGTATGGAATTCCACCT
TTTCTTT-CTTTAAATGCCTTGTATTGAAACCTGCTGTCACCATTGCTCATTGCCATTGCATAGCCTGACAAAGAGATCA
ATCAAGCCAAAGAGAAAGGATGGCTTCAGGCTTGCAGGTGTTTGGCCAGCCAGCATCCACCGATGTTGCCAGGGTTCTGA
CATGCCTCTTTGAGAAGAATTTGGAGTTTGATCTCGTCCGCATCGACACATTCAAGAGGCAGCACAAGCTTCCCGAGTTC
ATCAGGCTGCGGGTAGGATGCTTCGATCACTTCTTATTCAGTTTCAAAAAATCTTGAATTAGGTAAAGCATGTACTAATT
TTTCCATTCATCCTTTTGCAGGATCCAAGTGGACAAGTGACATTCAAGCATGGTGACAAGACTCTTGTCGGTAAGGAGAG
CATGAACACAGTTATCACTTATCACGTTACATTTCTGGATTCACTTTTCTTTTGAGGACTGAAAGGCAACGTGAACCTTC
TGTGCAGATCCAAGGGCTATTTGCCGGTACCTCTGTACCCAGTTCCCAAACCAGGGAAACAGGAACCTCTATGGGACTGG
CTCTCTGGAACGGGCATCAATAGAACAGTGGCTGCAGGCAGAGGCTCAGAGCTTCAACCCTCCCAGCTCGGCCCTCGTGT
TTCAGCTGGCATTTGCTCCTCTTCTGGGAATCCCTCAGGACCACATGGCCATTGCAGAGAATGAGAGGAAGCTTCAGCAA
GTCCTCAATGTTTACGATGAAATACTCTCGAAGAATGAGTACCTAGCTGGCGATGAGTTCACCCTGGCTGACCTCTCCCA
CCTCCCGGACTCGCAGTACATTGTGAGCTCGGAGAGGGGGAGGAAGCTCTTCACCTCCAGGAGGAATGTGGCGAGGTGGT
TCGACCAAATCTCGAGGCGCAAGGCGTGGGAGCAGGTTGTCAAGATGCAGATGGAGCATCCTGGCGCGTTCGAGTAGCGG
CTTAGCACCTTGGTGGTCGCGAGCAAGTGTC--GAGCTCATGTTGAAGAGCTGTCTACGTCTATCGATCTTACTTTCATG
TGTTCTTTCGTCATCGTTGCTACTTGTGTTGTCGT---TTACCAAATCCTCTTCATTGTTTGTCCTGTGAACCAGAATAA
TATGAGGCCTGTTTGTGATGTCTGATGTACATTGCGCCGTTTAAAATGCTTTTGCCCTGGTGTG--CTCTACTGTCTGCT
TTTCACTATACC------ATTAACAGAAAGAAACTTGATCTTTTATCAGGTGTATATTTCACT-ATTTCATTTTCTGTTA
GTTCTAGTTTGCAAATGTTGTTGTATTTAGATGTTCTACGAACTTGCATTCTGGTTGCATATTTCGTGTGTAACGGTTGA
TATTGTAAAACATAAAG---GAGGGGATCTCTATCAATTTGAGCCGCATTTGCTCGAAAGTCA-GATGCCTGGTCAAAAG
CCCAACTTAATATTTCTTGACTTTCGACCAACATACCTATTTGATTGTTTTCTCTCAGAAGCTTGGGAACGCTAAAACTT
CCCACATT------------------------------------------------------------------------
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>SNPs
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---------------------------------------S-------------------------S--------------
----------------------------S-------------S-------------------------------------
-----------SS----------S-----S------------------------------------------SS------
------S---S---------------------------------------------------------------------
------------S----------------------S--SSSSS--------------------S----------------
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--------------S--S--------S-------S------S-----------------------SSS-----S------
---------S-----------------------S--S---SSSSS--------------------------------S--
---SS----------------S-----------------------S----------------------------------
------------------------------------------------------S-------------------------
-------S-------------------------------------S----------------------------------
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----------------------------------------------------------S--------------------S
S-------------------------------------------------------------------------------
------------S----------------------------------------S--------------------------
-------------------------------------------S--------S----------------S----------
--------------------------------------------------------------------------S--S--
S--------S----------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------S--------------------S--------------------------------------S-----------
---------------------S-----S--S-----S-------------------------------------------
-----S-------------------S--------------------------------------S---------------
-----------------S--------------------------------------SS-----------S----S-----
---------S----S---------------------S-----S---------S-S-------------------------
----------------------------------------------------------------SS-----------SS-
------SSSSS-SSSSSS---------------------S----S------------------S---------S-S----
-----S-----------------------S--------S--S--------------------------S-------S---
------S--------SSSSS-------------------------------------------S-------S--------
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--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_893
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-------------------------------------------------------------------------TTGTCCC
AAACCATCCATGC-------------------------------------------------------------------
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>reverse_2197
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------------------------------------AGGGAGGAAGCTCTTCACCT------------------------
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>forward_2182
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--TTCCGGACTCGCAGTACATC----------------------------------------------------------
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>reverse_3176
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-------------------------------------------------------GCATCCAAATGTGCCAGCAA-----
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