>input_sequence_67050
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-------------------------------------------------------ATGGCGACGCCGACCGTAGAGAAGC
CCGACGGGGTGGAGATCCGCGAGGTGTGGGCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGAC
TACCCCTACGTCGCCATGGACACCGAGTTCCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTT
CAACTACGCCACGCTCAAGGCCAACGTCGACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCG
GCCTCCCCGCCCTCGGCCCGGACGGCCGCCCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTC
GCCGCCGCGGACTCCATCGACCTGCTGCGCCGCAGCGGGATCGACTTCGCCCGCCACGCCACCGAGGGGGCCGACTCGCG
CCGCTTCGCCGAGCTGCTCATGTCCTCCGGCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACG
ACTTCGGCTACTTGCTCAAGCTGCTCACCGGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATT
TACTTCCCCGTGATCTACGACATCAAACACTTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGA
GCTGCTCGACGTCGAGCGGGTCGGGATCTGCCATCAGGCAGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGC
TCAAGGAGTCGTACTTCGGCGGATTAACTGAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACC
ACCTCTGTTCACTGAGTAATGGATAGTTAA--------------------------------------------------
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>chr5B_1_TraesCS5B01G224400
CCGGTTTTGACACCGACAACGATAGAGCAATATCTGTATTTGGAGCAAAATATTGTGACGTGTGAACCAGCTCCTTTGAC
GTTGGTTTAATATCCTGGTTCAATATAATCTATCTTGCTCTTACTTTCATGATAGTTGTTGATTGACATGGGAACTAAAT
TAACATGGCCTAGAGCTAATTTATTTTGTGTCTGGCGGCGTTCCATTTTTGCTACCATGACATTTTTTTCTTCCATGGCA
AACATGTTTCATTGCCTTGGTTGTATTTTTCTGCAGCGACGATCCGTTTTTACTTCCACGGGATCCTTTTCTTTCCCAAG
AGTTTGTTTTCATTGCCATGGTGTATTTTTTTCACCACGCCTGCCTATTTTTAGT-TTTTTCACGTCAACCTATTTTTAC
TCGGATGTCAATGCATGAAGAA---------------------------------AAGAAAAAGCTAAAGGAAAGCATAG
AGAAACGAAGACTTGCAATCACCAACCCCAAGTCAAAGAAAGCCCTCTTCATTA--------GAAGAAGCAAAACAAAAC
GAAATTGTTCATCCACACTTGCCCTTGTTTTCCTTGCTGGTTC---CTTCCAATCCAGCCCTTACCTGACGTGCCGTCCT
CACCACCACACAAAAATTGGCCCCGCGAGCCCCACCGGGCAGCCACCCAGGAAGGCGCGCCCCTCCTC---------GCC
GGCAATCATGCCACGGGGCCCACCATTTGCGGGTCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCAC
TTTCCCCATTCGCGTCGCGTTCCCCCCTCCCCTCTTCTTCCCTCGAATCCCCAATCCCACGCTCCTCCCCCCTCCCCTCC
CCTGGATCTCCTCATCCCGCCCCGCCCCGC--------------------------------------------------
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--------------------------------------------------------------------CCCCGCCTCCCC
GCCCACGGGAGCCA--CCGCCCCTCGCCGCTCGCCCGTGGGCCCCGCCGCCTCCCGCTCCGCCGCACCACCCAGCTCCGA
CGCTTCCAGGAAGGAGAGGGGAGGAC-AGCTCGAATCTTTGATGCCCGGTAGCCGATGGCGACGCCGACCGTAGAGAAGC
CCGACGGGGTGGAGATCCGCGAGGTGTGGGCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGAC
TACCCCTACGTCGCCATGGACACCGAGTTCCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTT
CAACTACGCCACGCTCAAGGCCAACGTCGACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCG
GCCTCCCCGCCCTCGGCCCGGACGGCCGCCCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTC
GCCGCCGCGGACTCCATCGACCTGCTGCGCCGCAGCGGGATCGACTTCGCCCGCCACGCCACCGAGGGGGCCGACTCGCG
CCGCTTCGCCGAGCTGCTCATGTCCTCCGGCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACG
ACTTCGGCTACTTGCTCAAGCTGCTCACCGGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATT
TACTTCCCCGTGATCTACGACATCAAACACTTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGA
GCTGCTCGACGTCGAGCGGGTCGGGATCTGCCATCAGGCAGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGC
TCAAGGAGTCGTACTTCGGCGGATTAACTGAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACC
ACCTCTGTTCACTGAGTAATGGATAGTTAAATAAATGATGAACTATTTATGAGAGGAAGGAGAAACCTGTCTGGTGAATG
TGTGATGTCTGATTATATCCTCTTGCTTGACACCGAAAAAGGTACCACTTTTCCCTCAATTGTGATACTCCTCAATGAGT
TTGTTTAGCTTAGATGACTGCGTTTTTGTTGTTTGATTTTGCGTGCTGAAGTTGATGGCATGATGAAACACCCTCTAGAT
ACTGGTTAAAGTCCACCTATGCTGATTCTTCACACGTCCTGTAGAGTTAAACACTT----GCTAGCAAAAAGAACACTTC
TTTTGTCATGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTGGATCACTAGAGTAGTTTTCTAAATGCTCTTATATTTC
TTTACAGACGGAGTATATAGTGTTGATTGCTTACTGTTGTGTGTTCTGTTTGAGGAATCACCTACCTCCTGTCATGGGCA
GGCGCATGGCTAACCATCGCAGCCAAGGACTCCAATTCTATCACTAGTTGGTTTAAGCTATCTAGTACT-----------
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-ATTATACAGGTCCATGCTTCCATACCAATAGGGTTCTTTCTGGTGTCGAACTTACCAAGGACTGTATTATGTGAAGAGG
GGCATCATTTAACCATTTATTAGGAGATTAAGCAGAGATGGCCAAAGATTTTTTTTCCCAGTCATGAGCTCAGAGTTTCT
GTGTCATGGACCAGGATAAGCACAGCTGTTGTTCATATATATTGTCAGGATTCTTTTTAGTTTCATAATTACTCCCTCTG
TAAAGAAATATAAGAGCGTTT-GATCACTACTTAGCATTTAGCAAGGA-------ATGTC--------------------
--AATAAGTCAAGAAACTTTCCCTAGACATGATTCCGAGTCTCAACATCATGTA----TGTACCAGGACATGATTCCGAG
TCTCAACTGTCCCTAGACATGATTCTGAGTCTATTATGTCAGTAGTCTGCCTGAGGATCAGAGGATGATTTCAGATGCTG
CCCTCTCTGGTAGTCTGGTCACACCCATCAACCCATCTTC
>chr5D_24
AGAA-----------------------CAATATCAGTATTTGGAGCAAAATGCTATGATGTGTGAACCCGCACCTTTGAC
GTTGGTTTAATATCCTGGTTCAATGTAATGTATCTTGCTCTTATTTTCATGATAGTTGATGACTCACATGGAAACTAAAT
TAACATGGCCTAGAGCTTTTTTTGTGTGTGTCTCATGGCGTTCCATTTTTGCTACCATGACATATTTTTCTTTCATGGGA
AACATGTTTTATTGCCATGGTTGTACTTCTTCGCAGCGACGGTCTGTTTTTAGCGTCATAGGATC---TTTTTTCACAAG
AGTCGGGTTTCGTTGCTATAGTGTATC-TTTTCACCGCGACAGCCTACTTTTACCCTTTTTTAAGTTAACATATTTTTAC
TCTGATGTTAATATATTCGTTGCAAACCACGGACATTTTTCATGTGAAGAAGAAGAAGAAGCAGCTAAAGAAAAGCGTAG
AGAAATGAAGACTTGCATTGACCAACCCCAAGTCAAAGAAAACCCTCTTCATGG--------GAAGAAGCAAAACAAAAC
CAAATTGTTCATGCACACTT-CCCTTGTTTTCCTTGCTGGTTC---C----AATCCAGCCCTGACCTGACGTGCCGTCCT
CACCTCCACACAAAAATTGGCCCCGCGAGCCCCACCGGGCAGCCACCCAGAAG---GCGCCCCTCCTCAAGCTGTCGGCC
GGCAATCATGCCACGGGACCCACCATTTGCGGGGCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCAC
TTTCCCCATTCGCGTCGCGTTCCT-CCTCCCCTCTTCTTCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCCCCACCTCCCC
GCCCACGGGAGCCA--CCGCCCCTCGCCGCTCGCCCGTGGGCCCCGCCGCCTTCCGCTCCGCCGCACCGCCCAGCTCCGA
GGCTTCCAGGAAGGAGAGGGGAGGAGAAGCTCGAATCTTTGATGCCCGGTAGCCGATGGCGACGCCGACCGTAGAGAAGC
CCGACGGGGTGGAGATCCGCGAGGTGTGGGCGGAGAACCTCGAGGCCGAGTTCGCCGTCATCCGGGAGATCGTCGACGAC
TACCCCTACGTCGCCATGGACACCGAGTTCCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTT
CAACTACGCCACGCTCAAGGCCAACGTCGACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCG
GCCTCCCCGCCCTCGGCCCGGACGGCCGCCCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTC
GCCGCCGCGGACTCCATCGACCTGCTGCGCCGCAGCGGGATCGACTTCGCCCGCCACGCCGCCGAGGGGGCCGACTCGCG
CCGCTTCGCCGAGCTGCTCATGTCCTCCGGCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACG
ACTTCGGCTACTTGCTCAAGCTGCTCACCGGCTCCAACCTGCCGGACACCAGCTCCGGCTTCTTCGACCTCATCAGGATT
TACTTCCCAGTGATCTACGACATCAAGCACTTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGA
GCTGCTCGACGTCGAGCGGGTCGGGATCTGCCATCAGGCAGGCTCCGATTCACTGCTGACCGCGCTCTCCTTCAACAAGC
TCAAGGAGTCATACTTCGGCGGATTAACTGAGAAATATGCCGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACC
ACCTCTGTTCACTGAGTAATGGATAGTTAAATAAATGATGAACTATTTATGAGAGAAAGGAGAAACCTGTCTGCTGAATG
CGTGATGTCTGATTATATCCTCTTGCTTGACACCGAAAA-GGTATCACTTTTCTCTCAATTGTGGTACTCCTCAATGAGT
TTGTTTAGGTTAGATGACTGAGTTTTTGTTGTTTGATTTTGCATGCTGAAGTTGATGGAATGATGAAACGTGCTCTAGAT
ACTGGTTAAATCT-ACCTATGCTGATTCTTCACATGACCTGTAGAGTTTAACACTTGATAGATAGCAAAAAGAACACTTC
TTTTGTCATGTACTCCCTCGGTAAAGAAATATAAGAGCATTTGGATCACTAGAGCAGTTTTCTAAATGCTCTTATATTTC
TTTACAGACGGAGTATATAGTGTTGATTGCTTACTGTTGTGTGTTCTGTTTGAGGAATCACCTACCTCCCGTCATGGGCA
GGCGCATGGCTAACCATGGCAGCCAAGGACTCCAATTCTATCACTAGTTGGTTCAAGCTATCTAGTACTCCCTCCGTTCC
AAAGTAGATGATTCAACTTTGTGCTAACTTTATACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGGAATGGAGGGAG
TATTATATAGGTCCATGCTTCCATACCAATAGGGTTCTTTCTGGTGTCGAACTTACCAAGGACTGTATTATGTGAAGAGG
GGCATCATTTAACCATTTATTAGGAGATTAAGCAGAGATGGCCAGAGA-TTTTTTTCCCAGTCATGAGCTCAGAGTTTCT
GTGTCATGGACCAGGATAAGCTCAGCTGTTGTTCATATATATTGTCAGGATTCTGTTTAGTTTCATAATTACTCCCTCTG
TAAAGAAATATAAGAGCGTTTAGATCACTACTTAGCATTTAGCAAGGACTGTCAAATGTC--------------------
--AATAAGTCAAGAAACTTTCCCTAGACATGATTCCGAGTCTCAACATCATGTA----TGTACCAGGACATGATTCCGAG
TCTCAACTGTCCCTAGACATGATTCCGAGTCTATTGTGTCAGTAGTCTGCCTGAGGATCAGAGGATGATTTCAGATGCTA
CCCTCTCTGGTAATCTGGTCACACCCATCAACCCATCCTC
>chr5A_415
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--------------------------------------------TGAAGAAAAAGAAGAAGA--CTAAAGAAAAGCGTAG
AAAAATGAAGACTTGCATTGACCAAACCCAAGTCAAAGAAAACCCTCCTGACTGGAAGAGCCGAAGAGGCAAAACAAAAC
CAAATTGTTCATCCACGCTTGCCCTTGTTTTCCTTGCTGGTTCTTCC----AATCCAGTCCTGACCTGACGTGCCGTCCT
CACCTCCACACAAAATTTGGGCCCGCGAGCCCCACCGGGCAGCCACCCAGGAAGGCGCCC-----------CTGTCGGCC
GGCAATCATGCCACGGGACCCACTATTTGCGGGCCCCGCCACGTGGCACCAATCCGACCCGGGCGGCGCACGTCACCCAC
TTTCCCCATTCGCGTCGCGTTCCCCCCTCCCCTCTTCTTCCCCCGAATCCCCAATCCCACGCTCCTCCCCCCTCCCCTCC
CCTGGATCTCCTCCT-----CCCGCCCCGC--------------------------------------------------
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--------------------------------------------------------------------CCCCACCTCCCC
GCCCACGGGAGCCCCGCCGCCCCTCGCCGCTCGCCCGTGGGCCCCGCCGCCTCCCGCTCCGCCGCGCCACCCAGCTCCGA
GGCTTCCAGGAAGGAGAGGGGAGGAGAAGTTCGAATCTTTGATGCCCGGCACCCGATGGCGACGCCGACCGTAGAGAAGC
CCGACGGGGTGGAGATCCGCGAGGTGTGGGCGGAGAACCTCGAGGCCGAGTTCGCCGTGATCCGGGAGATCGTCGACGAC
TACCCCTACGTCGCCATGGACACCGAGTTCCCCGGCGTCGTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCCGACTT
CAACTACGCCACGCTCAAGGCCAACGTCGACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCCGACGAGCGCGGCG
GCCTCCCCGCCCTCGGCCCGGACGGCCGCCCCTGCGTCTGGCAGTTCAACTTCCGGGGCTTCGACCCGCGCACCGACGTC
GCCGCCGCGGACTCCATCGACCTGCTGCGCCGCAGCGGGATCGACTTCGCCCGCCACGCCGCCGAGGGGGCCGACTCGCG
CCGCTTCGCCGAGCTGCTCATGTCCTCCGGCGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTACG
ACTTCGGCTACTTGCTCAAGCTGCTCACGGGCTCCAACCTGCCGGACACCAGCTCCGGATTCTTCGACCTCATCAGGATT
TACTTCCCCGTGATCTACGACATCAAACACCTGATGAGATTCTGCAATAGCCTCCACGGCGGGCTGAACAAGCTCGCTGA
GCTGCTCGACGTCGAGCGGGTCGGGATCTGCCATCAGGCGGGCTCCGATTCTCTGCTCACCGCGCTCTCCTTCAACAAGC
TCAAGGAGTCATACTTCGGCGGATTAACTGAGAAATATGCTGGTGTGTTGTATGGTCTAGGCACAGAGGGCGGGGAAACC
ACCTCTGTTCACTGAGTAATGGATAGTTAAATAAATGATGAACTATTTATGAGAGAAAGGAGAAACCTGTCTGGTGAATG
TGTGATGCCTGATTATATCCTCTTGCTTGACACCGAAAAAGGTACCACTTTTCCCTCAATTGTGATACTCCTCAGTGAGT
TTGTTTAGGTTAGATGACTGCGTTTTTGTTGTTTGATTTTGCGTGCTGAAGTTGATGGAATGATGAAACACCCTCTAGAT
ACTGGTTAAAGTCCACCTATGCTGATTCTTCACACGTCCTCTAGAGTTACACACTT----GATAGCAAAAAGAACACTTC
TTTTGTCATGTACTCCCTCCATCCCACACTATAAGATCGTTTTTCAAGCAAACATAGCTTGAAAAACAATCTTATATTGT
GGGACGGAGGGAGTATATAGTGTTGATTGCTTACTGTTCTGTGTTCCGTTTGAGGAATCACCTACCCCTCTTCATGGGC-
----------TAACCATGGCAGTCAAGGACTCCAATTCTATCACTAGTTGGTTCAAGTTATCGT----------------
------------------------------------------------------------------------------AG
TATTACATAGGTCCATGCTTCCGTACCAATTGGGTTCTTTTTGGTATCGAAATTACCAAGGACTGTATTTTGTGAAGAGG
G---------------------------------GAGATGACCAAAGT-TTTTTCCCCCAGTCATGAGCTCAGAC--TCT
GTGTCATAGACCAGGATAAGCTCAGCTGTTGTTCATATACATTGTCAGGATTCTGTTTAGCTTCATAA------------
-------------------------------TTAGCATTTAGCAAGGACTGTCTATTATGTAAAGAAGAGCAATCATACC
GAAATAAGTCAAGAAACTTTCCCTAGAATTGATCCCAAGTCTCAACATCATGTACTTATGTACCAGGACCAG--------
-------------------------------------GTCAGTAGTCTGTCTGAGGATCAGAGGATGATTTCAGATCCTA
CCCTCTCTGGTAGTCTGGTCACACCCATCAATCCATCCTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------------SS-S---S---------S--S--------
------------------------S----S-------------S--------------S---S-S------S--------
-----------------SS---SS-S-------SSS---------------------------S--------S-----S-
---------S------S--------S--S-SS---------S--S-------SSSS--SS-----SSS--S----S----
---SS-S----S----S--S------SS--------S--S-S-----S-----SS------S-S--S---S---------
--S-----S---SS--SSSSSS--------------------------------------S---------S-----S---
-----S-----------S-S---------------------S-----------S--------------------------
S----------------------------------------------SSSS-----------S-----------------
----S---------------------------------------------------------------------------
-----------------S---------------S----------------------------------------------
------------------------------------------S-------------------------------------
-------------S-SSSSS------------------------------------------------------------
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S------------------------S------------------------------------------------------
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----------S---------------------------------------------------------------------
-------------------------------------------------------S------------------------
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--------S-------------------------------------------------S---------------------
-------------------------------------------------------------S------------------
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---------------------------------------------------------------------S----------
-----------------S-----------------------------------S--------------------------
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-------S------------------------------------------------------------------------
------------------------------------------------S-------------------------------
---------------------S--------------------------------S-------------------------
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-------------------------S---------S-------------------------------------------S
-------------------------------------S--
>forward_368
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----------------------------TTTTCACCACGCCTGCCTAT--------------------------------
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>reverse_2658
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-----------------CGCAGCCAAGGACTCCAATT-------------------------------------------
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