>input_sequence_67039
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-------------------------------------AACTTCCTCCACGATCAAAAACAAAACCATCACCACACCCTCC
-TCTCCCTGAGGCCAACCCAACACACACACACACGCCACCAAATTCATCAAGAAACCTG-GAGAGGATCATGGCCGGCGT
GAACACCAGTGTGGTCGGCCTCAAGCCCGCCGCGGCGGTGCCGCAGTCCGCCTCGCCGGCGACGGCAAAGCGCGTGCAGG
TCGCCCCGCCCAAGGACCGGCGGGCGGCGCTTCTCGGCCTGGCGGCCGTCTTCGCCGTCACCGCCGCCTCCGCCGGGTCG
GCCAGGGCAAGCGTCTTCGACGAGTACCTCGAGAAGAGCAAGCTCAACAAGGTCCGTTCTGTTTCCTTCCTTCCCTGTCA
CCGTCGGTCAGTTTGTTGCTCATTTCTCAATGGAGTTCCACGATCTTTTTTTGATGGTTTTTGCGTGTGATCAGGAGCTG
AACGACAAGAAGAGGGCGGCGACGAGCGGCGCCAACTTCGCGCGCGCCTACACCGTCCAGTTCGGCAGCTGCAAGTTCCC
CTACAACTTCACCGGCTGCCAGGACCTCGCCAAGCAGAAGGTAGCTCTCCTGTTTAATTAACTCCCCATGGCCGGATGAA
CTCTAAGCTCTGGCTGGCTGACGATCATGTCTTGTGACTTGTGTGGCTGCAGAAAGTCCCGTTCATCACCGACGACCTCG
AGATCGAGTGCGAGGGGAAGGAGAAGTTCAAGTGCGGATCCAACGTCTTCTGGAAATGGTGAAGCCGGTCGATCTGCCAG
GCAATATGGCGAGTGCTGATGTACTTCAGCGCACCGCGTGTACCTAGATCGATGTCCAAGCTGCACAAGTGTTTCGACTG
TGAAGTTATCGTCG------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G133500
TTGTGTAGATATGATAGTCTGACGCTCTCACGAGAGCTATTATTGGCATCATAGAGGATGTTGATTCCTACAAATTAAGG
ATCTTGACTTGGATTACAGTTGTAAATACATATATCAACAAGATAAAAATAATGCTCTTATGCACATGCTATCATTGAGT
AATAAAAGTTACTTTGCTCTTTTCATCAATATTTGTTGGGCATCACCGAGGAGTAATTACAATAAAGGTGTAAAGAGATA
GCGACAACTAGGTTGATATTTCCATTATCTAATAAGTTGGAAACACTTTGAGTACACTTGAAAATCATCCGACTTTTAGT
TTTTTATATGCAATAATACAACTTATTATGTTGTTTGTCATGCGTCATCATAAAAGATTCAAAGGATTTGCTTATGTGGT
TGCTAAGTGTACGAGGGATGATTTTTTCTCCCGTGGCAACGCACGGGCATGTTTGCTAGTATGATAATAAATAATAAAGA
TGAAAAATGTATTTGCGCATCCAGGGAATCAAACCCTGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGAT
GCGCTTTGTTGTGCTATAACCCTTGATTAAGCTTAATACACATCAGTACTCGAAAATCCAGTGCACAACTGTCCTATACG
GTTCCATGGAAGAAATAGAAAAGAAAATGTCCTATATGGTTCATCTTTATC------TAAAAGATTCTAATTAGTGGTCG
GAGGTATGAATGTTTCACTGCACACCTTTAGAAACGCCATGTAATTTTGAATAGAGCTAGTA------------------
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-----------------------------------------------TGTACAAATAGCAAATGAGCTGTTTCGCGAGAG
CTCAAGGGTTAAAAATCTAGTGATG------CAGTCGGGTCAAGGCCAAGGCCAAGGCCAAGGAGATCCTGCCCCGTGTC
GCATGGGCCCCATCCCGTAAGGATAATGGGAGCCACCGTGGCGCCAAGGCCAACCAATGGAATGGAAGCAAGCCTCACCC
TATCCACACGCCCACCGCAGCGCCGTTTTCCCTCCACAACTTCCTCCACGATCAAAAACAAAACCATCACCACACCCTCC
-TCTCCCTGAGGCCAACCCAACACACACACACACGCCACCAAATTCATCAAGAAACCTG-GAGAGGATCATGGCCGGCGT
GAACACCAGTGTGGTCGGCCTCAAGCCCGCCGCGGCGGTGCCGCAGTCCGCCTCGCCGGCGACGGCAAAGCGCGTGCAGG
TCGCCCCGCCCAAGGACCGGCGGGCGGCGCTTCTCGGCCTGGCGGCCGTCTTCGCCGTCACCGCCGCCTCCGCCGGGTCG
GCCAGGGCAAGCGTCTTCGACGAGTACCTCGAGAAGAGCAAGCTCAACAAGGTCCGTTCTGTTTCCTTCCTTCCCTGTCA
CCGTCGGTCAGTTTGTTGCTCATTTCTCAATGGAGTTCCACGATCTTTTTTTGATGGTTTTTGCGTGTGATCAGGAGCTG
AACGACAAGAAGAGGGCGGCGACGAGCGGCGCCAACTTCGCGCGCGCCTACACCGTCCAGTTCGGCAGCTGCAAGTTCCC
CTACAACTTCACCGGCTGCCAGGACCTCGCCAAGCAGAAGGTAGCTCTCCTGTTTAATTAACTCCCCATGGCCGGATGAA
CTCTAAGCTCTGGCTGGCTGACGATCATGTCTTGTGACTTGTGTGGCTGCAGAAAGTCCCGTTCATCACCGACGACCTCG
AGATCGAGTGCGAGGGGAAGGAGAAGTTCAAGTGCGGATCCAACGTCTTCTGGAAATGGTGAAGCCGGTCGATCTGCCAG
GCAATATGGCGAGTGCTGATGTACTTCAGCGCACCGCGTGTACCTAGATCGATGTCCAAGCTGCACAAGTGTTTCGACTG
TGAAGTTATCGTCGCTGTAATTTT---ATCATCAAGTGGAATTCTGTAATTTTACCAGG---------------------
-----CTTGTCACATCCAGAACACAAACATTCATCAGTTAGAATCTTTCAACCAAAGCTGCTTAGGCAAATTCGGAATCA
GTTGGAAACACATACACAAAAAAATATGTATATATATACATTTTCCAGGAAAAAAAAT----------------------
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------------------------------------------------------------------TGCGCATCCAGGGA
ATCGAACCCTGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGATGCGCTTGTCTGCCAATTTAAACTTGGT
AAGCACTAATATACAAACGC----AATTCCAAAATTCAGTGCACAACTTGAACATATCTGTCC----TATTGTTCAAACT
TATCTAGATAGTCCATTAGCAATCTATATTAATTAGTGGTCGAAAGATATGTAAGTTAGCCTACAGGCTTTGTAG-AAAC
TTCATCTAATTTAGAATGAAGCTACCCGCAAAATAGTAATAATATAGTGGAGCTAGTATAGCAAATGAGCTGTTGCGCGA
GAACACCAGCGTAGCTAGTCAAATCTGATAGGAGGTGTTTTTTTCCTTTTCGAGACAAGTCAGTGGGATGTGGTGTTTCG
GTCTTCAATCGTCCATGAGCAAAAATGAATGAGTCTACTACATGCAGGGAAACGTTCTTACGAATGAAACTTAATGTGTG
ACGTGAAAACACGCAAGTAAAAATCAGGGGCTCCACGATAAGTAATTGGAGGGATCAGGGGGGAGAAGAACATGAAATGC
TATTTATAGCCTACCATGGACTGTTAGTTAGCGCTCGCCCAGACGGAGAATATCCGGTGCACCGAACTCCCATAGCACGT
TTTTAAATTTTCAAAAATTCGGACAAACATTTATCACATTGACACAACATCAATTTATGTTGTCAAAAAAATAAATCAAA
TCAAAATCTGAAACATAGCTCGTAAAACAAAAATGACAAAATTCACACTCAATAGTAAATAACATAAATTGGGCTTTAGA
TTTGGCCCATTACCATACTG
>chr2D_493
AAAAATTGCG----------------------------------------------------------------------
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-----------------CATCCAGGGAATCGAACCCTGGTCAGTAGCGTGGGAGGGTACTATGATACCACTACACCAGAT
GCGCTTGGTTGCCTTTTGACCATTGATTACGGCTAATAAACATTAGTACTCTAAAATCCAGTGCACAGCTATCCTATGTT
TCAAA----------------------------------------TTTAACTAATAATAAAAGATTCTAATTAGTGGTCG
GAGATATAAAGGTTTCACTGCACGCCTTTAGAAACGTCATGTAGTTCTGAATAGAACTACTAGTATA-------------
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-------------------------------------------------------------------TGTTTCGTGAGAG
CTCAAGGGTTAAAAATCTAGTGATG------CAGTC------------AGGCCAAGGCCAAGGAGGTCCTGCCACGTGTC
GCATGGGCCCCATCCCGTGAGGATAATGGGAGCCAGCGTGGCGCCGTGGCCGGCCAATGGAATGGAAGCAAGCCTCACCC
TATCCACACGCCCACCGCAGCGCCGTTTTCCCTCCACAGCATCCTCCACGATCAAAAACAAAACCATCACCACGCCCCCC
-TC-CCCTGAGGCCACACACGCGCACGAACACACACCAGATCA---ATCAAGAAAACCCCGAGAGGATCATGGCCGGCGT
GAACACCAGTGTGGTCGGCCTCAAGCCCGCCGCGGCGGTGCCGCAGTCCGCCTCGCCGGCGGCGGCAAAGCGCGTGCAGG
TCGCCCCGGCCAAGGACCGGCGGTCGGCGCTTCTCGGCCTGGCGGCGGTCTTCGCCGTCACGGCCGCCTCCGCCGGGTCG
GCCAGGGCAAGCGTCTTCGACGAGTACCTCGAGAAGAGCAAGCTCAACAAGGTCCGCTCTGTTTCCTTCCTTCCCTGTCA
TCACC-GTCAGTTTGTTGCTCATTTCTCATCGGAGTTTGACGATC-TTTTTTTATGGTTTTTGCGCGTGATCAGGAGCTG
AACGACAAGAAGAGGGCGGCGACGAGCGGCGCCAACTTCGCGCGCGCCTACACCGTCCAGTTCGGCAGCTGCAAGTTCCC
CTACAACTTCACCGGCTGCCAGGACCTCGCCAAGCAGAAGGTAGCTCTCCTGTTTAATTAACTCTCCATGGCCGGATGAA
CTCTAAGCTCTGGCTGGCTGACGATCATGTCTT----CTTGTGTGGTCGCAGAAAGTCCCGTTCATCACCGACGACCTGG
AGATCGAGTGCGAGGGGAAGGAGAAGTTCAAGTGCGGATCCAACGTCTTCTGGAAATGGTGAAGCTCATCGATCTGCCAG
GCAATATGGCGAGTGCTGATGTACGCCAGCGCACCGCGTGTACCTAGATGT---TCAAAGCTGCGCACGTGTTTCGACTG
TGAAGTTATCGTCGCTGTAATTTT---ATCATCAAGTGGAATTCTGTAATTTTATCAGG---------------------
-----CTTGT------CAGAACACAAACATTCATCAGTTAGAATCTTTCAAG-AAAGCTGCTTAGGCAAATTCGAGATCA
GATAGGAAA-----------------------------------------------------------------------
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>chr2A_493
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------------TTGCGCATCCAGGGAATCGAACACTGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGAT
GCGCTTAGTTGTTTTGTGACCATTGATTACGGATAATAAACATTAGTACACTAAAATCCATTGCACAGCTAACCTAAGTT
TCAAA----------------------------------------TTTATC------CAAAAGATTCTAATTAGTGGTCG
GAGATATAAAGCTTTCACTACACGCCTTTAGAAACGTCATGTAATTTTGAATAGAACTAGTAGTATGTATTACCTCCGTC
TCGGTGAATAAGTCATTCGCGTAGTTCTAGGTCGACGATTTAACTATCTAAATATGTATTATATGTAACAAAATATATAT
ATTTAGAAACTACATCCGTGTAGAAATCTAGTGATATACTTTTTATGACATATAACATATATTTAATTGCTCAAATCGAT
GACCTAGAACTACGCGAATGACTTATTCACCTAGACGGAGGTAGTACTGTACAAATAGCAAATGAGCCGTTTCGTGAGAG
CTCAAGGGTTAAAAATCTAAATCTAGTGGCACAGTC------------AGGTCAAGGCCAAGGAGATCTTGCCACGTGTC
GTATGGGCCCCATCCCGTAAGGATAATGGGAGCCACCGTGGCGCCAAGGCCAGCCAATGGAATGGAAGCAAGCCTCACCC
TATCCACACGCCCACCGCAGCGCCGTTTTCCCTCCACAGCATCCTCCGCGATCAAAAACAAAACCATCACCACACCCCCC
CTC-CCCTGAGGCCACACACACGCACACA-------CACCAGATTCATCAAGAAAACCTCGAGAGGATCATGGCCGGCGT
GAACACCAGTGTGGTCGGCCTCAAGCCCGCCGCGGCGGTGCCGCAGTCCGCCTCGCCGGCGGCGGCAAAGCGCGTGCAGG
TCGCCCCGGCCAAGGACCGGCGGTCGGCGCTTCTCGGCCTGGCGGCCGTCTTCGCCGTCACGGCCGCCTCCGCCGGGTCG
GCCAGGGCAAGCGTCTTCGACGAGTACCTCGAGAAGAGCAAGCTCAACAAGGTCCGCTCTGTTTCCTTCCTTCCCTGTCG
CCGTCGGTTC----GTTGCTCATTTCTCACCGGAC------------TTTTTGATGATTTTTGCGCGTGATCAGGAGCTG
AACGACAAGAAGAGGGCGGCGACGAGCGGCGCCAACTTCGCGCGCGCCTACACCGTCCAGTTCGGCAGCTGCAAGTTCCC
CTACAACTTCACCGGCTGCCAGGACCTCGCCAAGCAGAAGGTAGCTCTCCTGTTTATCTAACCCTCCATGGCCGGATGAA
CTCTAAGCTCTGGCTGGCTGACGATCATGTCTT----CTTGTGTGGTTGCAGAAAGTCCCGTTCATCACCGACGACCTGG
AGATCGAGTGCGAGGGGAAGGAGAAGTTCAAGTGCGGATCCAACGTCTTCTGGAAATGGTGAAGCTGGTCGATCTGCCAG
GCAATATGGCGAGTGCTGATGTATGTCAGCGCACCGCGTGTACCTAGATGT---CCAAA-CTGCGCAAGTGTTTCAACTG
TGAAGTTATCGTCGCTGTAATTTTATCATCATCAAGTGGAATTCTGTTTTCACCTGGATATGGATATATGCATGTTAGCA
TGTATCTTGTCACATCCAGAACGCGAACATTCATCAGTTAGAATCTTTCAAGCGAA-CTGCTTAGGCAATTTCGAGATCA
GTTGGGAAAACACACGCAAAAAAAAGTAAATGATACCAAGCTGATTCTAACTCTAAGCAAAGATGCAAACCAAGCTGATT
GGCATAAAGCCACCATATTTGCCAGCCACGTCGCCTAGTTAGATTTCCAAGGTTAGGTTACAACACATAGATCACATAGA
TTAATTATCTTTTTGATTATATATACGAATGAGCAATCGGAAAATAAAAATGGGAGAAAAAAATTATGCGCATCCAGGGA
ATCGAACCCTGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGATGCGCTTGTCTATCAGTGAACCTTGATG
AGTCTAAGTGTAGTGTACAGAAAAAATTCCAAAGTCCGGTGTACAACTTGAACGTATATGTATCCTATATGGTTCAAATT
TATCTTGACAGTCCACTAATAATTTAT--TAATTAGTGGTAGAAAGATATAGAAGTTACCCTACAGGCTTCGTAGAAAAC
TTCATCTAATTTAGAATGGAGCTA--------------------------------------------------------
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>SNPs
SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------------------S-------------------------------------------------
------S-----SS-S-S---S-------S-SS-----S----S-------S---------------S--S------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
---S---S--S------------S------------S------------------S------------------------
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--------------------------------------------------------------------------S-----
------------------------------------SSSSSSSSSSSS-------------------------S------
----------------------------------------------------S---------------------------
--------------------------------------S-S------------------------------------S--
---S-----------SS-SS--S-----------S------S-------------S-SS---------------------
-------------------------------------------------------------S------------------
--------S--------------S-------------------------------------S------------------
--------------------------------------------------------S-----------------------
-----------------------------SS------SS------S-------------------S--------------
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----------------------------------------------------------------S---------------
---------------------------------SSSS---------S-------------------------------S-
-----------------------------------------------------------------S--------------
------------------------S------------------------SSSSS--S-------S---------------
------------------------------------------------------S-------------------------
---------------------------------------------------S----------------------SS----
-----S--S---S--S--------SS-SS--SSSSSS-SSS-SSSSSSS-SSSS--SS----------------------
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---------------------------------------------------------------SS--S-SS-SSS-SSSS
-SS-SSSSSSSSSSSS--SS-------------S-S-S---S-----------S---S---SS-------S-------S-
-----S--S------S--SS---S---SS-----------S---------SS------S-----------S---------
------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_1084
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------------------------AGTGATGCAGTCGGGTCAAG------------------------------------
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>reverse_2865
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----------------------------------------------------------------GGGATGTGGTGTTTCG
GTCT----------------------------------------------------------------------------
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