>input_sequence_67031
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--------------ATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATCCATCTCATTTACAACTGGCAACTTTG
ATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGCTTGCCATGCTACGTAGTGCTTTTTTTTGCTGGT
CAACTGATTGTAAGGCCC----AAAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGCTCTTTGGTTATGCTTCC
CTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGATTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAAGAGT
TGGGAGAAGAAAGTGGAAGATGCAGCTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAA
GGATATATGGGTGCATGTGGCTTTCCAATTTGGAATTCCTGCAGCTGTTTTCATTAACCATGCCAACATTTTTCAACTGC
GCAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTTTCTTTGA
AGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTGGACGAACTACCGGTACACAAATGTTCCGCCGATCCATTACTAATT
TAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATACATG---TTTTTTTGTCAGGAACTGGTCACGCAATTCGAC
GTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGGAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGCCGATCT
TCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGACGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGA----
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>chr1B_1_TraesCS1B01G311300
AGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGC
CGGCAGGCGTCCAACGCGGGGAAATCTGAATCTTCTGTTGGATCCCCCATCATCATCAGGAGGA---ACATAGGCTTCCT
GGTCCTGCACAAGGTATGT--------ATCTATGTGCATCTTCTTTCCAATTTCTTTCTGCTCTCAACAATGTAA-----
------CCAGGCTGCA----------------------TGCCGGCTCCATATCATAGCATTCAG-A--AATTTACGATAT
ACATCTAAGCAATGTGGTAATCGTATGCTTTTTTCTAGGATTATTAGGTCAAGAAAAGTTCATTTCCTTGGCGTTCAAAC
GGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGACAAAAAAAATTGACACCCTAGGATCG
TCTGAAACTGTTGCATGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCTATCGTGCAGACAAACCTCTCGGCTCTATT
GGATTTGCCGTGGTTGTGACTTGCGGACATCAAATCTCTTTCAA--TTTCTATCTAAAACAAACAGCACGTTTTTGTCTG
GTCTCTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGTATGTACAC
CCTCTGTTCCTAAATATAGGAAGTTTTGGCACTTAAATTTAAACTGTCAAAACATCTTATATTTAAGAACAGAGGTACTC
CCTTAGTGATCTAAACTCTCTTATACTGTATTTCTTTAC----AGAGGGAGTAGTACATATTTATATTCACCATTTCGCC
ATCTAGAGCTAGCTATGTTAATCATATTTGATATA-TTGGTATCATGCTATGGCATAGCGTATTGCTTTTATTCAGTCAA
ATAGTGAAATCAGCACTGAAAATATATACCTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAATCCGGACATCCTGACGG
ATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATCCATCTCATTTACAACTGGCAACTTTG
ATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGCTTGCCATGCTACGTAGTGCTTTTTTTTGCTGGT
CAACTGATTGTAAGGCCC----AAAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGCTCTTTGGTTATGCTTCC
CTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGATTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAAGAGT
TGGGAGAAGAAAGTGGAAGATGCAGCTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAA
GGATATATGGGTGCATGTGGCTTTCCAATTTGGAATTCCTGCAGCTGTTTTCATTAACCATGCCAACATTTTTCAACTGC
GCAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTTTCTTTGA
AGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTGGACGAACTACCGGTACACAAATGTTCCGCCGATCCATTACTAATT
TAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATACATG---TTTTTTTGTCAGGAACTGGTCACGCAATTCGAC
GTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGGAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGCCGATCT
TCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGACGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTT
CCTGCCTGGCAGTCAATAGAGCTTCAGTATGAGCACGGCCTCCATTGTCTGGGAGCATCAGCAAGAGCCTGCTCGGCGGC
ATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAAGTTA
GCCCAGCATCTGTAACTTTGCACCACACACGCTGTCCATATGAACTCGCACAAAAACA-ATGTACTGATTGATTGACACC
AGCCAGATGCCTTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTC
ATGTCAGGACTCAGGACAGAATTTATGGGATGGAGATCTATATAGAAACTATATGCAGGGGTTTGATCGCTCGTTCAAAG
AAGACAGACATATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCACCGAGCAGGAAA
TAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGCCGTCCCTTCTCCCGCTGCGAGATGAGCTTGGTGGCCAGGTCCCAGCC
TCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTGCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGG
CGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCCGAGGGGGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACGATC
CCGGCCGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGC
GGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCA
CGTAGTTCTTGCCGATGCGGAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACGAGG
TTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCGTG
>chr1D_1
AGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGC
CGGCAGGCGTCCAACGCGGGGAAATCTGAATCTTCCGTTGGATCCCCCATCATCATCAGGAGGAGGAACATAGGCTTCTT
GGTCCTGCGCAAGGTATGC--------ATGTATATGTGC----------ATTTCGTTCTGCTCTCAACAATGTAATAGAG
TAATAACCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCCTA--AATCTACAATAT
ACATCTAAGCGATGTGGTAATCGTATG-TTT-------------------------------TTTCCTTGGCGTTCAAAC
CGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGGCAAAAAAAATCGACACCCTAGGATCG
TCTGAAACTGTTGCGTGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCCATCGTGCAGACAAACTTCTTGGTTCTATT
GGATTTGCCGTGGCTGTGACTTGGG--CATCAAATCTGTTTCAATTTTTCTATCTAAAACAAACAGCACGTTTTTGGCTG
GTCTGTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGTATGTACAC
CCTCTGTTCCTAAATATAGGAAGTTTTAGCACTTCAATTTAAACTGTCAAAACATCTTATATTTAAGAACAGAGGTACTC
CCTTAGTGATCTAAACTCTCTTATA-----TTTCTTTAGAGTTAGAGGGAGTAGTACATATTTATATTCACCATTTCGCC
ATCTAGAGCTAGCTATGTTAATCATATTTGATGTA-TTGGTATCATGTTATGGCATAGCGTATTGCTTTTATCCAGTCAA
ATAGTGAAATCAGCACTGAAAATATAT--CTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAGTCCGGACATCCTGACGG
ATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAACTTTG
ATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGTTTGCCATGCTACGTAGTGCTTTTTTTTGTTGGT
CAACTGATAGTAAGGCCCAATTAAAGGAAGCCGTTTATCGAGTTATATGTTAGTAAATCGAGCTCTTTGGTTATGCTTCC
CTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAAGAGC
TGGGAGAAGAAAGTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCTTACAACCCAACTCATACTCTGGACACAA
GGATACATAGGTGCATGTGACTTTCCAATTTGGAATTCGTGCACTTGTTTTGATTAACCATGCTGACATTTTTCAACTGC
ACAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTCTCTTTGA
AGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTAGACGAACTACCGGTACACAAATGTTCCACCGGCTCATTACTAATT
CAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATATATGTTTTTTTTTTGTCAGGAACTGGTCACGGAATTCGAG
GTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGAAGGAGATCGACAAGATGGTGGGGGGGAACCAGGCCGATCT
TCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGAAGTTATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTT
CCTGCCCGCCAGTCAATAGAGCTTCAGAACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGAGCCTGCTCGGCGGC
ATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGTGTCCACACTCGATCAGCAGTAAATTAAGTTA
GCCCAGCATCTGTAACTCTGCACCACACACGCTGTCCATATGAACTCGCACG-AAACA-ATGTACTGATTGATTGACACC
AGCCAGATGCCTTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTC
ATGTCAGGATTCAGGGCAGAATTTATGGGATGGACATCTATATGGATACTATATGCAGGGGTTTGATCGCTTGTTCTATG
TAGCCAGACATATCAATTACTATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCGCCAAGCAGGAAA
TAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGCCGCCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCAGCC
TCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGG
CGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCCGAGGGCGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACGATC
CCGGCTGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGC
GGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCA
CGTAGTTCTTGCCAATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACGAGG
TTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCGTG
>chr1A_1
AGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGC
CGGCAGGCATCCAACGCGGGGAAATCTCAATCTTCGGTTGGATCCCCCA---TCGTCAGGAGGCGGAACGTAGGCTTCTT
GGTCCTGC-CAAGGTATGCATGGATTGATGGATATGTGC----------ATTTCATTCTGCTCTCAGCAATGT-----AG
TAATAAGCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCTTTTTAATCTACAATAT
ACATCTAAGCAATGTGGTAACCGTATG-TTTTTTCTAGGATTAGTAGGTCAACAAAAGTTCATTTCTTTGGCGTTCAAAC
GGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGTATCTCCTTTGGATG-AAAAAATTGACACCCTAGGATTG
TCTGAAGCTGTAGCACGCGGATTCAGGCAAATATGTTGAGCAAAATTCGCTATCGTCGAAACAAACTTCTCAGTTCTATT
GGATTTGCTGTGGTTGTGACTTGCGGACATCAAATCTGTTTCAA--TTTCTATCTAAAACAAACAGCACGTTTTTAGCTG
GTCTCTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTGGAAGAATTGAAGTGCCATTCACCATTTGTATGTACAC
CCTCTGTTCCTAAATATAAGAAGTTTTGACACTTCAATTTAAACTGTCAAAACGTCTTATATTCAAGAACAGAGGTACTC
CCTTAGTGATCTAAACTCTCTTATA-----TTTCTTTAC----AGAGGTAGTAGTACATATTTATATTCACCATTTCGCC
ATCTAGAGCTAGCTATGTTAATCATATTTGATATATTTGGTATCATGTTAT--------------CTTTTATTCAGTCAA
ATAGTGAAATCAGCACTGAAAATAT--ACCTCTTTTTCCTCCTCGTGTACCAGAGTCCAGGAGTCCGGACATCCTGACGG
ATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAACTTTG
ATAACTGAATCGTGCACTAGCATCTGTATTGT------------------------------------------------
-----------------------AAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGTTCTTTGGTTATGCTTCC
CTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACTGATCTAAAGAGT
TGGGAGAAGAAATTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAA
GGATATATAGGTGCATGCAA-TTTCCAATTTCGAATCCCTTCAACTGTATTGATTAACCACGTTGGCATTTTTCAACTGC
ACAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTGCATACTCCGAACTCTCTTTGA
AGCATTCCGATCTTGTTTTCGTGTCCGTGGACGTAGACGAACTACCGGTACACAAATGTTCCGCCAATTCATTGCTACTT
TACCTTTGAGCGAATGCCCAAACTAAATGTCATTTCGATATATGC----TTTTTGTCAGGAACTGGTCACGCAATTCGAC
GTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAACAAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGTCGATCT
TCAGCAGAAGTTCGAACCATACTGCCGGCCAGGCGACGAAGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTT
CCTGCCTGCCAGTCGATAGAGCTTCAGGACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGGGCCTGCTCGGCGGC
ATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAAGTTA
GCCCAGCATCTGTAACTTTGCGCCACACACGCTGTCCATATGAACTCGCACA-AAAACGATGTACTGATTGATTGATACC
AGCCAGATGCCTTGAGATCTCATGAAATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTC
ATGTCAGGACTCAGGACAGAATTTAT--------CATCTATATAGAAACTATATGCAGGGGTTTGGTCGCTTGTTCAATG
AAGCCAGACGTATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCACCGCCGAGCAGGAAA
TAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGGCGTCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCAGCC
CCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGG
CGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCGGAGGGGGACCTGAGGGCCGGCGTGGCCATCTGCATGAGCACGATC
CCGGCCGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGC
GGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCA
AGTAGTTCTTGCCGATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACGACGAGG
TTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCGTG
>SNPs
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-----------------------------------S------------------------------------------S-
--------S---------S----------S---S--SSSSSSSSSSSSS-----S-------------------------
--------------------------------------------S----------S-----SSS-------S---S----
---------------------------S---------------S--------S---------------------------
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------------------------------------------------------------------S------S------
-------------------------------------S--------------------------------------S---
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----------------------------------S---------------------------------------------
-------------------------SSSSS--------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------S--------------------------
----------------------------------------------S----------------------------S----
--------S-----------------------------------------------------------------------
-------------------------------------S------------------------------------------
------------------------S-------------------------------------------------------
--------S----------S-----------------------S-------S-----------SS---------------
S-----------------------------------------------------------------------S-------
----------------------------------S---------------------------------S-----------
----------------------------------------S---------------------------------------
---------------------------------------S----------------------------------------
---------------------------------------S----------------------------------------
--------S------------------S-S-----------------S--------------------------------
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----------------------------------------------------S---------------------------
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----------------------------------S------------------------------------S------S-
---S---------------------------------------------------------------S------------
----------------------------------------------------S---------------------------
---------------------------------------S----------------------------------------
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-------------------S------------------------------------------------------------
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>forward_547
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-----------------------------------------------CGCTATCGTGCAGACAAACC-------------
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>reverse_1948
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---------------------------TATGAGCACGGCCTCCATTG---------------------------------
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