>input_sequence_67028
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-----------------------------------------------ACGGAACCTTCAGGCACACCCAC-----GGCAG
AAAATGGCCAACGGA---GGAGACGAGCTGAAGCTGCTGGGCATGTGGGCGAGCCCATACGTGGTCAGGGTGCAGCTCGC
GCTCCACCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGA------CCTCGCCAGCAAGAGCGAGCTCTTCCTCCGCT
CCAACCCGGTGCACAAGACAGTCCCGATCCTCATCCACAACGGCAAGCCCGTCTGCGAGTCCCAGGTCATCCTCCAGTAC
ATCGACGAGGCCTTCGCCGGCGTCGGCCCGCCCCTCCTCCCCGCTGACCCCTACGAGCGCGCCGTCGCGCGATTCTGGGC
CGCCTACGTCGAGGACAAGCTGCTGGCGCCGTGGGGGAAGGTGTTCAGGG-----TGAAGACCGA------CGAGGAGAG
G------------------------------------------------------------------------GCCGAGT
GGACGAGGCAGACGGCGGCGGCGCTGGGTCCTCTGGAGGATGGCCTCAGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGCGACTGCGTCGGGTACGTTGACGTCCTGCTCGGCAGCATGGTGCCGTGGGTGCGCGCCACCGAGA----
GGCTCTCCGGCGACAA---GTTAATAGA----------------------------------------------------
--------------------------------------CGCCGGCAAGGCCCCGCTGCTGGCGGCATGGATGGAGCGCAT
TAGCGAGCTCGACGCCGCCAAGGCGGTCTTCCAGGACGTCGACAGGGTGGTTGAGTACGCCGGGGCAATACAGGCCCGGC
TTTCCGCCGCGGCTGCTGCAAGCACCCAATAAAGCGGCATGGTGACATGGTGGGTGGGTGGTGCATGCAAGGAGAAAATG
GCCAAGTGTGGAATTAGCTGGAATTACTAAAATGGCCACGTTTCTGTTTCTTTTTCTCGAATAAT---------------
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>chr1A_1_TraesCS1A01G186500
GACAAAAAAAATATCAAAATTAAAAATTACATTCAGGTTCTTATACCATCTAATGACAACTACAACACTAGAGCGAACTG
AAGGAACGGCGCCGTCATCACCCCTCCATTGTCGGAGGTAGGAACACCTTGTTCTAGTAGACAATCGGAAAGTTGACGTG
CTAAGATAGGACCAGTGCACCAGAGCAACAACCGCTGCGGACGAAAAGAAGCGTAGATCGAAAGGATCCAACCTGTATAC
ACACGAATGTAGACGCATGAAGATCATATCCAAGTGGATCCATCGAAGACCAACACCGACCTAATCCTTGAGATCCGTCG
AAGATAAATCTCCACACACACCTTTCGACGATGCTAGAAGCACCATCGGAACGAGAGCTAGGTGGAAAGAATCTTATTCC
ATCTTCAGAAAGCCATTGTCGTCATAGCTTTCTAAGCAGGACACAAACCCTACCAAAACTAAAAAAACATCTAAAAACAG
AGCTCTCTCGCCGGCAAAAACTAGGATCTACGGCATCTTCATGGCTCTAAGGCCACATGAGATGCGACAGACCGGCGGCT
ACGCGGTAGGAGGCAGCAGAAACCCTAGCAATGGTTGCTCTCATGGTTGGAGCGAAGACATCTTCTATATCTAAATAACT
AGTCTCACTAAATATTTATCTCAACATGCAAGCATGCCATATCATCACACAACATGTATTGATGTATGAGAAATGGCTTA
TCCTCACTACCATATCATCACACAAGCATGCCATATCATCTCACCATGCAATCATGTTCACTTCACTATAAACATGCAGG
ATGAAAAAAGATCAATCTCGACATGAAAAGAAAATGTAGGGATGGAATCTGAAACGTGGCTGAGCACCATTGTGCAAGAA
AACACAGGTCATGTACGAGAGCGTGAGCACATGCTGGGGAGAAAAGTCGTCGGCACAAGCATCATGGATGACGCATCGAT
CTTTTATATATTCCGCACTCCACACTAACCACAGAAT-------CCCACGGAACCTTCAGGCACACCCAC-----GGCAG
AAAATGGCCAACGGA---GGAGACGAGCTGAAGCTGCTGGGCATGTGGGCGAGCCCATACGTGGTCAGGGTGCAGCTCGC
GCTCCACCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGA------CCTCGCCAGCAAGAGCGAGCTCTTCCTCCGCT
CCAACCCGGTGCACAAGACAGTCCCGATCCTCATCCACAACGGCAAGCCCGTCTGCGAGTCCCAGGTCATCCTCCAGTAC
ATCGACGAGGCCTTCGCCGGCGTCGGCCCGCCCCTCCTCCCCGCTGACCCCTACGAGCGCGCCGTCGCGCGATTCTGGGC
CGCCTACGTCGAGGACAAGCTGCTGGCGCCGTGGGGGAAGGTGTTCAGGG-----TGAAGACCGA------CGAGGAGAG
G------------------------------------------------------------------------GCCGAGT
GGACGAGGCAGACGGCGGCGGCGCTGGGTCCTCTGGAGGATGGCCTCAGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGCGACTGCGTCGGGTACGTTGACGTCCTGCTCGGCAGCATGGTGCCGTGGGTGCGCGCCACCGAGA----
GGCTCTCCGGCGACAA---GTTAATAGA----------------------------------------------------
--------------------------------------CGCCGGCAAGGCCCCGCTGCTGGCGGCATGGATGGAGCGCAT
TAGCGAGCTCGACGCCGCCAAGGCGGTCTTCCAGGACGTCGACAGGGTGGTTGAGTACGCCGGGGCAATACAGGCCCGGC
TTTCCGCCGCGGCTGCTGCAAGCACCCAATAAAGCGGCATGGTGACATGGTGGGTGGGTGGTGCATGCAAGGAGAAAATG
GCCAAGTGTGGAATTAGCTGGAATTACTAAAATGGCCACGTTTCTGTTTCTTTTTCTCGAATAATAATGGCGACGTTTCT
CAGGAACACATCACATGCAAGCATGCGGTATTATCAGTTTGAAAACTTGTGTGGTCGTTGTGACAGCTCCTCCTCTGTTT
TTCAAGGCACATTTACATTTCTGTCCTTGGCTTTGTCACATTAGTGGGGTTTGTTTTTTGGGTTTTAGGTTACTCAATTT
TGCCATTGAAAGATTATATGTTTTTACAA---------------------------------------------------
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----------------------------------------------------TTTTGTCTTTTCGTCATGGTTTCGTCCG
GTGAAATGCCCTTGACCATTTCCTTGCTCTAAAATACCTAGGTGTATGTGCTGAAACGATGTGAAAAAAGATTCACTAAA
TTATACATGTACTCAATAC---TATATGGAAAAGAAATTTAAGCTCAGTTGGACCAAAGGTTTGGGAGATATTGATAGTT
TTACTTGCCCGACGGTCATGTTTAGGTATTTTGTCATGCGTGCACTTACAAGCGAGGCCCAACCTTTAAAAATTACATCA
ACGTACCTCAATATTGAAATAGACCTA-----------------GCCGCAATGACTTACACCAATATGTTATGTGGTATT
TCGGTTTATTCAATTCCCTCTCTTAGAACTAACGTGTCCTCTGATTTTCTACCAGAAGCCCTTGTCGAGTCACCCCCTCG
TCGGCGGCCGCTCGGAATCCTTTTGAGAAAGAGAGATATATTATCTTTT-TTTTTATTGGTGTGTTCCATATGTGTGACT
TGGCTTCGGAGAGAGATGGTCTATTTTAATTCTTTTCTTTTTTTGGGGGCGGGTCCGAAGTGTAAGGGGCATAACCCATC
TTACATAACCCATCTTACAGTTATCAAGGATATTCTAGGCCAAGGAAATGGTCGACAACCGGACAGAATTGATACTGGGC
ACCAAAAGCATAATAGCACATCGGTTCTCAGGAGGCAAAACATAGTCTTGAAAATCTAGATGGCATGATTTGAACCATTT
AACTTCAGTTACTAGGTAGGTGGACAGATTTGAACCTAGATGACATGAATGAAAACATAACTCACTTGT
>chr5D_22
---------------------AAAAATTGCATCCAGATCCGTAGACCACCT-----------------------------
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--------------------------------AGCGACGACTACAACCGCTGAAGCGAGCTGAAGGCGTGC---------
--------------CGCCGTCATCGCCCCTCCCTTGCCGGAGCCGGGCATAACTTGTTGTAGTAAACAGTC---------
-----AGGAAGTCGTCGTGCTAAGGCCCCATATGACTAACGCACCAGAACAGCAACCGCCACCGA------TGAAGAGAA
GCGTAGATCGAAAGGATCCAACCTGAAGACACACG-AACAAAGACGAAA-AAAGACCGGATCCGAGCAGATCCACCAAGG
ACAACCACTGACCGAATCC--CGCGAGATCCTCCGGAGACACACCTCCACATGCCCTCCGACGATGCTAGAT--------
----------------------------------------------------------------GCATCACAAGGACAGG
GGCTAGGCGGGGAGAA---TTTTGTTCCATCTTCAGGGAGCCACTACCGTCTCGTCTTCCTGAGTAGGACACAAA-CCCT
AACAAAACTTGAAGAAGCACCTAAAAACGAAGCCCTCCTGCCGGCAAGGGACGGGACCCACCGCGCACCC----------
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------------------------------ATGGCCCTAAGGCCACAGGAGACGTGGCAG----ATCGGCGG--------
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----------------------------------------------------CT--------------------------
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>chr5A_45
--------------------------------------------ACCACCT-----------------------------
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--------------------------------AGCGACAACTAGAAGCACTAAAGCGAGACGAAGGCGTAG---------
--------------CACCGTCATCGCCCCTCCCTCGTCGGAGCCCGGCACAACTTGTTGTAGTAAACAAATG--------
------GGGAGTTATCGTGCTAAGTCCCCACAGGACCAATGCACCAGAATAACAACCACCGTCGA------TGAATAGAA
GCGTAGATCGAAAGGATCCAACCTGAAAACACACACAACAAAGACAAAAGAAAGACCGGATTCAAGTGAATCCATTAAAA
ACAACCACCGACCGAATCC--CGCGAGATCCGCTGGAGACACACCTCCACGCGCCCTCCAACGATACTAGAT--------
----------------------------------------------------------------GCACCACCGAGACAGG
GGCTAGGCGAGGAGAA---CCTTGATCCATGTTCAGGGAGCCACCGCCATCTCGTCTTCCTGGGCAGGACACAAACCCCT
AACAAAACTTGAAGAAGCACCTAAAAACAGAGCTCTCTCGTCGGCAAGGGCTGAAATCCA-CGCGCACCC----------
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------------------------------ATAGCCCTAAGGCCACAGGACACGTGGTAG----ATCGGCGG--------
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----------------------------------------------------CGCCGCCGATGGGAGACAGAAACCCTGG
C-------------------------------------------------------------------------------
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>chr1D_852
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---------------------------------------------------AAATGTAGCTGAGCACCGTTGTGCAAGTA
AACACAGGTCATGCACGAGAGCGTGACCACATGCTTAGGAGAAAAGTCGTCGGCACAAGCATCATGAATGACGCATCGAT
CCTTTATATATTCCACACTCCACACTAACCACAGAATACTGAATCACACGGAACCTTGAGGCACACCCAC-----GGGAG
AAAATGGCAGACACA---GGAGACGAGCTGAAGCTGCTGGGCATGTGGGCGAGCCCGTACGTGGTCAGGGTGCAGCTCGC
ACTCCGCCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGA------CCTCGCCAACAAGAGCGAGCTCTTCCTCCGCT
CCAACCCGGTTCACAAGACGGTCCCGATCCTCATCCACAACGGCAAGCCCGTCTGCGAGTCCCAGGTCATCCTCCAGTAC
ATCGACGAGGCCTTCGCCGGCGTCGGCCCGCCCCTCCTCCCCGCCGACCCCTACGAGCGCGCCGTCGCGCGCTTCTGGGC
CGCCTACGTCGAGGACAAGCTGCTGGCGCCGTGGGGGAAGGTGTTCAGGG-----TGACCACCGA------CGAGGAGAG
G------------------------------------------------------------------------GCCGAGT
GGACGCGGCAGACGGCGGCGGCCCTGGGTCCTCTGGAGGATGGCCTCAGGGAGTGCTCCAAGGGGAAGG---------GG
TTCTTCGGCGGCGACTGCGTCGGGTACGTCGACGTCCTGCTCGGCAGCATGGTGCCGTGGGTGCGCGCCACCGAGA----
GGCTCTCCGGCGACAA---GTTAGTCGA----------------------------------------------------
--------------------------------------CGCCGGCAAGGCCCCGCTGCTGGCGGCATGGATGGACCGCAT
TAGCGAGCTCGACGCCGCCAAGGCGGTCTTCCAGGACGTCGACAGGGTGGTTGAGTACGCCGGGGGAATACAGACCCGGC
TTTCCGCCGCGGCTGC---AAGCACCCAATAAAGCGGCATGGCGACATGGTGCGTGGCTG----ATGCAAGGAGAAAATA
GCCAAGTGTGCAATTAGCTGAAATTATTAAACTGGCCACGTTTCTGTTTCCTTTTTCCCG--AATAATGGCGTCGTTTCT
CAGGAACACATAACATACAAGCATGTGATATTACCAGTTTAAAAACTTGTGTGGTCATCGTGACAGCTCCTCCTCTGT-T
TTTAAGGGATATTTACATTTTTGTCCTTGGCTTTGTCACATTAGTGGGGTTTGTCTTTTGTTTTTTAGGTTGCTCAATTT
TTCCATTGAAAGCTTATGTCTTTATGATTTGTCCTTC-------------------------------------------
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------------------------------------------------------------TTTCGTCAAGATTTTGTCCG
GTGAAACGCCTCTGATCATTTCTTTGCTTCAAAATACCTCGCTGTATGTGC-----------------------------
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>chr1B_937
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--------------------------------------------------------AAGCATCATGGATGACGCATCGAT
CCTTTATATATTCCGCACTCCACACTAACCACAGAAT-------CACACGGAACCTTGAGGCACGCCCACCCCACGGGAG
AAAATGGCAGACACA---GGAGACGAGCTGAAGCTGCTGGGCATGTGGGCGAGCCCGTACGTGGTCAGGGTGCAGCTCGC
GCTCCGCCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGA------CCTCGCCAACAAGAGCGAGCTCTTCCTCCGCT
CCAACCCGGTGCGCAAGACGGTCCCGGTGCTCATCCACAACGGCAAGCCCGTCTGCGAGTCCCAGGTCATCCTGCAGTAC
ATCGACGAGGCCTTCGCCGGCGTCGGCCCGTCCCTCCTCCCCGCCGACCCCTACGAGCGCGCCGTCGCGCGCTTCTGGGC
CGCCTACGTCGAAGACAAGCTGCTGGCGCCGTGGGGGAAGGTGTTCAGGG-----TGACGACCGA------CGAGGAGAG
G------------------------------------------------------------------------GCGGAGT
GGACGAGGCAGACGGTGGCGGCCGTGGGTCATCTGGAGGAAGGCCTGAGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGCGACTGTGTCGGGTACGTCGACGTCCTGCTCGGTAGCATGGTGCCGTGGGTGCGCGCCACCGAGA----
GGCTCTCCGCCGACAA---GTTAATCGA----------------------------------------------------
--------------------------------------CGCCGGCAGGGCCCCGCTGCTGGCGGCATGGATGGAGCGCAT
TAGCGAGCTCGACGCGGCCAAGGCGGTCTTCCAGGACGTCGACAGGGTGGTTGAGTACGCCGGGGGAATACAGGCCCGGC
TTTCCGCCGCGGCTGC---AAGCACTCAATAAAGCGGCATGGCGGCCTGGTGAGCAGCTG----ATGCAAGGAGAAAATA
GCCAAGTGTGGAGTTAGCTGGAATTACTAAAATGGCCACGTTTCTGTTTCTTTTTCTCGAATAATGGCG-----------
-------ACATAATATGCAAGTATGTGATATTACCAGTTTAAAAACTTGTGTGGTTGTCGTGACAGCTCCTCCTCTGTTT
TTTAAGGGACATTTACATTTCTGTCCTTGGCTTTGTCACGTTAGTGGGGTTTGTCTTTTGGTTTTTAGGTTGCTCAATTT
TGCCATTGAAAGATTATATGTTAATATGACTAGCACATATGTCCGTGCGTTGCAACGGCAGAAATAACAAAATTATGTTC
AATTTTTGTGATGATTGTATCTGCAGAACACGTTTAGTTCATGCAAACTTTGATCTTAACCAAGATCCATGGAAACATCG
CTAAAACATTTTTAGTGTGGTACTAATGATACACCTCTAATTAATTGTTCCTGTCTTGTCAAGCATCTCATCGAAATTTT
AAAAAAATATTTTCCTTGCAAAAAAATCTTTTAAACTTTGTAGTCATTTATTAACAAAAAACATAATATTTTCTTTACCA
TCACAACGACTATTTTTTCCAACCTTCCTTGTTGTGTGCCTGAACTTACCTGGACAAAAAACCACAAACAGAATTTGCAT
ACTTCAAAGAGCACCAATCAAATAAAAATAAAATGTTTATAAGTAAATCAGCACGAACAGAACATGCTGAGGGCTCAACC
TGCTAAGTGACTGCCTAAAAAAGCCGGCATGAAAGATAAAGCCTGTAAATACATGAATTGAGCAACTAAAGAACATTATA
AGTCACATTATAAATTTCTGACTCACATGTCAGCACTTACCCTGCATGAATATTTTTGGGATCCAAAAGTGTTGACTCAT
GAGTCAGAATAAAAAACTACTATTTTGCTTTGCTCTTTTGAGCATCCAACACAAGGTGTGTGGGACCTACATATTAATTC
ACTGACAGCTTACCTAGTGTACACAGGAGAACATGAGAGAATATCTAGTGTAGCACATCACCACCAAAGAAACTATACAG
GAGAGAGTATCTAGTGAATCAGCCCCTATCATCCCTAGCACCAACTATACAAATCTGGCTTACCTGATGATGAACATAAT
TACTATTGAAACAATAAAATATTAAAAAATATAACAATTGGTCTTGTTTCAGTGAGTACTAGCTAGCAACCTACTCCCTC
CGTCCGAAAATACTTGTCATCAAAATAAATAAAAAGAGATGTATCTCAAACTAAAATACATCTAGATACATCCCCTTTTA
TCCATTTTAATGACAAGTATTTCCGGACAGAGGGAGTAGGCAGCGACGGTGGCCTGATGTTGTTGTTCGCCCAAGGGGTG
GGATGTCTGCAGGCGTCAAAGCGGACCCATCCACATCATATACGTGAGCTTGGTGTAACAGTTGGGATGCCCCATGCGTG
ACATGGAGTGCACGAGCTCGGCAGTTGACATGTATTCCCTCCGTTCCTAAATATAAGTCTTTCTAGAAATTCCACCAAGT
GACTATATACGGAGTAAAATGAGCGAATCTACGCTCTAAAATATGTCTACATACATCCGTATGTTGTATTCCATTTGAAA
TTTCTAAAAAGATATATATTTAGGAACAGAGGAAGTACGTGCTGCCATCTTGGCTGAAGGCGACGAAGGCCTCGACGGAG
GAGGGGCAGGGCCAGAGGAGGAGATGCACACCACCCATTGGGTGGACGTGAGCTAGTTGAACTCCACGGTCCGTTACCCA
TCGTCGTGCTGATTTCATCCGGGCAGAGGCCAAGTGAGCGGAGAAACGTGGCTATTTCGAGCAAGTTGCCACCGCTGTTG
AAGTCGAATCAGAGGAAGAGTCTGCAGAGTTGCAGCAGCTCCTCGACCCGGAGCAACGCATACAAGCAAAACACACACAT
ATGCATCTCTGCTTCTCCAATTCAGCATGCTTCGCACAAAGCATCAGTAACGCATAAGGCACATCACATATGCAACTCAG
ATTCACTATTCAGTTATTCACCGCTGTGTAGAGTCTGCAGCAAGCTAGATGGGATAGGGAGTGCTGTTTGGAGGCAGCCC
CATGTATCTATGGAGGTAATTTATATTTGGGGAGACAACGCTAAGTAGTTGACGCCGCCATTGGGGTGCACGCCGAAGCC
ATGGAGAGGAGCAGCACATGGGCAACGGCTTAGGAAACGACTCGATGGACAAGCTGGCAGCACTCGCCCACCCAGCCAGC
CACCGACCTCGCTGCTGATTCTAGCGGTTGCTTGCAGGACAAGGTCGAGCCCACGCCACCCGCTGCCTCACCCTGTACCA
CTCCCTCCACTGTTCCGCCTGTTGTGCGGCCCGACCTCCTCATCGACGAGGTCTCCAACTCGTGCAGGAGTAGCCCAGTA
GGGCTCTCGCTTGCCTCTCGTCGGTGTCACCCAAGACGCCGCTGAGATGAGCGGAGAGCGAGCTCCCGTCACGCAGTCGC
TAGGATGCGCTGGAGGAGAGCGTGATCCTGTCTCCTAGCCGGCATGCACCGTTGCAGGGCAGCCTAGGACCGGTGGCATA
AGAACGACCACCGTGCAGAAAATCAATGGGACCTCGAGGGGATTAGCCGATTATTTTCCCTTATAGCTTCTGGTACTCAT
GAAACTGGTTTCAGATATGTATACGACTTCCGTTCATCAGTAGGAGTTGGATTACACATGGACACTCATGGACGAACAGA
CTGAGAGGCTACGTACGTATACAAAGCAAAACCACCAGTCGTGCAATGTGAAAATCAGGCCCAACACAGCCCAGTATGAG
ACGGACGAAGAAACCAACAACACCAGCCCACGTACGAAGGCAACGTAATAATGGATTAAAACGGACTAAAATCAGGGTCG
AAAATCAGGGACCAAACCAAAAATACCTATCCCTTTAATAGTAGGTATAGATTTTTGTCTTTTCGTCATGGTTTCGTCCG
GTGAAATGCCTTTTACCATTTCCTTGCTCTAAAATACCTAGGTGTATGTGCTGAAAA-ATGTGAAAAAAGATCCACTAAA
TTGTACATGTACTCAATACTAGTATATGGAAAAT---TTTAAGCTCGGTTGGACCAAAGGTTTGGGAGATATTGATAGTT
TTACTTGCCCGACGGTCGTGTTTAGGTATTTTGTCACGCGTGCGCTTACAAGCGAGGCCCAACCATTGAATATTACATCA
ACGTACCTCAATATTGAAATAGACCTACATAGACCGAGGACCTAGCTGCAATGGCTTACACTAATATGTGT-----TATT
TCGGTTAGTGCAATTCCCTCTCTTAGAACTAACGTTTCCTCCGATTTTCTACCAGAAGCCCTTGTTGAGTCACCCCCTCG
TCAGCGGCCGCTCGGAATCCTTTGGAGAAAGAGAGATATATTATCTTCTCTTTTTATTGGTGTGTTCCATATGTGTGACT
TGGCTTCGGACAGAGATAGTCTATTTTATTTCTTTTCTGTTTTTTGGAA-GGGTCTGAAGTGTTAGGGGCATAACCCATC
TGAT--------------AGTTATCAAGGAAATTTTGGACCAGGAAAATGGTCGACAACCAGACGAAATTGATATTGGAC
GCCAAAAGC-TAATAGCACGTCGCTTTTCAGGAGGCAAAACAAAGTAGCCTTGAAAA-----------------------
---------------------------------------------------------------------
>chr4A_1030
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-AAATGGCCAACGGGAAGGGAGAGGAGGTGAAGCTGTTGGGGGCGTGGGCGAGTCCGTACGTGGCCAGGGTGAAGCTGGC
GCTCCACCTCAAGGGCGTGAGCTACGAGTACATGGAGGAGGA------CCTCACCAACAAGAGCGAGCTGCTCCTCCGCT
CCAACCCCATCCGCAAGATGGTGCCCGTGCTCATCCACGGCGGAAAACCCATCTGCGAGTCGCAGGTCATCGTCCAGTAC
ATCGACGAGGCCTTCCCCTCTGTCGGCCCGGCACTCCTCCCAGTCGACCCCCACGAGCGCGCGGTGGCCCGCTTCTGGGC
CACCTACGTGGACGACAAGGTGCTGCCGCCGTGGGGGATGCTCTTGAGGG-----CAAAGACGGACGAGGTCGAGGAGAG
G------------------------------------------------------------------------GCGGAGT
GGATGAGGCAGACCATCGCAGCGGTGGATGCGCTGGAGGAAGGAGTGAGGGAGTGCTCGAAGAGCAAGG---------GG
CTCTTGGGCGGTGACGACGTCGGCTACCTCGACGTCTTGCTTGGGGGCATGGTCCCGTGGGTGTACGCCACCGAGA----
AGATCTCCGGTCACAACTTCTTCGG-------------------------------------------------------
--------------------------------------TGCCAGCAAGGCCCCGCTGCTGGCGGCATGGATGGAGCGCTT
CGCGGAGCTGGACGCTGCCAAGGCGGTGTTCCAGGACGTCGACAGCTTGGTAGAGTACGCTGGG----------------
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>chr4A_1032
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---ATGGCCGAAGGA---GGAGATGAGCTGAAGCTGCTGGGGTCATGGTCGAGTCCGTATGTCACGAGAGCGAAGCTTGC
CCTCGCCGTCAAGGGCCTGAGCTACGAGAACGTCGACGAGGA------CGTCCACAACAAGAGCGGCCTCCTCCTCGCCT
CCAACCCCGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCGTCCCCGTCTGCGAGTCCATGATCATCGTGCAGTAC
ATCGACGAGGCGTTCGCGGGCACCGGGCCGCCGATCCTCCCCGCCGACCCCCACGAGCGTGCCGTGGCCCGTTTCTGGGC
GGCCTACGTCGACGACAAGCTGGTGTCCCAGTGGACGAACTCGTCCAGGGG--------------CAAGGCGGGGGAGG-
-----------------------------------------------------------------GCAGATCCGCCGAGG
CGATGAAGGAGATGGTGGTGGCCGTGGAGGCCCTGGAGGGGGCCCTGAGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGCGACGGCGTCGGGCTGGTGGACATCGCGCTGGGGAGCATGCACTCGTGGCTGATGGCGATCGAGG----
CCATGTCCGGCGCCAA---GGTGTTCGA----------------------------------------------------
--------------------------------------CCCCGCCAGGACCCCGCTGCTGGCGGCGTGGATGGAGCGTTT
CGGCGCGCTTGATGCGGCCAGGGCGGTCCTGCCGGACGTCGGCAGGGTGGTCGAGCTCGCC-------------------
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>chr4D_1032
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---ATGGCCGAAGGA---GGAGATGAGCTGAAGCTGCTGGGGTCATGGTCGAGTCCGTTTGTCACGAGAGCCAAGCTTGC
CCTCGCCATCAAGGGCCTGAGCTACGAGAACGTCGACGAGGA------CGTCCACAACAAGAGCGACCTCCTCCTCGGCT
CCAACCCCGTGCACAAGAAGATCCCCGTGCTCATCCACAACGGCGTCCCCGTCTGCGAGTCCATGATCATCGTGCAGTAC
ATCGACGAGGCGTTCGCGGGCACCGGGCCGCCGATCCTCCCCGCCGACCCCCACGAGCGCGCCGTCGCCCGTTTCTGGGC
GGCCTACGTCGACGACAAGCTGGTGTCCCAGTGGACGAACTCGTCCAGGAG--------------CAAGAGCAGGGCGGG
G------------------------------------------------------------------------GCCGAGG
CGATGACGGAGATGCTGGTTGCCGTGGAGGCCCTGGAGGGAGCCCTGAGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGCGACGGCGTCGGGCTGGTGGACATCGCGCTGGGGAGCATGCACTCGTGGCTGATGGCGATCGAGG----
CCATGTCCGGCGCCAA---GGTGTTCGA----------------------------------------------------
--------------------------------------CCCCGCCAGGACCCCGCTGCTGGCGGCGTGGATGGAGCGTTT
CGGCTCGCTTGATGCGGCCAGGGCGGTCCTGCCGGACGTCGGCAGGGTGGTGGAG-------------------------
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>chr3D_1040
CGGAGGAGACG---------------------------------------------------------------------
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----------------------AGGAGGTGACGCTGCTGGGCCACTGGGGGAGCGCGTACGTGACCCGGGTCCGGCTGGC
ACTGCAACTCAAGGGCGTGAGCTACTCTTACGTGGAGGAGGA------CCTGCGCAGCAAGAGCGACCTCCTCCTGCGCT
GCAACCCCGTCCACCGCGCCGTGCCCATCCTCATCCACAACGGCCGCCCCGTCTGCGAGTCCCAGATAATCCTCCAGTAC
ATCGACGAGGCCTTCGGACCT------CCCGCCCTCCTCCCCGCCGACCCGCACGAGCGCGCCATCGCCCGGTTCTGGGC
GGCCTACGCCGACGACGTGCTGGGGGCGCCGTGGGAGAAGGCGTACAGGG-----CCGGCACCGA------GGAGGAGAG
G------------------------------------------------------------------------GTCGGGT
GGATGAGGCAGGTGATGGCGGCCACGGACGCGCTGGAGCAGGGGCTTAGCGAGTGCACCGACGGGGGCAGGAAGGGCTGC
TTCTTCGGCGGCGAACGGGTCGGGTTCGTCGACGTCGTGCTCGGCGGCGTGGTGCCGCTGGTGCACGCCACCGTGG----
AGATCTCCGGGGACAGGCTCTTCGGCGA----------------------------------------------------
--------------------------------------CGCCGGCAGGACGCCCCTGCTGGCCGCCTGGCTGCAGCGCTT
CGGCGAGCTCGACGCCGCCAAGGCGCTCCTGCCGGACGTCGACAGGGTCGTGGACTACG---------------------
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>chr2D_1041
GGAG------G---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------AGGAGCTGACGCTGGTGGGGTACTGGTCGAGCCCGTTCGCGTTGCGCGCGCGCTTCGC
CCTCAACCTCAAGGGCCTCCCCTACGCGTACGTGGAGGAGGTGGGCCTCTTCGACGGCAAGAGCCCGCTCCTCCTCGCCT
CCAACCCCGTGCACAAGAGGGTGCCGGTGCTCATCCACAACGGCAAGCCCGTCCCCGAGTCGCAGCTCATCGTGCAGTAC
GTCGACGAGGCTTTCCCGGCCAGCTCCCCGCGCCTCCTCCCTCCCGACCCGCACGAGCGCGCCGTCGCTCGCTTCTGGGC
CTCCTACGTCGACGGCGAGCTGCTCAGCGCGTGGCTGCCCGTCTACGGCGGAC-----GCACCGG------CGAGGAGAG
G------------------------------------------------------------------------GCAGAGG
CGGCGGGGCGGGTCGGCGCCGCCCTGGAGACGCTGGAGCGAGCGTTCGGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGGGACACGGTGGGGCTCGTGGACGTCGTGCTCGGCGGCTTCGTCGGGTGGCTGCAGACGTCCGAGG----
CCATGTGCGGCGTGAGGC---TGCTCGA----------------------------------------------------
--------------------------------------CGCCGCCGCGACGCCGCTGCTGGCGGCCTGGGCGGAGCGGTT
TCGCGCGCTCGACGGCGTCAAGGAGGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr2B_1041
GGAG------G---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------AGGAGCTGACGCTGGTGGGATACTGGTCGAGCCCGTTCGCGCTGCGCGCGCGCTTCGC
CCTCAACCTCAAGGGCCTCCCCTACGCGTACGTGGAGGAGGTGGGCCTCTTCGACGGCAAGAGCCCGCTCCTCCTCGCCT
CCAACCCCGTGCACAAGAGGGTGCCGGTGCTCATCCACAACGGCAAGCCCGTCCCCGAGTCGCAGCTCATCGTGCAGTAC
GTCGAAGAGGCTTTCCCGGCCAGCTCCCCGCGCTTCCTCCCTCCCGACCCGCACGAGCGCGCCGTCGCTCGCTTCTGGGC
CTCCTACGTCGACGGCGAGCTGCTCAGCGCGTGGCTGCCCGTCTACGGCGGAC-----GCACCGG------CGAGGAGAG
G------------------------------------------------------------------------GCAGAGG
CGGCGGGGCGGGTCGGCGCCGCCCTGGAGACGCTGGAGCGAGCGTTCGGGGAGTGCTCCAAGGGGAAGG---------GC
TTCTTCGGCGGGGACACGGTGGGGCTCGTGGACGTCGTGCTCGGCGGCTTCGTCGGGTGGCTGCAGACGTCCGAGG----
CCATGTGCGGCGTGAGGC---TGCTCGA----------------------------------------------------
--------------------------------------CGCCGCCGCGACGCCGCTGCTGGCGGCCTGGGCGGAGCGGTT
TCGCGCGCTCGACGGCGTCAAGGAGGT-----------------------------------------------------
--------------------------------------------------------------------------------
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>chr7A_1044
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------GGAGAGGAAGTGAAGCTGTTGGGGGCGTGGGCTAGCCCGTACGTGGCCAGGGTGAAGCTAGC
GCTCCACCTCAAGGGCGTGAGCTACAAGTACATGGAGGAGGA------CCTCACCAACAAGAGCGAGCTGCTCCTCCGCT
CCAACCCCGTCCACACGATGGTTCCCGTGCTCATCCACGGCGGCAAACCCATCTGTGAGTCCCAGGTCATCGTCCAGTAC
GTCGACGAGACCTTCGCCTCTATCGGCCCTGCCCTCCTCCCTGCCGACCCCCACGAGCGTGCGGTGGCCCACTTCTGGGC
CGCCTACGTCGACGACAAGGTGCTGCCGCCGTGGGGGATGCTCTTGAGGG-----CAAAGACAGACAAGGTCGAGGAGAG
G------------------------------------------------------------------------GCGGAGT
GGATGAGGCAGACCATCGCAGCGGTGGATGCGCTGGAGGAAGGAGTGAGGGAGTGCTCGAAGGGCAAGG---------GG
TTCTTGGGCGGTGATGACGTCGGCTACCTCGACGTCCTGCTCGGGGGCATGGTCCCGTGGGTGTACGCCACCGAGA----
AGATCTCCGGTCACAACTTCTTCGGCGA----------------------------------------------------
-----------------------------------------CAGCAAGGCCCCGCTGCTGGCGGCATGGATGGAGCGCTT
CACGGAGCTGGACGCTGCCAAGGCGGTGTTCCAGGACGTCGACAGCTTGGTAGAGTATGCTGGG----------------
--------------------------------------------------------------------------------
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>chr7D_1044
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------GGAGAGCAGGTGAAGCTGTTGGGGGCGTGGGCGAGCCCGTACGTGGCCAGGGTGAAGCTGGC
GCTCCACCTCAAGGGTGTGAGCTACGAATACATGGAGGAGGA------CCTCACCAACAAGAGCGAGCGGCTCCTCCGCT
CCAACCCCGTCAACAAGAAGGTGCCCGTGCTCATCCATGGCGGTAAACCAATCTGCGAGTCCCAGGTAATCGTCCAATAC
ATCGACGAGGCCTTCGCCTCTGTAGGCCCGACCCTTCTCCCCGCCGACCCCCACGAGCGCGCCGTTGCCCGCTTCTGGGC
CACCTACGTCGACGACAAGGTCTTGTTGCCGTGGGGAATGCTCTTGAGGG-----CCAAGACGGA------CGAGGAGAG
G------------------------------------------------------------------------GCAGAGT
GGACGAGGCAGACCCTCGCAGCGGTTGATGTGCTAGAAGAAGGCGTGAGGGAGTGCTCAAAGCGCAAGG---------TG
TTCTTTGGCGGTGACGACGTGGGCTACCTCGACGTCCTGCTCGGGGGCATGGTCCCATGGGTGTACGCGACCAAGA----
AGATATCCGGTCACAA---CTTCTTGGA----------------------------------------------------
--------------------------------------CGCCAGCAAGGCCCCGCTGCTGGCGGCATGGATGGAGCGCTT
CGCGGAGCTGGACGGTACCAAGGCGGTGTTCCAGGACGTTGACAGCTTGGTAGAGTACG---------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>SNPs
-SS-SS-S-SSSSSSSSSSSS-------S---S---S-S-S--S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S----------S---------S-
-------------S------------S--------SS-------------------------------------------
-S-------------------------------------------S-----------S-------------------S--
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------S--------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------SSS-----------------------S---------S----S--SSSS---------------S
------------------------------------------------------------------------S-------
-----------S-------------S-S-----S------S-----------------S---------------------
--S----S----------------------------------------------S------S---------S--------
-----------------------S--SS----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------S---------------------------------------------SS--------------S-------
--S------------------------------SSSS---------S---------------------------------
-----------------S------------------S------S--------------------S--S--S---------
----------------------------------------------S------S-------S-------SSSSSSS----
------SS-S-------------------------S-----S-----------------------S--------------
--S--------------------S-----------------------S--------------------------------
----------S------S----------S---------S-----S--SSS-----S-------S----------------
-S-SSSSSSSSSSSSSSS------------S---S-S-S---S-S---------------S---SS--------S---S-
S--------S---------S---S--S---------------S---SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_355
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACACACCTTTCGACGATGCT---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_1220
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTCCCGATCCTCATCCACA-----------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TCGCCGGCAAAAACTAGGAT-----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_2139
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGTGACAGCTCCTCCTCTGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------
