>input_sequence_67027
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-----CTATATATACCCATGGAGCCCTAGGAACCAAACTCCATGCCAAAACACACAGCTCACACACATAGCTGCCATTAG
CAACAACCGCAAGCAACTCCATTAACTAG----ATTCATCTCCCACTCAGCTCACCGAGTTGTGCTTATCGCCGTCCATT
TGGGAATCG---TTCAAGATGAAGAAGGCGTCCAGGTTCCTGAAGCAGCTGTTCTCGGCCATCGTGGCCGCGGTGAGGGA
GAGGTCCGCGGCGACGCGCGCCAGGACGAGCGCCGCGCGGACGCGGTTCGTCTTCTTCGGCATCCTCCGCAATAAGCAGC
TCCTGAGGAACGCCATCAACAGCAAGATCCACGCGATCGTGGGAGGCGGCAGCGGCAATGGCCAGCACCTTGTTGCGGCC
GGCGGCGGCGGTAGGACGGTCGCCGTGCTGGAGAAGCTGCCGAGCTTCGTCGCGGATCAGGGGAGGAGGGCCGCTGTGCT
GCTCAACAGCCTGCCGAGCTTCGCCATGGGTAGAGACGGCGGCAGCGACTCGCCGCTGGTCGGCGGCGGTGGCGAGGAGG
GGAAAGAGGAGGGCGACGAGGGCGTGACGAAGCAGCTGCAGCTGGCGAACGTGCCGCCG---GGGTCGGTGATCGAGCAG
GCCCGTGGCGCGGTGGAGCGAGGTGGCGCGGAGTTCAAGCTGGAGGACGAGATAGACCACGTCGCCGACGTGTTCATCCG
GAGGTTCCACGACCAGATGAAGCTGCAGAAGCTTGAGTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGAAACTAATTAA
CGCAAACAGCGGGCGGAATAATCGCCGCGACATTGATCGGTGCG--GTGCGTCGCATGGTTGTGGTT-----GATCTA--
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>chr7B_1_TraesCS7B01G396800
AACCTTAGCGGCGAAGGCTTCCCAATGAAAAAGCTTCCCCGATTAGGAGCTGGATTAATTATCGAGATTCCCTTGATTAA
GCCGAGAGTGGCAATGATCG------------------------------------------------------------
----------------------------------------------------------------------------ATGC
CGGATTAGCCGCCTCAATCCCTATA-TTTGATCATTTC-AAGAGAGGGT-----GTCAGAGGGTGTTTTTTGAGTAAGAA
AAACAGAGGATCCTGGCAGATCCAAAGGGATGGAATGGACTACTTTATATGAAGA----GCGAAATTGTAAGAACGTCTT
GCTAAATTGCACATTTCCATGGCCGCAAATTTTAGCTCAGTGATAAGATACACTTTCGGTTCACACAGATTTATGGAATC
TTCAAGCAGGTACT------------------------------------------------------------------
--------------------------------------------------CTGCATGTTACAAGTTTAGGGTGATAAC--
-------------------------------------------------------------------------AACGACG
CCAAAGATGGTCATGCACTGGAACCATGTGCATGATCCCTGCTGCCCAATATAAGCTC-----------ATGAAGCCCAA
GATCGCTTCACTTAGGGCGCCACAAACGCTAAGAATTAATTTCTGTATGT------------------------------
------------ATATTCAGTCTTTGGATAGCAGAAAGGTATTGGACGATGTACAGTGACAATCAAAGGGAAGTGGGGCG
ATCTCAAATCTGGCACACAGTAGGCAAGTTGCAAATCCAGAAGCAA-ATAATTGTCTTAGCATAACCTCAAAAGAAGCAA
ACCCAACTTTCTCATGGACTACAACTGTGGCGCATGAGCAAGATG-----TATGTAGCTTGGA-----------------
-------------GACACAAGACATCCATTGGTGTTTCTGTTGCTTTTCTATACCTGTGCATGATGCGCATCATCTTTCT
TGCTTCTACTTTGGCTTTAATCACCAGCCTTTGTTGTTACTGGTTACCTTTCCGCCGCCTGCCCAGCCCCACTCATTTCC
TTATGTTTCTTCAGTGCTCGTGATAATTCCTAGGCCTAGCTAACGCTCATGCCGTGCATGTGATGCTGAAGCTTCCTGGA
AGCAGCCTTGAAGAT--AGATAATATA--------ACCACCTTAGTTATATCTCATTAGCAGCTGAGATCA-------CC
A-CCCCTATATATACCCATGGAGCCCTAGGAACCAAACTCCATGCCAAAACACACAGCTCACACACATAGCTGCCATTAG
CAACAACCGCAAGCAACTCCATTAACTAG----ATTCATCTCCCACTCAGCTCACCGAGTTGTGCTTATCGCCGTCCATT
TGGGAATCG---TTCAAGATGAAGAAGGCGTCCAGGTTCCTGAAGCAGCTGTTCTCGGCCATCGTGGCCGCGGTGAGGGA
GAGGTCCGCGGCGACGCGCGCCAGGACGAGCGCCGCGCGGACGCGGTTCGTCTTCTTCGGCATCCTCCGCAATAAGCAGC
TCCTGAGGAACGCCATCAACAGCAAGATCCACGCGATCGTGGGAGGCGGCAGCGGCAATGGCCAGCACCTTGTTGCGGCC
GGCGGCGGCGGTAGGACGGTCGCCGTGCTGGAGAAGCTGCCGAGCTTCGTCGCGGATCAGGGGAGGAGGGCCGCTGTGCT
GCTCAACAGCCTGCCGAGCTTCGCCATGGGTAGAGACGGCGGCAGCGACTCGCCGCTGGTCGGCGGCGGTGGCGAGGAGG
GGAAAGAGGAGGGCGACGAGGGCGTGACGAAGCAGCTGCAGCTGGCGAACGTGCCGCCG---GGGTCGGTGATCGAGCAG
GCCCGTGGCGCGGTGGAGCGAGGTGGCGCGGAGTTCAAGCTGGAGGACGAGATAGACCACGTCGCCGACGTGTTCATCCG
GAGGTTCCACGACCAGATGAAGCTGCAGAAGCTTGAGTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGAAACTAATTAA
CGCAAACAGCGGGCGGAATAATCGCCGCGACATTGATCGGTGCG--GTGCGTCGCATGGTTGTGGTT-----GATCTAAT
TAATCCCTATGATTAAGGCTGAGGTTTATCAATCAAGTAACCTCCGAAGCACTTGAAAAATAACTGTCGCATAC----TG
TCGCTTCCAAATTCGAACCTTTGATTTGCAATCTGACGTACCCAAGCCGGCCCTGAGCAGCAGCTATAAACTTTATATAA
TTTATTTAAAACGTACTGTAAATTCTACTCCTCTTTTTTCTCATATTAATTGAAGAGTAAAAAGCAGTGGACGTCGCTTC
CAAATTTGAACCCTTATTTGCAATCTGACTTACCCAAACCGGCCGTGAGCAGCAATCATATCATAATAGTAGCAAGAAAA
GATGACACTAATTACAGCTAGTATACAATTGTCTCTGGAGCAATTTTAACATGGTACCTATTACGTACCCCCTCTTTTCA
CATGAAAGGTAAAAAGAAAAGAGTTAATCAGACCCACTACTTAAAGAAATCAATGGCTCAGATCTACTCTCCATCCAAAA
ATTCTTGTCTTAAATTTATCTAGATACGGATGTATCTAACACTAAAATTATCTAACATTTTTAAGTTTTAGATACATCCA
TATCTAGATAAATATAAGACGGGAATTTTAGGATGGATGTAATATTATATACTCTTACCTTTTTTTTTGAGTTAACCACA
TATAAGACAATATTTAGGATGGATGTAATATTATATACTCTCACCTTTTTTCTGTCATTCGGGCCAATGAGGCGGCTCAG
GCTGCCATTGCTAAGGCCATGGAGGCCGCGAAGTGCGCTGGTCCTGCGGGGGTTCAGGGCCAGCCCGGGGTGGCAGAGGC
GATTACTGGTTGTGGCCAGGTATCTGCCCCCCCTGCTCGTGTTATCTCTGGCCGTTCCAAGCACTCTAAGTCTTGTGTGG
CCCCGTGCAGATCGAGTCTCCGTATCAAAAATCTTTCTTTTAGATGAGAGCCCTCTTTTGGAATGTTCATGGTTTCGGTG
CTAGGGGGCGTCGGGACCAGATTCATGATTTGGTGTGTGGTG
>chr7D_1
AACCTTAGCGGCGAAGGCTTCCCAATGAAAA-GCTTCCACGATTAGCAGCTAGCTTAACTACCGAGATTCCCTTAATTAA
GCCGGGAGTGGCAATGATCGGGAAGACGCTCCTTTGCCGTGCGCTACGTGCCGTTGGGCCACTGACATGTGGACCAGGTT
CCCAACGGGCTCACATGTTAGTGACGTAATTAATGGCAGGCTGCCGTATGTCAGAGGATCCTTATCCCAATGATCGATGG
CGGATTAGCCGCCGCA----CTATA-TTGGATCATTTC-AGAGACGGTGCTTAGGTCAGAGGGTGCTTTTCGAGTAAGAG
AAACAGAGGATCG-GGTAGATCTAAAGGGTTGGGCTG-----CTTTATATGGACG----GTGAAGTTGTAAGAACGTCTT
GCTAAATTGCACATTGCCATGACTGCAAATTTCAGCTCAGTAATAACATA-------GGTTCGTACTGATTTATGAAATC
TTCGATCAGGAATTGAATAAATATACGTGCCTGCATGTTAATTACTAC--------------------------------
-----------------------------------------------------------ACAAGTTTAGGGTAATAAC--
-------------------------------------------------------------------------AATAACG
CCGATGATGGTCATGCACTGAATCCATCTGCATGGTCCATGCTGCCGAATA--AGCTC-----------ATGCAACCCAA
CATCACTTCATTTTGCACGCAAC-AACGATAATAATTAATTTCTGTG---------------------------------
-------------TATCCAGTCTATGGATAGCAGAAAGGTATTGGATGATCTACAGTGACAATCAAAGGGACGGGGGGCA
GCCTCAAATCTGGCACG--GTTGGCAAGTTGCAACTCCAGAAGCAAGATAATTGTCTTAGCATAACCTCAAAAGAAGCAA
ACCCAATTCTCTCATGGACTACAACTGTGGCGCATGAACAAGATG-----CATGTAGCTTGGAGGCATGCAACCTACAAT
CGGGACCATGCACGACACAAGACATCCATTGGTGTTTCTGTTGCTTTTCTATGCCTGTGCATGATGTGCATCATCTTTTT
TGCTACCACTTTTGCTTTAATCACCAGCCTTTGTTGTTACTGGTTACCTTTCCGCTGCCTGCCCAGCCCCACTCATTTCC
TTATGTTTCTTCGGTGCTCGTGATAATTCC------TAGCTAACCCT-ATGCCATGCATGTGATGCTGAAGCTTCCGGGA
AGCAGCCTTCAAGGTAGAGATAATATA--------ACCACCTTAGTTATCTTACTCTCAGATCAGTGCTCAGTGCTCGCC
A-CCCCTATATATACCCATGGAGCCCTAGGAACCAAACTCCATGCCAAA-------------ACACACAGCTGCCATTAG
CAACAATCGCAAGCAACTCCATTAACCAT----ATTCATCTCCCACTCAACTGACCGAGTTGCGTTTGCCGTCATCCGTT
TGGGAATCT---ATCAAGATGAAGAAGGCGTCGAGGTTCCTGAAGCAGCTGTTCTCGGCCATCGTGGCGGCGGTGAGGGA
GAGGTCCGCGGCGACGCGCGCCAGGACAAGCGCCGCGCGGACGCGGTTCGTCTTCTTCGGCATCCTCCGCAACAAGCAGC
TCCTGAGGAACGCCATCAACAGCAAGATCCACGCGATCGTGGGAGGCGGCAGCGGCAACGGCCAGCACCTTGTTGCGGCC
AGCGGCGGAGGTAGGACGGTCGCCGTGCTGGAGAAGCTGCCGAGCTTCGTCGCGGATCAGGGGAGGAGGGCCGCCGTGCT
GCTCAACAGCCTGCCGAGCTTCGCCATGGGCCGGGACGGCGGCAGCGACTCGCCGCTCGTCGGCGGCGGCGG---GGAGG
AGAAAGAGGAGGGCGACGAGGGCGTGCCGAAGCAGCTGCAGCTGGCGAACGCGGCGCCG---GGGTCCGTGATCGAGCTG
GCCCGTGGCGCGGCGGAGCGGGGCGGCGTGGAGTTCAAGCTGGAGGACGAGATAGACCACGTCGCCGACGTGTTCATCAG
GAGGTTCCACGACCAGATGAAGCTGCAGAAGCTCGAGTCGTTCAAGAGGTTCTGCGAGATGCTCGAGAGAAACTAATTCA
CGCAG-CAGCAGGCTGAATAATCAGCGCGACATTGATCGGTGCGAAGTGCATTCCATGGTTGTGGTTGAATCGATATAAT
TAGTCCCTATGATTAAGGCAGAGGTTTATTAATCAAGTAACCTCTCAAGCACTTGAAAAATAACTGGCGCGTAC----TG
CCGCTTCCAAATCTGAACCTTTGATTTGCAATCTGACGTACCCAAGCCAGCCGTGAGCAGCAG-----------------
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>chr7A_1
AACCTTAGCGGCGAAGGCTTCCCAATGAAAA-GCTTCCTGGATTAGCGGCTAGCTTAACTATCGAGATTCCCTTGATTAA
GTCGAGAGTGGCAATGATCG------------------------------------------------------------
----------------------------------------------------------------------------ATGG
CGGATTAGCCGCCGCAATCCCTATATTTTGATCATTTCAAGAGAGGGTGCTTAGGTCAGAGGGTGTTTTTCGAGTAAGAA
AAACAGACGATCT-CGCAGATCTAAAGGGATGGACTA-----CTACTCTACTATGAGTAGTGAAATTGTAAGAACGTCTT
GCTAAATTGCACATTTCCATGACTGCAATTTGTAGCTCAT---TAACATACACTTTCAGTTGAGTGAAATTTATGGAATC
GTCGAGCAGGTAGAAAATA--------TGCATGCATGTAAATTACTACTACCTCTGTTAACTAATATAAGATATTTTAGA
TCACTAAAATAGTAATCTAAAATGTCTTATATTAGTTTTCAGAGGGAGTACTACACGACACAAATTTAGGCTATTACTCC
CTCCATCCCAAAATAAGTGTCTTAGTATAAAGTTGAGTACTAAGACACTTATTTTGGGATAAAGGGAGTAGCAAATAACG
CAAAAGATAATTATGGACTGAAGCCATCTGCATGATCCGTGCTGCCGAATA--AGCACATCTGCTGACGATGCAACTCAC
AATCA-TTCAATTAGGACGCCAG-AATGATAAGAATTAATATCTGTATATCCCCGTCTTTATCTATAAAGAGAGGCGAAA
GTCTGTTTCAAGATATCCGGTCTTTGGATAACAGAGGCATATGTCGA-ATCTACAATGCCAATCAAAGGGAA-GGGGGCA
ACCTCAAATCTGGCACACAGTTGGCAAGTTGCAACGCCAGAAGCAA-ATAATTGTCTTAGCATAACCTCAAAAGAAGCAA
ACCCAACTCTCTCATGGACTACAACTGTGGCGCATGAGCAAGATGTACAGTATGTAGCTTGGAGGCATGCAACCTACACT
CGGGACCATGCACGACACAAGACATCCATTGGTGTTTCTGTTGCTTTTCTATGCCTGTGCATGATGTCCATCATCTTTTT
TGCTACCACTTTGGCTTTAATCACCAGCCTTTGTTGTTACTGGTTACCTTTCCGCTACGTGCCCAGCCTCACTCATTTGC
TTATGTTTCTTCGGTGCTTGTGATAATTCT------TAGCTAACGCTCATGCCGTGCATGTGATGCTGAAGCTTCCTGGA
AGCAGCCTTCAACAT--AGATAATGTATTAATGTAATCACCTTAGTGATAACTCATTAGCAGCTGAGCTCA-------CC
ACCCCCTATATATACCCATGGAGCCCTAGGAACCAAACTCCATGCCAAAACACACAGCTCACACACACAGCCGCCATTAG
CAACAATCGCAAGCAACTCCATTACCTAGCTAGATTCATCTTGAGTTCT--TGACCGAGTTTCGTCTGCCGTCATCCATT
TGGGGATCGATCTTCAAGATGAAGAAGGCGTCCAGGTTCCTGAAGCAGCTGTTCTCGGCCATCGTGGCGGCGGTGAGGGA
GAGGTCTGCGGCGACGCGCGCCAGGACGAGCGCCGCGCGGACGCGGTTCGTCTTCTTCGGCATCCTCCGCAACAAGCAGC
TCCTGAGGAACGCCATCAACAGCAAGATCCACGCGATCGTGGGGGGCGGCAGCGGCAGTGGCCAGCACCTTGTTGCGGCG
AGCGGCGGCGGCAGGACGGTCGCCGTGCTGGAGAAGCTGCCGAGCTTCGTCGCGGATCAGGGGAGGAGGGCCGCCGTGCT
GCTCAACAGCCTGCCGAGCTTCGCCATGGGCCGGGACGGCGGCAGCGACTCGCCGCTGGTCGGCGGCGGCGA---GGAGC
AGAAAGAGGAGGGCGACGAGGGCGTGGCGAAGCAGCTGCAGCTGGCGAGCGCGCCGGTGGGCGGGTCGGTGATCGATCTG
GCCCGCGGCGCGGCGGAGCGGGGCGGCGCGGAGTTCAGGCTGGAGGACGAGATAGACCACGTCGCCGACGTGTTCATCAG
GAGGTTCCACGACCAGATGAAGCTGCAGAAGCTCGAGTCGTTCAAGAGGTTCTGCGAGATGCTCGAGAGAAACTAATTAA
CGGAAACATCAGGCGGAATAATCACCGCGACGTTGATCGGTGC--AGTGCATTCCACGGTTGTGGTTGAATCGATATAAT
TAGTCCCTATGATTAAGGCAGAGGTTTATCAATCAAGTAACCTCTGCAGCACTTGAAAAATAACTGGCGCGTACGTACTG
TCGCTTCC---TCTGAACCTTTGATTTGCAATCTGACGTACCCAAGCCGGCCGTGAGCAGCAG-----------------
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>SNPs
-------------------------------S------S-------S----S-S----S---------------------
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-------------------------------------------------------------------------------S
-------------S--------------------------SSSSS--SS---------------------S---------
------------SS--------S-----------S--SSSSS---------S-SS-----S-------------------
---------------------S-S-----------------S----S----------------S----------------
---S--------S-------------------------------------------------------------------
----------------------------------------------------S--S-SS-------------S-------
---------------------------------------------------------------------------SS---
--------------------S-S----S----------S-------S----SS-------------------S-S-----
S---S-----S-----S------S----S-------------------S-------------------------------
----------------S-----------------------------S---S----------------------S-----S
-S-------------------S------------S---------------------------------------------
--------S-----------------------------------------------------------------------
----------------------------------------------------S-------------S-----------S-
----S-S------------------------------------------------S------------------------
------------S-----------------SSSSSS--------------------------------------------
---------S---------------------------------------------------------S------------
-------------------------------------------------------------------S------------
------S------------------------------------------S--S---------S-S--SS--S-S------
--------------------------------------------------------------------S-----------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------S-----
------------------------------SS-S-----------------------------------S--SSS-----
S-------------------------S------------------------S--------------------------S-
-------------S------S--S------------------------------------------------------S-
---------------------------------S-----S----------------------------------------
----------S------------S--------------------------S-SS---------------------S----
--S----------------S------------------------S---------------------S---S---------
------------SS--------------------------------------S----------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_54
----------------------------------TTCCCCGATTAGGAGCTGGA--------------------------
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>reverse_1588
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-------------------------------------------------------------------ATCGCCGTCCATT
TGGGAAT-------------------------------------------------------------------------
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>forward_1583
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-------------------------------------------CACTCAGCTCACCGAGTTGT-----------------
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>reverse_2546
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-----------------------------------------------------------------AGTGGACGTCGCTTC
CAAAT---------------------------------------------------------------------------
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