>input_sequence_67009
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-----ATGATGAATGTGCTCTCCAGCGGCAACCCCCAGAACCTTCGCATAATCCAT------CACCACCATCAACACGAC
ATT---TTATTATGTCCACGGCGGAGCAGCTCGTCCCAGCTCGCACTCATCGCAAATCCTCCTAGCCGCACCAGGAGGCC
ATCTTCCGGCTCCTTCCGCCGCGGCGCCGTCGTCCCGGTCAGGGCCGTCGCCGACGGCGGCGGCGAATCCAGCAGCGGCA
AAGACGACGACGACGACGACGAC------CAAGAGAAGAAGCGAAGAAAAGACGACGAGGAGGTATACTA-CTAATCTTG
T----TGCGTGCGTGCACGTCGAGTGCTGACGAACAGAAAG-----CTGG--CTGATCGATTGCAGGGGACGTCGTCGTC
GTCG---GCGTCGTCGAGGCGGAACCGGGAGGAGCTGGAGCGGCTGGTGGGGGCGCCGGGCGACGACGGCTTCAGCGGGC
TCGACCTGGCCACGCTCATCCGGAAGCGCTACGGGCGGAGCTACGACGTGACGCTCATCCGCAAGGTCAGGACACACCTT
TCTCACACAGAGGAATTTGGAAGCAACATACGATAATGGAGGAAGCTGCACTGCAACTGCAACTGCAGGAGTTCATGGGG
CGGAACCTGCTGGCGATGAACGTGATGTGGAAGTACCGGGAGCAGCGCTCCTTCCCGCTGACGGAGGAGGAGTACCTGCT
CCGCCTGGACGACGTGGCCAACACGCTCCGCTCCTGGGGCGCCGTCGCCCACGTCCGCAACTCCCTCGAGACCACCAAGG
ACCGCCCCCGCATCGGCAAGGCCGTCAGCATCTTCATCGACGTCGACTCCGCCGGCGGCGGCAACCGCTCCGACGAATGG
ATCTACAAGTGA--------------------------------------------------------------------
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--
>chr6B_1_TraesCS6B01G473400
GTTTGGTCTGCTCACTGGTGTGGCTGTGGGTGTGGCGTCACGCAAGCCTACCAAAAAGCTA----AACTTGGGGATTTCC
TCCTCTTC--------------------------TCCTCTTCTGAACT----TTCCTTCTCGCCCTCTACCTCCTCT---
------------GAAGCAATCGACCGAGCATCTCC-------TCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTT-----------------AAGCAGTGGTGCTCGCGCCAACTCTGCCGGCCGGCCGGACGCAC------GGGGATTT
GATCTGAAAAAGCTTCCGAGGTAAGTAGA----AATTACCTGGCTGCCTGATTAATTACTCCGCTCAGCTCTCCTGGGTA
AACTTGGTTTCTTGTTTGTTTGTGTTTTTGGTTGCCAATTATTCCTTTAGATTATTCACTAGTATATCTGCATCAGCATG
CATGCTGATTCAGGTTTGTTTAATTCCTCCATTTGTTCA-GTGTGGTTGCGTGGAGGATTTCCATCCATCCAT-------
----ATATTTGTTCTGTATTGCTGCAAAAGCACCATACT----GAGAGTGTTCATCAGTGTGTTTGGA------------
-------------------------------------------AGAAGAGTTAAAAAAAATATCCTTTGTTGTGTTCTTA
CATGTGGTGTGGGGAACAAGAGTTAAAAAGAATTGAAGGAAAAAGATAAAATAAAATTG----GGGGCATTCCGAGAATT
GAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTAGACCAAATGCCCTTTCTTGTGCTCTATTACATCC---
-------------------------------TCACTTATATCTTCAGTGTCAGTACAGTTGGCCAAGATAGTGCTGA---
---------TTCCAGACTCCTCTGTTCCTTTTTTTTTTGGTACACACATAGTGTAAATTTTTTTTTTTACAACTTGTTCA
TACA-TATATTGTGGTTGTGCTTCGTGCTGACAATAGCCTCCCCGTTGACAATAGTCGTCCCTCCATCCTCCAGACAGAC
CGGACAAGTCGATCGATCCATCCATCCTGATCCTGGGGTTGTCCTGTCCAGTCGTGGTGATCGATCGATCGATCGGTCGA
GCTCCATGATGAATGTGCTCTCCAGCGGCAACCCCCAGAACCTTCGCATAATCCAT------CACCACCATCAACACGAC
ATT---TTATTATGTCCACGGCGGAGCAGCTCGTCCCAGCTCGCACTCATCGCAAATCCTCCTAGCCGCACCAGGAGGCC
ATCTTCCGGCTCCTTCCGCCGCGGCGCCGTCGTCCCGGTCAGGGCCGTCGCCGACGGCGGCGGCGAATCCAGCAGCGGCA
AAGACGACGACGACGACGACGAC------CAAGAGAAGAAGCGAAGAAAAGACGACGAGGAGGTATACTA-CTAATCTTG
T----TGCGTGCGTGCACGTCGAGTGCTGACGAACAGAAAG-----CTGG--CTGATCGATTGCAGGGGACGTCGTCGTC
GTCG---GCGTCGTCGAGGCGGAACCGGGAGGAGCTGGAGCGGCTGGTGGGGGCGCCGGGCGACGACGGCTTCAGCGGGC
TCGACCTGGCCACGCTCATCCGGAAGCGCTACGGGCGGAGCTACGACGTGACGCTCATCCGCAAGGTCAGGACACACCTT
TCTCACACAGAGGAATTTGGAAGCAACATACGATAATGGAGGAAGCTGCACTGCAACTGCAACTGCAGGAGTTCATGGGG
CGGAACCTGCTGGCGATGAACGTGATGTGGAAGTACCGGGAGCAGCGCTCCTTCCCGCTGACGGAGGAGGAGTACCTGCT
CCGCCTGGACGACGTGGCCAACACGCTCCGCTCCTGGGGCGCCGTCGCCCACGTCCGCAACTCCCTCGAGACCACCAAGG
ACCGCCCCCGCATCGGCAAGGCCGTCAGCATCTTCATCGACGTCGACTCCGCCGGCGGCGGCAACCGCTCCGACGAATGG
ATCTACAAGTGAACTA----------------------------------------------------------------
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---------------------------------------------------------------------------ACATA
ATCCTGAATTCAAGACCATATATGCGTGAAGCAGACTACATTGCGTACACATGCTCGTATAGCCGGACCAAATGATTCCT
GCGCAGCACAGCAAATTAT-------------------------------------------------------------
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----------------------------------------------------------------------TCTCACGCAG
CCTACATGCTGAATTATGAAATCAAACAATCGGTTGATTCAATCCTTTAAATGAGCAGTACAAAGGCAACAAACATATAT
GACTTCTCTCTATAGTGCTTGGATCGTGAGAGGTCTACAGGTTCAGAAGGTGCCAACTGCTCCCAAAGTTACACAGAGAA
CAATATCTAAAGCACCAAGCTAGAGGTGAATTGTGATGATAAAGAAGTGGTACAGACTGCATCTGGTAACTGAAGTTTAA
TAATGCCCACCTACAGGCGAGGCGACAGCAGAGCTCCCAGTAGTTTGAAATGCAAATACCTTATATGAGAAAAGATGATC
TATCTTGTGCCCTGAACCAGAGGAACTGCTGGAGTCAACCGGCCACAAGCACATGAAGAAACACAAACGGCTAATAGATT
TCAAGTGCAAGAAGAAAACGATAACTTATCACCTGCTTGCAGGCGACAACATACTGTCCCAAGCAGGCGGCGAGTTACGC
TTTCATCTCGGCGAGCGCGAGCTGGAAGGCGTCCGCCTCAACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCGGCCT
TCTTCATCGCCATGCCCAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTCACCAACCCTTGGATCAGACCCTTGACAGCC
TCGAACGGCGGCGCCCACTTGTTGGCCAGGCACTCCTTGCACACCTCCAGGGCAGGGACAAACGCGTTGTTTTCGACCAG
CGCCTCGATCAACATGATATAGGTCTCGAAGTTGGGCGACACACCTTTCCCGTTGAGTCTGGGCACCTCCGGCATCCTCT
TGAACAGCGCCACCGCAGCGCCCACCTCTCCCTCCTTGCAGAGCCCGCCGATGACAGTGTTGAAGCACTCCCGGTTAGGC
GG
>chr6A_1
GTTTGGTCCGGTCACTGGTGTGGCTGTGGCTGTGGCGTCACGCAAGCCTACCAAAAAGCAAGCAGAGCTTGGGGATTTCC
TCCTCTTCCTCTTCTCCCTCTGCTGAACCTTCCTT-----------CCTTCCTTCCTTGTCGCCCTCTGCATCCTCTCAG
CATCTG------------------------------------TCTTCTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTC
GCTGCGA-------------------------------------------------------GCAC------GGGGATCT
GATCTGAAAAGGCTTCCGAGGTAAGTAAA----AACTACCTGGCCGCCTGATTAATTATTCCGCTCAGCTTGGTTTC---
---------------TTGTTAATATTTTTTGCTGCCAATTATTCCTTTAGAAA--ATTGAC---TATCTGCATCAGCATG
CATGCTGACTCGGGTTTGTTTAATTCCTCCATTTGCTCATGTGTGGTTGCGTGGAGGATCTCCATCCATGCATTCATTCA
TAGGATATGTGTTCTATATTATTGCAAAAGTACCATATATACCGAGAGTGTTCAGCAGTGTGTTTGGGGAAACAAAACAA
AAATCCTTCTCACCTACTCTCA---AAACATGCAGGTCTGTGGAGAAGAGTAAAAAAATTAAGG----------------
----------------------------------------AAAAGATGAAAAAAAAAAGAATTGGGGCATTCCGAGAATT
GAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTAGACCAAATGCCCTTTGTTGTATTCCATTCTTTTCAAA
GTCTATTTGTCACGAGGTCTCCGAATCAGTATCACTTAGACTTTCAGGAAAATAGGAGTGGTAGGTTCGGCCAGCG----
---------TTACGGAGTCCTCTGTTTTTCTTCTTTTTTTT---------------------------------------
---------------TTGTGCTTCGTCCCGAAAGACAAATAATTCTTCATT----------CTTCTTCTTCCAGGCTGCT
CATACAAGTCAAGTGG-------ATCC--ATCTTGGGA----CCTGTCGCGTCGTGCTGATCGGC------------CGA
CCTCCATGATGAATGTGCTCTCCAGCGGCCACCCGCAGAGCCTGCGCATCCATCGCCACCGCCACCACCACCACCACGAC
GTG---TCATCATGTCCACGCCGGAGCGGCTCAGGCCATGTCGCAGTTAACCCTCATCCTAGCATG---ACCAGGAGGCT
TTCTTCTAGCTCCTTCCGCCGAGGCGCC---------GTCAGGGCCGTCGCCGACGACGGCGGCGAATCCAGCAGCGGCA
AAGACGACGACGGCGAC---GACGACGACCAAGAGAAGAAGCGAAGAAAAGACGACGAGGAGGTACACTAATCTCTTGTT
CACGTCGA-----------TCGAGTGCTGACGAACAGGGGAGCTGACTGA--GTGGTCGATTGCAGGGGACGTCGTCGGC
GTCG---TCG------AGGCGGAACCGGGAGGAGCTGGAGCGGCTGGTGGGGGCGCCCGACGACGACGGCTTCAGCGGCC
TCGACCTGGCCACGCTCATCCGGAAGCGCTACGGCCGGAGCTACGACGTGACGCTCATCCGGA-----------------
------------------------------------------------------------------AGCAGTTCATGGGG
CGGAGCCTGCTGGCGATGAACGTGATGTGGAAGTACCGGGAGCAGCGCTCCTTCCCGCTGACGGAGGAGGAGTACCTGCT
CCGCCTCGACGACGTGGCCAACACGCTCCGCTCCTGGGGCGCCGTCGCCCACGTCCGCAACTCCCTCGAGACCACCAAGG
ACCGCCCCCGCATCGGCAAGGCCGTCAGCATCTTCATCGACGTCGACTCCGCCGGCGGCGGCAACCGCTCCGACGAATGG
ATCTACAAGTAGTCAATAACTTGTCACCATTCAGCAACGCTAGCTGCGAGCGTATGTCTCCGAGATTCATAAAAATCCCT
TAGCTGAGCAGTTCAAGGGCAAGATATACGACTTGTGTATAACGCTTGGTTATTCCCACTTAGCAGTATCTAATTGACCA
CAGCAAAATATACTTAGCCAGGGCCAGGCAGTGGCGATTCCATGTGTAAGCTGTGGGGTCACCTGACCCCACAGCCTTTT
GGATTTCAAGCATATTTCTATTAATATTTGTGCAAAAAATTACAACATTTTAGAGAGTTTAGTGCATTTGAACCCACAGC
TTTTTGGTGCTGGCACCGCCGTTGGGGCCAGGGGTACAAAATTCCTGCGCAGCACAGAATTCGCATATACGTATGACATA
ATCCTGAATTCAAGACCATATATGCCTGCAGCAGACTACAGTGCATACACATGTTCATATAGCCGGACCGCAACAAAGAA
CAAGTTAGAGTTGCATCATCCAATGTGATAAACCGGCAACTCAAATTCACATGCCCACCTACGGCTATGGGAGCACCCAA
TTAGTCACAATGCAAATACCTTATTATGTGAGGAAAGAACTATCCTATGCACTGAGCCACTGAACCAAAATGTCATATAG
TATGTGAGAAAAATACTACTTATCAGGAACAAAGGCAAGTGTTGAATCATAAATATCTGCAATCTCCTTTGCAAAATACC
GGGTAAAAGGACTGTTCACCTTCATAAATTCAATACTACTGAAATATGAAAGAGCAGGATTGAGTTTTCCTCTCAGGCAG
CCTACATGCTGAATTATGGAATCAAGCAATCTGTTGATTCAATCCTTTAAATGAGCAGTACAAAGGCAACACACATATTG
GACTTCTCTCTGTAGTGCTTGGATCGTGAGAGGTCTAGGGGTTCAGAAGGTGCCCACTGCTCCCAAAGTTACACAGAGAA
CAATATCTAAAGCACCG----AGAGGTGAATTGTGATAATAAACAAGTGGTACAAACTGCATCTGGTAACTGAAGTTTAA
TAATGCCCACCTACAGGCGAGGAGACAGCAGAGCTCCCACTAGTTTGAAATGCAAATACCTTATATGAGAAAAGATGATC
TATCTTGTGTCCTGAACCAAAGGAACTGCTAGAGTCAAGCGGCCACAAGCACATGAAGAAACACAAACGTCTAATAGATT
TCCAGTGAAACAAGAAAACAATAACTTATCACCCGCTTACAGGCGACAACATACTGTCCCAAGCGGGCGGTGAGTTACGC
TTTCATCTCGGCGAGCGCGAGCTGGAAGGCGTCCGCCTCAACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCGGCCT
TCTTCATCGCCATGCCGAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTCACCAACCCTTGGATCAGACCCTTGACAGCC
TGGAACGGCGGCGCCCACTTGTTGGCCAGGCACTCCTTGCACAACTCCAGGGCAGGGACAAACGCGTTGTTTCCGACCAG
CGCCTCGATCAACATGATATAGGTCTCGAAGTTGGGCGACACACCTTTCCCGTTGAGTCTGGGCACCTCCGGCATCCTCT
TGAACAACGCCACCGCAGCGCCCACCTCTCCCTCCTTGCATAGCCTGCCGATGACAGTGTTGAAGCACTCCCGGTTAGGC
GG
>chr6D_4
---TGGTCTGGTCACTGGTGTGGCTGTGGCTGTGGCGTCACGCAAGCCTACCAAAAAGCAA----AGCTTGGGGATTTCT
TCCACCTCTGTTTCTTCTCTTCCTCTTGCTTTTCTCCGCTTCTGAACCTTCCTTCCTTCTCGCCCTCTTCCTCCTCTCAG
CGAGCTCTCCCAGAAGTAATCGACTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTGTTCACGAGCAGGCCGGAGCAAGCAATCGAGCTCGCACCAACTCTGCCGGCCGGACGGACGGACCGGGCAGGGGATAG
GATCTGAAGAAGCTTCAGAGGTTAGTAGTAAGTAACTAGCTGGTTGCTTAATTAATTACCTCCG------CTCCTGGGTA
AACATGGTTTCCTTTTTGTTGCTT--------------TTCTTTCTTTAGATTAGATTGAC---CATCTGCATGCATACC
AGAGGGCT------------------------------------------------------------------------
------------------------------------------------------------TGTTCAGGGAACAAACCAAA
ATATCCTTCCTTCGGGTACTGATGGAAATATTCAGGTGTG----------------------------------------
--TGTGGTGCGGGGAGGAAGACATTTTTTTATAATTA--AAAAAGATGAAAAAAGAAAGATTAGGGGCATTCCGAGAATT
GAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTAGACCAAATGCCCTTTGTTGTGCGTCTTCTCTTACACA
CTTCT------------------------------TTACATCTTCATTATCAGTACAGTTCGCCAAGATAGAATAATCAG
TTTTATCGTTTATAGACTCCTCTGTTCTTTGTACACC----ACACACATAAAGTTACTTTTTACAA--ACAATTTGTTCA
TACTCTATATTGTGGTTGTGCTTCCTCCTGGCAAGTAAACGATTCTT----------------TGTCCCTCCAGGCAGAC
CAGACAAGTCGATCCATCCATCCATCC--ATCTTGGGGTTGTCCGGTCCAGTCGCCGTGATCGAT------------CGA
GCTCCATGATGAATGTGCTCTCCAGCGGCCACCCCCAGAACCTGCGCATGATCCAT------CACCACCATCAACACGAC
ATTTTATTATTATGTCCACGGCGGAGCACCATCAACGCAC---------------ATCCTCCTAGCCGCACGAGGAGGCC
ATCTTCAGGCTCCTTCCGCCGCGGCGCCGTCGTCCCGGTCAGGGCCGTCGCCGACGACGGCGGCGAATCCAGCAGCGGCA
AAGACGACGACGACGAA---GAC------AAAGAAGAGAAGCCAAGAAAAGACGACGACGAGGTACACGCCCTAATCTTG
TTGCGTGCGTGCGTGCACGTCGAGTGCTGACGAACAGGGGAGCCGACTGATCGTGGTCGATTGCAGGGCACGTCGTCGGC
GTCGGCGTCG------AGGCGGAACCGGGAGGAGCTGGAGCGGCTGGTGGGGGCGCCGGACGACGACGGCTTCAGCGGGC
TCGACCTGGCCACGCTCATCCGGAAGCGCTACGGCCGGAGCTACGACGTGACGCTCATCCGGA-----------------
------------------------------------------------------------------AGCAGTTCATGGGG
CGGAGCCTGCTGGCGATGAACGTGATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGAGGAGGAGTACCTGCT
CCGCCTCGACGACGTGGCCAACACGCTCCGCTCCTGGGGCGCCGTCGCCCACGTCCGCAACTCGCTCGAGACCACCAAGG
ACCGCCCCCGCATCGGCAAGGCCGTCAGCATCTTCATCGACGTCGACTCCGCCGGCGGCGGCAAGCGCTCCGACGAGTGG
ATCTACAAATGAACTA----------------------------------------------------------------
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--
>chr6D_1966
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----------------------------------------------------------------------TCTCACGCAG
CCTACATGCTGAATTGTGAAATCAAGCAATCGATTGATTCAATCCTTTAAATGAGCAGTACAAAGGCAACAAACATATAG
GACTTCTCTCTATAGTGCTTGGATCGTGAGAGGTCTACAGGTTCAGAAGGTGCCCACTGCTCCCAAAGTCACACAGAGAA
CAATATCTAAAGCACCA----AGAGATGAATTGTGATAATAAAGAAGTGGTACAAACTGCATCTGGTAACTGAAGTTTAA
T---GCCCACCTACAGGGGAGGCGACAACAAAGCTCCCAGTAGTATGAAATGCAAATACCTTATATGAGAAAAGAT---C
TATCTTGTGTCCTGAACCAAAGGAACTGCTAGAGTCAAGCGGCCACAAGCACATGAAGAAACACGAACATCTAATAGATT
TCAAGTGAAAGAAGAAAGCAATAACTTATCACCCGCTTACAGGCGACAACATACTGTCCCAAGCGGGTGGTGAGTTACGC
TTTCATCTCGGCGAGCGCGAGCTGGAAGGCATCCGCCTCAACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCGGCCT
TCTTCATCGCCATGCCGAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTCACCAACCCTTGGATCAGACCCTTGACAGCC
TGGAACGGCGGTGCCCACTTCTTGGCCAGGCACTCCTTGCACAACTCCAGGGCAGGGACAAACGCGTTGCTTTCGACCAG
CGCCTCGATCAACATGATATAGGTCTCGAAGTTGGGCGACACACCTTTCCCGTTGTGTCTGGGCACCTCCGGCATCCTCT
TGAACAGCGCCACCGCAGCGCCCACCTCTCCCTCCTTGCAGAGCCCGCCGATGACAGTGTTGAAGCACTCCCGGTTAGGC
GG
>SNPs
----------S------------------S-----------------------------S------S-------------
-------------------------------------S---------S--------------------S-----------
----------------S-------SSSS-----S----------S--S--------------------------------
--S------------------------S-S-S------S-----------------S---------------------S-
-----------------------------------S--------------------------------------------
---S-------S-S------SS-S-----S-S----------------------SSSSSSSSSS----------------
--------S--S-----------------------S-----------------------S---------S----------
--------S------S----SS--------S------SS---------------S------------S------------
---------------------------------------------------S------SSS-SSSSSSSSSSSSSSSSSS
SS-------S-----SS----SS-SSSSSS-SSSSS-SS--------S---S----SS----------------------
----------------------------------------------------------S--------S---S-S-S----
--------------------------------------S---------S----------------------SSSS-S---
-----------S---------------S----S-----SS----------SS--S-S-----SSSSSS----S-------
---S----------------------S-------SSSSS-SSSSS--S-SSSSSSSSSSSS--S-S--------S-----
-S-------------------------SS---S--------------------------------SSSSSSSSSSSS---
-----------------------------S-------------S-----S------------------------------
--------------------------------SSS---S------S-S-S-S-SS-------------------------
------S-------------------------------------------------S-----------------------
-----------------SSS---------------------------------------------S--------------
-------------------------------------SSSS--------S--S--S----------------------S-
-------S--SSSSSS-------------------------------------------S--------------------
----------------------------------S--------------------------S-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------
----S---------------------------------------------------------------------------
------S-------------------------------------------------------------------------
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-------------------------S--S-----------S---S--------S--S------------SS-SS-SSSSS
SSSSSSSSSSSSSS--S---------------------------------------------------------------
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-------------------------S-----------------------------------------------------S
------------------------------------------------------S-------------------------
-----------------SSSS----------------S----------------S-------------------------
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---------S---------S----------S-------S------------------------------S----------
-------S-----------S-------------S----S-------------------------S-----S---------
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----------------S---------------------------------------------------------------
-S-----------------------------------------S------------------------------------
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--
>forward_186
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------TCCTCTGAAGCAATCGACCG------------------------------------------------------
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>reverse_2559
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------------------------------------------------------------------------------CT
GCGCAGCACAGCAAATTA--------------------------------------------------------------
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--
