>input_sequence_67006
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---------------------------------------------------------------------------ATGGG
TCTTCCCTTCAGTGCGTTAAACAAATTAGGTAAGTTCTCAAGTCTCAGTTCTTTCTATGGTTTTGTTTTGTTCTATATGC
CGGTGCCA-------TTACATGGTTCTTGTGGCTCCGCACTGTTTTATCTGTTGCTGGAACTTCTGCTCCATATTCTAAA
TTTGTTAGCTTGTGCTGTCGTTCTTCTCAGGAGTGCCAGGGTTGGGCGCAATAACAACCGGACAAGTTTATGATCGACAT
TTTAAGGACAGGGACACGGGCACCTTTAAAGACTTTCATCTTGCATATGTCGAATTCTGCAAGTAAGCTTCCTTCCTGTT
TGTGCAGTTATGTTGCTTGCACTTCTTGTGCCCAA-CCTTTTATGCCTGTCTTCATCTGAAAATGCTTTAGGTATTTCAA
CACTGTGTTGCCTGGCCAAGATTTTGATACTCCGGACCGTGGTGATCTAGAGGTAAACCC--------------------
------------------GATTCGGTGTAAATATTTATGGACATCTGGCAATTGACTGTTACATATGGTCCAAAAACTCA
ACTGAACATGGTACATGCGCATATTGCAGGCATTCCATAAAAAATGGGCAGTGGCGGACGAGCCCGGAAGGAGGAAGATG
TTCATCGAGTATATGCAGGAAAACGTCCACGAGGCCAAAGTTGACGACAGCCTCTTCATCATGGCCGGCCTGGCTGCGCC
AGCGGCAGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGAAGTTCAAGGTGCATCTAATCCCCAACG
TCATCTTTGTGCCGGTGTGCACGCTGGTTGCCATCATGGGTGCCACTGCAGTTCAGATGAGCAAGAAGAGCAAAGACAAC
AACAAGCCTACGAGCTGA--------------------------------------------------------------
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>chr6A_1_TraesCS6A01G089200
ATCACAATATTTGAAGTGTAATCTTGCTGAGGCACAAGATCATCGGGTGAAAATTAAGGTGAGCCCAGTCGTGTCCATGT
TTTTGCATGGCCTAGGTCACCTAAGGTTTATAACTCTGCAAGAATGAACATAA------AATGATATGATACCGTCATTG
AACAGTGACAAGCAGGCGATGCAATGCA--TTTTTGACATTCTTCCATGAGCTCTTCTGAGTTCTGACAGAAAATGTCTA
TGTATATATTGGTAATAGTCTGTTTTTTTGCAGTACAACGACTTGTATCAAAACTGAAATTTAC-TAAAGTGCCCGATCC
ATCTTCTAATTCAAGTGTCTACAGCTGTGTGCTGTTTCTTGGAACTCAGAACATAAACAGATGGTCTCTAAAAGACATAA
AAGGGAAACAGCAGTAGGAATCTCTCCTTTATGAGCTAAAGCATGGTTATTCAATTCGTCTTATGCAAGCAAAAGCATAT
ACATGTGCCGGAAAGCACGTCTAGCATCATCCTTCTAGCTCAGCTCCATTTTCTGCTAAGAAGCAATGTTAGAAGTTAGA
ATGGTCTAAAAACTACACTACCATAACTTG-AGCTTTTGAAGTTTGGCACCTCATTAACCTCAATGTATAGAAGAGTTGG
CTCTTATTTCGCAGCCACACA-------------------TTCTTTCAGTGGTCGGGAG--GCCTAAGTTACCTGGTAAA
TTATGTGCAGAACATTCTTTAGGTGGTAAGAGAAACTAGACCTTGACCCT--TATTGCAGAAACCCAACTAGCAACTGAG
TTTGTAGGTTTTCCCTCGAATAATTCCTGCAGCTCAAGAACCAGGCCAGCTCTAACTTCACTCCCAGGGCAGGAATCAAC
CAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCATTCCAAGCTTGCATTCCCTTAGTTCTCT
GCGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAATC--TCTGTCCTCTTGCCTGCACCAATAATGGG
TCTTCCCTTCAGTGCGTTAAACAAATTAGGTAAGTTCTCAAGTCTCAGTTCTTTCTATGGTTTTGTTTTGTTCTATATGC
CGGTGCCA-------TTACATGGTTCTTGTGGCTCCGCACTGTTTTATCTGTTGCTGGAACTTCTGCTCCATATTCTAAA
TTTGTTAGCTTGTGCTGTCGTTCTTCTCAGGAGTGCCAGGGTTGGGCGCAATAACAACCGGACAAGTTTATGATCGACAT
TTTAAGGACAGGGACACGGGCACCTTTAAAGACTTTCATCTTGCATATGTCGAATTCTGCAAGTAAGCTTCCTTCCTGTT
TGTGCAGTTATGTTGCTTGCACTTCTTGTGCCCAA-CCTTTTATGCCTGTCTTCATCTGAAAATGCTTTAGGTATTTCAA
CACTGTGTTGCCTGGCCAAGATTTTGATACTCCGGACCGTGGTGATCTAGAGGTAAACCC--------------------
------------------GATTCGGTGTAAATATTTATGGACATCTGGCAATTGACTGTTACATATGGTCCAAAAACTCA
ACTGAACATGGTACATGCGCATATTGCAGGCATTCCATAAAAAATGGGCAGTGGCGGACGAGCCCGGAAGGAGGAAGATG
TTCATCGAGTATATGCAGGAAAACGTCCACGAGGCCAAAGTTGACGACAGCCTCTTCATCATGGCCGGCCTGGCTGCGCC
AGCGGCAGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGAAGTTCAAGGTGCATCTAATCCCCAACG
TCATCTTTGTGCCGGTGTGCACGCTGGTTGCCATCATGGGTGCCACTGCAGTTCAGATGAGCAAGAAGAGCAAAGACAAC
AACAAGCCTACGAGCTGATCCCGTCTTGTTCCTGTCTGCAGTTTAAATAAGATGATGTAATAAACAAGAAACCTGGAA-G
CATATTATCATCCAAATGATTGTATAAAATTATACTAATATGCAAGTCATGGGTTAAATATACATGTTCCTTTTGTTGTT
CAAATAGCCAATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACAGTTTGCTACCTTGTTTTCTTCCATATG
TGATATGCCCATTTTCTCACACTTTCTTTGGTGTTCTTTGAACATCAACAGAAATGTGATAATGTTCGGTACCTGTTGTA
AATTTGGTCAGAGTGCACAAATTTCTTGTTCAATCAAAACTCTGTATTATCCCTCGCTTGCAAGACACTGCACTTGCATG
TAAACCTAGATTCCTGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAACACTGCACTT-----GTATGACCGCTAC
AAGAAAGCTAATTTTAAGTGCGATGCAAATCAAGCACGGAATCAAACAAAACATGTTGCTTAAGAAAGAAATATCACCGT
GAAAACATAGCATACAGGCAGCTGAAATGCAAACCGAGGAGAAGTAATTTCGTGACAAGAACTTTCACAGAATGATACTT
TTATCTTACACAGGGGCCTAAAAAATTCCAAAAGAACAATCAG-ACCACCACGTTAATATTTCAATGAGAGCACAAACCA
CCAGAACATCAATGCCTCTGAATTAAGCTAGTACAAGTGCTAAGCTCATGATCTGGATAACACACTTTTACCTCACAGAG
CCTATTCTCTCTGGCAAAACATATTCT-ATTTCAATCAAATTTAGACGAGAACACAGAGAGGAATGTCTGTTACGGCCCC
AAGTTTGCAATCCTAGGAGCTCAGGATACGTAGGTTGTTAGTTATCCTTGCAATAGAACAGTCACTGGGCTGTTGTTACT
TTCCCCTGAAAAGCAAACATGAATAGCAAATACTAGGTAAGTATACGCCAAATAAAGCAAAAAAAA
>chrUn_3
--CACAATATCTGAAGTGTAATCTTGCTGAGGCACAAGATTATCGGGCGGAAATTAAGGTGAGCCCAATTGTGCCCATTT
TTTGGCATGGC------------------------CTGCAAGAATGAACATGAGAGTGTAATGATATGATACTGTCATTC
AACCGTGACAAGCAGACATTGCAATGC-TTTTTTTGACATTCTTCCATGAGATATTGTGAGTTCTGACAGCAAATGTCTA
TGTATATACTGGTAATAGTCTGC-TTTTTGTAGTACAACAACTTGTATCAAAGCTGGAATCTACATGAAGTGCCCTATCC
ACCT---AATTCAAGTGTCTACAATTGCGTGCGGTTTCTTGGAACTCGAAACATAAACAGATGGCCTCTAAAAGACATAA
AAGGGAAACAGCAGTAGGAATCTTTCCTTTATGAGCTAAAGCATGGTTATTCAATTCGTCTTATGCAAGCAAAAGCATAT
ACATGTGCGAGAAAGCACGTCTAGCATCATCCTTGTAGCTTAGCTCCCTGTTCTGCAAAAAAGCAATGTTAGAAGTTAGA
ATGCTCTAAATATTACACTACCATAACTTG-AGCTTTTGAAGTTTGGCACCTCATTAACCTCAATGTATAGAAGAGTTGG
CTCTTATTTCGCAGCCACACAATTGGAACCTTTCACCATATTCTTTCAGCAGTTAGGCAGTGCCTAACTCACCTGGTAAA
TTATGTGCAGAACATTCTTTAGGAGGCAAGAGAAACTAGACCTTAACCCTTATATTGCAGAAACCCAACTAGCAACCGAG
TCGGTAGGTTTTCCCTCGAATAATCCCTGCAGCTCAAGAACCAGGCCAGCTCTAACTTCACTCCCAGGGCAGGAATCAAC
CAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCATTCCAAGCTTGCATTCCCTTAGTTCTCT
GGGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAATC--TCTGTCCTCTTACCTGCACCAATAATGGG
TCTTCCCTTCAGTGCGTTAAACAAGTTAGGTAAGTTCTCAAGTCCCAGTTCTTTCTATGGTTTTGTTTTGTTCTATATGC
CGGTGCCA-------TTACATGGTTCTTGTGGCTCCGCACTGTTTTATCTGTTGCTGGAACTTCTGCTCCATATTCTAAA
TTTGTTAACTTGTGCTGTCGTTCTTCTCAGGAGTGCCAGGGTTGGGCGCAGTAACAACCGGACAAGTTTATGATCGACAT
TTTAAGGACAGGGACACGGGCACCTTTAAAGACTTTCATCTTGCATATGTCGAATTCTGCAAGTAAGCTTCC----TGTT
TGTGCAGTTATGTTGCCTGCACTTCTTGTGCC-AA-CCTTTTATGCGTGTCATCATCTGAAAACGCTGCAGGTATTTCAA
CACTGTGTTGCCTGGCCAAGATTTTGATACTCCGGACCGTGGGGAACTAGAGGTAAACCC--------------------
------------------GATTCGGTGTAAATATTTATGGACATCTGGCAATTGACTGTTACATATGGTCCAAAAACTCA
ACTGAACATGGTGCACGCGCATATTGCAGGCATTCCATAAAAAATGGGCAGTGGCGGACGAGCCTGGAAGGAAGAAGATG
TTCATCGAGTATATGCAGGAAAACGTCCACGAGGCCAAAGTTGACGACAGCCTCTTCATCATGGCCGGCCTGGCTGCGCC
AGCGGCGGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGAAGTTCAAGGTGCATCTAATCCCCAACG
TCATCTTTGTGCCGGTGTGCACGCTGGTTGCCATCATGGGTGCCACTGCAGTTCAGATGAGCAAGAAGAGCAAAGACAAC
AACAAGCCTACGAGTTGATCCCGTCTTGTTCCTGTCTGCAGTTTAAATAAGATGATGTAATAAACAAGAAACCTGGAACG
CATATTATCACCCAAATGATTGTATAAAATTATACTAAGATGCAAGTCATGGGTTAAATATATATGTTACTTTTGTTGTT
CAAATAGCCGATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACAGTTTGCTATTTTGTTTTCTTCCATATG
TGATACGCCCATTTTCTCACACTTTCTTTGGTGTTCTTTGAACATCAACAGAAATGTGATAATGTTCGGTACCTGTTGTA
AATTTGGTCCAAGTGCACAAATTTCTTGTTCAATCAAAAGTCTGTATTATCCCTCGCTTGCAAGACATTGCACTTGCAAG
TAAACCTAGATTCCTGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAACACTGCACTT-----TTAAGACCGCTAC
AAGAAAGCTAATTTTAAGTGTGGTGCAAATCAAGCATGGAATCAACAAG---ATGTTGCTTACGAAAGAACATTCACCAT
GAAAACATAGCATAAAGGCAGCTGAAATGCAAACTGAGGAGAAGTAACTTCGTCACAAGAACTTTCACAGAATGATACTT
TTATCTTACACAAGGGCCTAAAAAATTCCAAGAGAACAATCAGTACCACCACGTTCATATTTCAATGAGAGCACAAACCA
CCAGAACATCGATGCCTCTGAATTAAGCTAGCACAAGTGCTAAGCTCATGATCTGGATAACACACTTTTACCTCACAGAG
CCTGTTCTCTCTGGCAAAATATATCATAATTACAATCAAATTTAGATGAGAACACAGAGAGGAACATCTACTACGGCCTC
AAGTTTGCAACCCTAGGAGCTCAGGATATGTTGGTTGTTAGTTATCCTTGCAATAGAACAGTCACTGAGCTGTTGTTACT
TCCCCCTGAAAAACGAACATGAATAGCAAATACTAGGCAAGTATACGCCAAATAAAGCAAAAAAAA
>chr6B_116
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-----------------------------------CTGCAAGAATGAACATAA------AATGATCTGACACCGTCATTG
AACCGTGACAAGCAGACAATGCAATGCATTTTTTTGACATTCTTCCATGAGCTCTTCTGAGTTCTGACAACAAATGTCTA
TGCATATATTGGTAATAGTCTGTC-TTTTGCAGTACAACGACTTGTATCAAAACTGGAATCTGGGTAAAGTGCCTGATGG
ATCTTCTTATTCAAGTGTCTGCAATTGCGTGCTGTTTCTTGGAACTCAGAACATAAACAGATGGCCTCTAAAAGACATAA
AAGGGAAACAGCAGTAGGAATCTCTCCTTTATGAGCTAAAGCATGGTTATTCAATTCGTCTTATGCAAGCAAAAGCATAT
ACATGTGCCAGAAAGCACGTCTAGCATCATCCTTGTAGCTTAGCTCCCTGTTCTGCTAAAAAGCAATGTTAGAAGTTAGA
ATGCTCTTAAAATTACACTACCATAATTTAAAGCTTTTGAAGTTTGGCACCTTATTAATCTCAACATATAAAATAGTCGG
CTTTTATTATACAGCCACACA-------------------TTCTTTCAGCAGTTGGGCCAAGCCTAAGTCGCCTGGTAAA
TTATGTTTAGAACATTCTTTAGGAGGCAAGAGAAAATAGACCTTAACCCT--TATTGCAGGAACCCAACTAGCAGT----
------GGTTTTCCCTCGAATGATTCCTGCAGCTCAAGAGCCAGGCCAACTCTAACTTCACTCCCAGGGCAGGAATCAAC
TAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCATTCCAAGCTTGCATTCCCTTGGTTCTCT
CGGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAATCTCTCTGTCCTCTTGCTTGCACCAATAATGGG
CCTTCCCTTCAGTGCGTTAAACAAGTTAGGTAAGTTCTCAAGTCTCAGTTCTTTCTATGGTTTTGTTTTGTTCTATATGC
CGGTGCCACATGATATTACATGGTTCTTGTGGTTCCGCGCTGTTTTATTTGTTGCTTGAGCTTCTGTCCCATATTCTAAA
TTTGTTAACTCGTGCTGCTGCTCCTCTCAGGAGTGCCAGGATTGGGCGCGGTAACTACCGGACAAGTCTATGATCGACAT
TTTAAGAACAAGGATACCCGCACCTTTGAAGAATTTCATCTTGCATATGTCGACTTCTGCAAGTAAGCTACC----TGTT
TGTGCAGTTACATTGCCTGCACTTCTTGTCCC-AAACCTTTTATTCATGTCATCATCCGAAAACACTGTAGGTATTTCAA
CACTGTGTTGCCTGGCCAAGATTTTGATACTCCAGATCTTGAAGATATAAGGGTAAACCCATCATCCATCAGTTTTTCTT
TTCTTTTCGAAGGGATGTGATTCTGTGTAAATATTTAAGGACATCTAGCAATTGACTGTTACATATCACCGAAAAACTCA
ACTGAACC--GTACATGCGCATATTGCAGAGATTCCATAAAAAATGGGCAGCGGCGGACGAGCCCGGAAGGAAGAAGATG
TTCACCGAGTATATGCAGGAAAATGTCCACGAGGCCAAAGTTGACGACAGCCTCTTCATCATGGCCGGCCTGGCTGCGCC
AGCAGCGGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGAAGTTCAAGGTGCATTTAATCCCCAACG
TCGTCTTCGTGCCGCTGTGCACCCTGGTTGCCATCATGGGTGCCACTGCAGTTCAGATGAGCAAGAAGAGCAAAGACAAC
AACAAGCCTACGAGCTGATCCCGTCTTGTTCCTGTCTGCGGTTTAAATAAGATGACGTAATAAACAAGAAACCTGGAACG
CATATTATCATCCAAATGATTGTATAAAATTAAACCAAGATGCAAGTCATGGGTTAAATATATATGTTCCTTTTGTTGTT
CAAATGGCCGATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACAGTTTGCTATTTTGTTTTCTTCCATATG
TGATATGCCCATTTTCTCGCACTTTCTTTGGTGTTCTTTGAACATCAACAGAAATGTGATAATGTTCGGTACCTGTTGTA
AATTTGGTCAGAGTGCACAAATTTTTTGTTCAATCAAAACTCTGTATTATCCCTCGCTTGCAAGACACTGCACTTGCATG
TAAATCTAGATTCCCGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAACACTGCACTTGTATCGTATGACCGCTAC
AAGAAAGCTAATTTTAAGTGTGGTGCAAATCAAGCATGGAATCAACAAG---ATGTTGCTTAAGAAAGAACATTCACCGT
GAAAACATAGCATACAGGCAGCTGAAATGCAAACTGAGGAGAAGTAATTTC-TCACAAGAACTTTCACAGCATGATACTT
TTATCTTACACAAGGGCCTAAAAAATTCCAAGAGAACAATCAGTACCACCACGTTCATATCTCAATGAGAGCACAAACCA
CCAGAACATCAATGCCTCTGAATTAAGCTAGCACAAGTGTTAAGCTCACGATCTGGATAGCACACTTTTACCTCACAGAG
CCTATTCTCTCTGGCAAAATATATCATA-TTACAATCAAATTTCGATGAGAACACAGAGAGGAACATCTGTTACGGCCTC
GAGTTTGCAACCCTAGGAGCTCAGGATAAGTTGGTTGTTAGTTATCCTTGCAATAGAACAGTCACTGAGCTGTTGTTACT
TTCCCCTGAAAAGCAAACATGAATAGCAAATACTAGGTAAGTATACACCAAATAAAGCAAAAAAAA
>SNPs
SS--------S-----------------------------S------S-S-----------------S-S---S----S-
---S-------SSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
---S-----------S-S----------------------------------------------------S---------
-----------------------S--------------------------------S---S-------------------
-----------------------SS--S------------------------------------S---------------
--------------------------------------------------------------------------------
---------S------------------------S-----S------S-S---------S--------------------
---S--------S-------------------------------------------------------------------
-------------------------------------------------SS--S---SS----------S----------
-----------------------S--S-----------------S-------------------------------S---
-SS-----------------------------------------------------------------------------
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-S------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
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-------S------------------------------------------S-----------------------------
------------------------------------------------------------------------SSSS----
----------------S---------------S-------------S----S-----------S---S------------
------------------------------------------S-------------------------------------
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------------------------------------------------------------------------S-------
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------S-------------------------------------------------------------------------
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--------------------------------------S-----------------------S-----------------
---------S---------------------------------------------------SS-----------------
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--------------------S-S-------------S--------SS-SSSS------------------SSS-------
----------------------------------S------------------S--------------------------
------------S------------------S-----------------------S------------------------
-------------------------------S------------------------------------------------
-------------------S----SS-----S--------------S-----------------SS------------S-
----------S-----------------S--S-----------------------------------S------------
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>forward_50
------------------------------GGCACAAGATCATCGGGTGA------------------------------
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>reverse_1767
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------AGCCATCATCGCCAAGAAGA------------------------------------------------------
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>forward_101
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-TTTGCATGGCCTAGGTCACC-----------------------------------------------------------
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>reverse_2142
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-------------------------------------------------------------CCTTGTTTTCTTCCATATG
TGATATGC------------------------------------------------------------------------
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