>input_sequence_66998
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----------------------------------------------------------------GCTCTTCCTCTGCCCA
CCCAACAACATCAGACTCAGACCAGCAGCTCAGCTCTCAACTTTCGT----CGATGGCGAAATGCAGCAAGATCCACAAC
ATCGTCTTGCTCCGGCAGACCCTGCGACGGTGGCGCTCCCGTGCCGCGGCGCGCGCTGCTG---CGGGCGACGGCGCG--
-GTGTCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCGCGTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTGCTCCGGCGGGCGGAGGAGGAGTACGGGTTCCCGTCCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCGCGG---------------
---C------------------GTGCCGGCCGCCAACAGCCGCGACGTGGCGACGCGGCCGTTGCTTCAGAGGGTGGCGG
CGGAGGAGCTCGTGTGGTAACCGATCGATGGAAGCCACACGGATTGGCCATT---CA--------TACGTGCTCTGTTCT
CACATGAGATAGCCCTGGCGATGTGACTCCGGCGGCGGC---------------AGTGGAGGAAGCAGCAGCTGGTCTTC
CGGACGCGGAAATGGCGAAAGCATGCCGCAGCCTGGAAGACACCACCCGCCC----GTGCGCACGACAGGTGCCCGAGG-
----------TATTGAAGGACGTGGTCTGGTGCCCGGTGTAGCGGCCAGCGGCGCCCCGAAACACGAATCGGGGACGGTG
CCGCGGGTGAGCA---------------ACCGAGGCTCTGTAAGGCTTGAAAAGTT-GACTGCAGTTAGGAGAAATCTGT
A---GTGATTAGTTAAAGATGAAGATGACGGTTTTTGTGATTGTCGTAATTAATCTGTAGCATTCCT-------------
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>chr2D_1_TraesCS2D01G495400
TCATAATTTTTTTAGCATTTACATTAAGTGTTTTTTTTTTCCACTGTCATACGTTGCGTGCTGTGCATTTTTTGTTCTCA
CAATTTGCATTGTGATGTTTCTTTTACTAACCAGGACGCTATTATGATGGTTTTATGTATTTCGCTCCAAAATATGGGGT
AGTAGACCATGCCTCGTGATCCGCTTTCCCTAATCCCGACTCCGGCCAGACATGATATGTCTTTGTGGTTTGCGCGTACT
GTAGCATTTCTGTGGGGGTCCTAAAATTTACGACTACATTGTCAAACATATAAAAGAGGAAAATATGGAGCGGGGTATTT
TGGAGAATGAGCTCCATAGAGGCCTTAATTTTGAAAATTCAAACCTTTAAGTTTCAACAATTTCTAGAAAAAAGACACAT
GTAATGTGTATGTGTGTAAAATTTTAGGATGAAATACAAGCTGTACAAAAGAATCATGGACGTTGAAGATGAATTGCATG
TGAGACGTATGCTAAATTGCCAAAGATATTGTCACTTTGTGTAGCTCTTATTTTAACGTATTTCAACCTGAAAATTTACA
CATGCACAATTTGTCCGTAAGTATATGTGTATTTGTTTTCAGAACTTTGTGAAATTGAAAAGCTTGGATTTTGAAGTTTC
AAATTAAGGTCTATATGGAGCTCGGCCTCCATTTCGCATTTCGGAACATATGCGTAATTTTGATATGAATATGTAATTTA
GTGTATTGTCATCCATTTCCGAAGACATGGGGCAACATATATATAT-TTTTTGTTTGAAATCAGC----TAACCTGACGT
GCGAAAATATAAGGAAAACAGTGAGCGCTAGTGACCTTCGTTTGTGAGTATGAAGTTATTCAACTGAAAAACGTAAATAT
TTAAACACCGAAGCAT----ATGAGAAAA---------------ATGGAGTCTTTTATTCCAGGCCAACCGGATGACGGA
GCCGAGTCCCCATCGTCTTCTTCCCTCCTATAAAACCTCCTGCCCCGCCACCTACAGGAAGCCAGCTCTTCCTCTGCCCA
CCCAACAACATCAGACTCAGACCAGCAGCTCAGCTCTCAACTTTCGT----CGATGGCGAAATGCAGCAAGATCCACAAC
ATCGTCTTGCTCCGGCAGACCCTGCGACGGTGGCGCTCCCGTGCCGCGGCGCGCGCTGCTG---CGGGCGACGGCGCG--
-GTGTCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCGCGTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTGCTCCGGCGGGCGGAGGAGGAGTACGGGTTCCCGTCCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCGCGG---------------
---C------------------GTGCCGGCCGCCAACAGCCGCGACGTGGCGACGCGGCCGTTGCTTCAGAGGGTGGCGG
CGGAGGAGCTCGTGTGGTAACCGATCGATGGAAGCCACACGGATTGGCCATT---CA--------TACGTGCTCTGTTCT
CACATGAGATAGCCCTGGCGATGTGACTCCGGCGGCGGC---------------AGTGGAGGAAGCAGCAGCTGGTCTTC
CGGACGCGGAAATGGCGAAAGCATGCCGCAGCCTGGAAGACACCACCCGCCC----GTGCGCACGACAGGTGCCCGAGG-
----------TATTGAAGGACGTGGTCTGGTGCCCGGTGTAGCGGCCAGCGGCGCCCCGAAACACGAATCGGGGACGGTG
CCGCGGGTGAGCA---------------ACCGAGGCTCTGTAAGGCTTGAAAAGTT-GACTGCAGTTAGGAGAAATCTGT
A---GTGATTAGTTAAAGATGAAGATGACGGTTTTTGTGATTGTCGTAATTAATCTGTAGCATTCCTTGCCGGTAATGAT
AAAGAATTGCTCTACTCCATGTTGCACATTCACTTTGTCGTTGTTTGTCATGTGTTTCAACTCAGTGGT-----------
----------------------------------CTGTTTTGCAAACTCTCCATCGACTAAAAACTTTCTTATTCATGTG
CAAGATTTCCAGCTTTGGAAACTCCCAGGTCACATGTAAG----------------------------------------
---------------------------------TTTAAAACGTAAGTTTCTCTCAAAC-AATATGTCAATTTAATCTGAA
ATTTAACCAGGTAGGCCACTAAATTAATTTTTATTAGTGATATTCTCGTATTTACATGTGCCAATTAAATTCTAA-----
------------------------------------------------------------------------------TT
TTTTAAGTGTAGAGAGAAAAGAGGCTACGTAA---AGATGAGAGAAAAAC-ATGATGTTGCTAATTAAGACAAAACTGAA
ATATGTCAAAGAACGATTAAACGAGACAAAGAAATGTTTCAAGAGTTAACTAT---------------------------
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-------------------------------------------AAACTAAAACAAATGAAATATTTCTATATTAGGGTTA
T---GAAGTGAATGAGCCGACAATTAAGGCGGGGAACGTGGAGTTCTTTGGCAAAGTACCATATCCGCCATATCATTCGC
ACCATCATG-----CATGGATTTCAACAA-----------------------------TTACATCTTAGAGCAACTCTAG
CAAAGT-------------CAATCACCATAATAACCGTCAAT-ATGGCAATCGCGACCGCAAAGGGCACTCTAGCAGAGT
CTGCCATCTTGTGCCAAATCATCATGATTTTTG-AAGCGTCCTCCATATTTTGGCATCTT-TGAGCTGCTGTTTGGAGTG
CTCTCCAACCATGGCGCGAAGGAAACTTTAGACCGTCCCCCACCTCTCATCCCCCTCCCCTCTACCA----CGTACCAAA
ATTGGCACACCACTATCAAAATATCTGCCGGGCCTCCTGGAATTAGCACCCCATCACCAAAATAGACATCTAACCGTTAA
AATCGCTGCCCTGCGTCCACCAACACCG-------ACGAGACTAGGAAGGGCGTCTCAATGGTGCACTGGCTCATGGAAG
TGACTGATGGCGGAGTGTCAGCCACGACTCTCTCACCAATTTTCACA
>chr2D_683
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------------------------------------------GGAAAACATGTTTAGTTTTTATAGGAATATGTACTTAA
GTGTATTATGGTCCATTTCCGACGACATGGAGCGGCTTTTAGAATTGTTTTTGTTTCAAATCAGCTAATTAACCTGACAT
GCGAAAATGCAAGGAAAACAATGAGCACTAGTGACCTTTGTTTGTGAGTATAAATTGTTTCAACTGAAAAATGTAAATAT
TTAAACACCGAAGCATGCATATGAGCAAAATGAAAAATGTAAGAATGAGGTCCTTTATACCAGGCCAACCGAACGACGGA
GGCAAGTCCCGATCGTCTTCTTCCCTCCTATAAAACCTCCTCCCCCGCCACCTACAGGAAGCCAGCTCTTCCTCTGCCCA
CCCAACAACCACAGACTCAGACCAGCAGCTCAGCTCTCAACTGCCGT----CGATGGCGAAATGCAGCAAGATCCACAAC
ATCGTCTTGCTCCGGCAGACCCTGCAGCGGTGGCGGTCCCGTGCCGCGGCGCGCGCTGCTA---CGGGTGACAGCATG--
-GTGTCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCGCGTCGCGGCGGTTCGTCGTGCGGGCGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCCCTCCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCTCGG---------------
---C------------------GTGGCGGCCGTCAGCAGCTGCGACATCGCGACGCGGCCGTTGCTGCAGAGGATGGCGG
CGGAGGAGCTCGTGTGGTGACCGGTCGATGGAAACAACACGCATAAGCCATTCGGCA--------TACGTGCTCTGTTCT
CACATAAGGTAGCCCTGGCGATTTGACTCCGGCGACGGC---------------AGCCGTGGCATCAGCAAGTGGTCTTC
CGTACGCGGAAATGGCGAAATCATGTCGCCGCTGGGAAGACTCCGCCCGCCCACCGGCGCGCACGGCAAGCGCCCGAGGA
CCGAATGTCTTATTGACGGACGTTGTCCGGTGTCCGGTGTAGCCGTCAGCGGCGCCCCGAAACACGAATCGGGGACGGTG
CCGCGCGTGAGCA---------------ACCGAGCCTCTGTACGACTTGAAAAGTTAGACTGTAGTTAGAAGAAATTTGT
A---GTGATTAGTTCAAGATGAAGATGACGAATTTTGTGATTGTCGTAATTAATCGATTGCATTCCTTGCCGCTAAT---
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>chr2B_734
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-------------CATTTCCAAAGACATGGAGCAACTTTTAGAATTGTTTTTGTTTCAAGTCAGC----TAACCTGACAT
GCGAAAAG-TAAGGACAACAGTCACCGCTAGCGACCTTCGTTTGTGAGTAGAAAGTGTTTCAACTGAAAAATGTAAACAC
CG------------AAGCATATGAGAAAATGGAAAATTTA---AATGAAGTCTTTTATTCCAGGCCAACCAGACAACGGA
GGCAAGTCCCCATCGTCTTC--CCCTCCTATAAAACCTCCT-CCCTGCCACCTACAGGAAGCCAGCTCTTCCTCTACCCA
CCCAACAACATCAGACTCAGACCAGCAGCTCAGCTCTCAACTGTCGT----CGATGGCGAAATGCAGCAAGATCCACAAC
ATCGTCTTGCTCCGGCAGACCCTGCGCCGATGGCGGTCCCGTGCCGCGGCGCGCGCCGCTG---CGGATGACCGCGCG--
-GTGTCGGTGCCAGCGGGGCACGTGGCGGTGTGCGTGGGCAGCGCGTCGCGGCGGTTCGTGGTGCGCACGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTACTCCGGCAGGCGGAGGAAGAGTACGGGTTCCCATCCGGCGCTTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGCCGTCCTCCGCCGCGTGTCCTCCGAGGAGCGCCTCGG---------------
---C------------------GTGGCGGCCGTCATCAGCCGCGACGTGGCGACACGGCCGTTGCTGCAGAGGGTGTCGG
CAGAGGAGGTCGTGTGGTGACCGATCGATGGAAGCAACACGCATAGGCCATTCGGCA--------TACGTGCTCTGTTCG
CAGGCAAGCTAGCCCTGGCGATTTAACTCCGGCGGCGGCGACGGCGGCGGCGGCAGCGGTGGCAGCAGCAACTGGTATTC
CGAACGCGGAAATGGCGAAAGCGTGCCGCGGCCGGGAAGACTCCGCCCGCTCAACCGCGCGCACGGCAAGCGCCCGATGC
TCGAATATCTTATTGAAGGACGTGGCCCGGTGCCCGGTGTAGCGGCCAG--------------------CGGGGACGGTG
CCGCGCGTGAGCA---------------ACCGAGGCTCTGTAAGACTTGAAAAGTT-GACTGTAGTTAGAAGAAATTTGT
A---GTGATTATTTCAAGATGAAGATGACGATTTTTGTGATTGTCGTAATTAAT-GGTAGCATTCCTAGCCGGTAATGAT
AAAGAATTGCTC-----CATGTTGCACATTCACTTTGTTGTTGTTTATCATGTGTTTCAACTCAG---------------
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>chr2D_955
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------------------TCTTCCCTCCTATAAAACC-CCTACCCCGACACCTACAGGAAGCCAGCTCTTCCTCTGCCCA
CCCAACAACATCAGACTCAGACCAGCAGCTCAACTCTCAACTTTCGT----CGATGGCGAAATGCAGCAAGATCCACAAC
ATCGTCTTGCTCAGGCAGACCCTGCGGCGGTGGCGCTCCCGTGCCGCGGCGCGCGCCGCTG---CGGATGACCGCGCG--
-GTGTCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCAGCTCGTCTCGGCGTTTCGTGGTGCGCGCGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTGCTCCGGCAGGCGGAGGAAGAGTACGGGTTCCCGTCCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCGCGG---------------
---C------------------GTGCTGGCCGTCAGCAGCCGCGACGTCGCGACGCGGCCGTTGCTGCAGAGGGTGGCGG
CGGAGGAGCTCGTGTGGTGACTGGTGACC--GATCGATGGGCATAGGCCATTCGGCA--------TACGTGCTCTGTTCT
CACGTGAGGTAGCCCTGGCGATTTGACTCCGGCGGCGGC---------------AGCAGCAAGC-CAGCAACTGGTCTTC
CGGACGCAGAAATGGCGAAAGCATGCCGCGGCAGGGAAGACTCCGCCCGCCCAC--------------ACCGCCGGAGGC
CCGAATATCTTATTGACGGACGTGGTC----------------------CGGCGCCCCGAAACACGAACCGGTGACGGTG
CCGCGCGTGTGAGCAACGGAGGCTCTGTAC-------------GGCTTGACAAGTT-GACTGTAGTTAGAAGAAATTTGT
A---GCGATTAGTTCAAGATGAAGATGAAGATTTTTGTGATTGTCGTAATTAATCGGTAGCATTCCTTGCCGGTGATGAT
GAAGAATTGCTC-----CGTGTTGCACATTCACTTTCTAATTGTCTGTCATGTGCTTCAACTCATTGGTGTTGGCTCTCC
ATGGGTGTCATTAGCTGTTGCATTAATGTATTATCTGTTTTCCTATCTCTCCATCGACTTAGAAGTTTCTTATTTATGTG
CAAGATTGACAGCTTTGTAAACTCCGAGATCACATGTTACTTATACGGTTTGTGGGGGAGGCCAAAGCTTTGCCACATCG
ATTAATTATGAAGAAGAGAATTTTTGCGTTCTATTTAAAACATAAGTTTCTCTCAAATGAATATATCAGTTTAAGCTGAA
ATTTAACCTGGCTGGCCACTAAATTCATTTTCATTCGTGATATTTTTGTAGTTTCACATGCGACTTAAAATCTACTCGGA
CCATAACAAAATGTAAGACGTTTTTATGCTCTATGCAAAACCAAAAACGTCTTACATTATGGTATAGAGGTAGTATTGTT
TTTCTAGTGTAGAGTGAAAAGAGGCTACGTGGCAGAGAGGAGAGAGAAAATATGATGTTGGTAATTAAGACAAAACTGAA
GCATGTCAAAGAACGATTAAATGAGAAAAGGTAATGTTTTAAGAGTTAACTACTCCCTCTGTAAACTAATATAAGAGCGT
TTAAATCAC----------------------------TATTTTAGTATTCTAAACGCTCTTATATTAGTTTACGAAGGGA
GTGGAG--------------------------------------------------------------------------
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---------------------------------------------ACTAAAACAAATCAAGTATTCCTATATTATGGTTA
TTATGAGGTGAATAGACCG--ACTTACGGCGGGGAATCTGAAGTTCTCTCGCAAAGTACCATATCTCCCATATCCTTCGC
ACCGTACCACTGTACATGGCTTCCAACAA-----------------------------TTACATCTTAGAGCAACTCTAG
CCGAGTAAACGTAAGTGCCCAATCAGCATAATAACCGTCAAT-ATGACAATCGTGACCAAAAATGGCACT-------AGT
CG-ACATATCATGCCACATCATCTTAATTTTTG-AAGCATCCTCCATATTTGGCG-TCTTTTGAGACGTCATTTGGAGTG
CACTCTAACCATGGTGCGAAGCAAACTTTAGACCGTCTCCCACTTCTCATTCCCCTCCCCTCTACCTCCTGCGTGCCGAA
ATTTGCACCCCACCGTCGAAACTGCTGTCTGGCCTCTCGGAATTGGCACCCCATCGTCCAAATAGACAGCCCACCGTCAG
AATCACTGCCC-GCGTCTACCAACGCGATGAGACTAGGAAAGTAGGAAGGGTGCCTCGGTGCAGTACTGGCTCAAGGACG
TGACCGGGGACGGAGCGTCCGCCACGGCTCTCTC-------------
>chr2A_966
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-----------------------------ATAAAACATCCTGCCCCGCCACGTACAAGAAGCCATCTCTTCGTCTGCCCA
CCCAACAACATCAGACTCAGACCAGCAGCTCAGCTCTCAACTGCCGT----CGATGGCGAAATGCAGCAACATCCACAAC
ACCGTCTTGCTCCGGCAGACCCTGCGGCGCTGGCGGTCCCGTGCCGCGGCGCGCGCTGCTG---CGGATGACGGCGCG--
-GTGTCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCGTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTGCTCCGGCAGGCGGAGGAGGAATATGGGTTCCCGTCCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCACTTCCGGGACGTCCTACGCCGCCTCTCCTCCGACGAGCGCCGCGG---------------
---C------------------GTGTCAGCCGTCAGCAGCCGCGATGTCGCCACGCGGCCGTTGCTGCCGAGGGTGGCGG
CGGAGGAGCTCGTGTGGTGACTGCTGACGGAT--CAATGGGCATAGGCCATTCGGCA--------TACGTGCTCTGTTCT
CACATGAGGTAGTCCTGGCGATTTGACTCCGGCGGCGGC---------------AGCGGTGGCAGCAGCAACTGG-----
------------------------------------AAGACTCCGCCCGCCCACCGGCGTGCACGGCAAGCGCCGGAGGC
CCGCATATCTTATTGACGGACGTGGTCCGGTGCCTGGTGTAGCGGCCAGCGGCGCCCCGAAACACGAGCCGGTGACGGTG
CCGCGCGTGAGCA---------------AC-------------GGCTTGACAAGTT-GACTGTAGTTAGAAGAAATTTGT
A---GTGATTAGTTCAAGATAAATATGACGATTTTTGTGATTGTTGTAATTAATCGGTTGCATTCCTTGCCGGTAATGGT
AAAGAATTGCTAATGTCTTGGCTCTCCATGGA----------------------------------------------CC
ATGGGTGTCATTAGCTGTTGCATTA--------TCTGTTTTGCTAACTATCCATCGACTAAGAACTTTCTGTTTAATGTG
CGAGATTCACCGCTTTATAAACTCCGAGATCACATGTTAAGGATAACCGCGGCCGAGAT---------------------
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--------------------------CAATGTAATGTTTTAAGAGTTTTTTTTCGAAAATAAAGATAACCCAGCCTTCGC
ATCGAAAGATGCACACAGCCATTTTATTATTTTGTTTTATTTTAGTTTTGCGGAATTTTTTCGATCTATTCATCTTCAAT
CATGGCAGGCGCGCCACCGTCATCGCCCCTCCCTCGTTAGAGCCGAGCAAAACTTGTTGTAGTAGACAGTTGGTAAGTCG
TCGTGCTAAGGCATCGTAGGACCAACACACTAGAATAGCAATCGCCGCCGATAAAGAGTAGCGTGGATCGGAAGGATCCA
ATCTAAAGACACACGAACGATGACCAGATCCACCGGAGACACGCCTTCACACGCCTACTGACGATGCTATATGCACCACC
AGAGAGGGGTCTAGGCAGTGAAGACTTTATTCCATCTTCAGGGAGACACCGCCGTCTCGCCTTTCTAAGCATGGCACGAT
CCCAAAACTCAAAGAGAGATCTAAAACAGAGCCCCCCGCCGGCAAGAGCCAGAATCCACTGCACCCTCATGGCCCTAAGG
CTACTGGAGACGAGGTGGACCGGCTGCAACACCAGAGGGAGGCGGGGGAACCCTAAGCTTTTTAGGGGAGAGGAGCCAGA
GGTGGCGGCGGCTGTGTCGATCCTTTGGCTAGCTAGCCATTTTATTAACTTATTTAATACTCCCCCCGTTCCATAATGTA
GTGCCTATAGATTTTTGCAAAAGTCAAACATTACAAATTTTGACCATGTTTATAGAGAAAAGTAGGTAAATCTAGAATAC
CAAATGCACATCATTGGATACATCGTGAGTTATATTTTCAGAATATACATGTTTGGTATTATAGATGTAGATAGTTTTCT
CTATACACTTGGTCAAAGTTGACAAAGTTTGACTTTCACAAAAATCTATAGGCACTACACTATGAAATGGAGGGAGTAGA
ACCCAACAAAACAAATGTATGAATTAATCCAAAATTTGTCTTTCTTGCAACTACTGTTGCTATACCTACATCCCGATGAT
GTGTTATGACCTCGCATCAATACACACCATCTAATATGGTGGTCTCACCAAGCCGCCCACCGGCAAGCCTAAGGTGCCAA
CTGGTCTAGCAGACCCTCATCGAGCACCACATACACATACTCCAAAATCCGGCGCCGCCATCTTCCGCCCTCCCAACTTC
AGGAGAGATCAACGTATCGACCTTGCCAGGCTCAACTGTCGTCGACGTCACCACGACGCCAAACAACGTAACCACCCTGC
ACGTGTCCATCAGCACACATCCAACATCAAGACACTGCAACGCCATGCCGTCGTCGACGCGGTAGATGCCACACCGCACC
ACCTCCAGATCCAGATCGTCAGCAGCAACCCAACGGTGTCCCCCGGCTACAGAGCTCCTAAGGTGCCACCTTCAAGAAGG
GAACGACGTCGAGGGCACCGCTGATGTTTTAAGAATTAGCTAAAAATTAAAACAAAACAGATATTTCTATATTACGGTTA
T---GAAGTGAATAGGCCGATAGTTATGGC-GGTAACATGGAGTTCTCTCGCAAAGTACCATATCTCCCATATCCTTTGC
ACCACCATG-----CATGGATTCCAACAAATTTTTTTGAGCATGTGGATTCCAACAAATTACATCTTAGAGAAACGGTAG
CACAGTCAACGTAAGTGCCCAATCACCATAATAACGGTCAAACATGACAATCGCTACCAAAAAGGGCACTCTAGGAGAGT
CA-CCATCTCGGGCCACATCATCATAATTCTTGAAAGCGTCCTTCATATTTGGCG-TCTC-TGAGCTGTCGTTTGGAGCG
CATTCCAACCATGGCGTGAAGGAAACTTTAGACCGTCTCCCACCTCTCATTCCCCTTCTCTCTATCTCGCTCATACCAAA
ATTCGAACTCCACTGTCGAAATCGCCGCCTGG-CTCCCGGAATTGGCACCCCACCGCTGAAATAGACATCCACCTACAAG
AATCATTGCCCTGCGTCCACCAACACCG-------ACGAGACTAGGAAAGGCGTCTCGGTGCAGCATTGGCTCATGGACG
TAACCAGGGGCGAAGCATCTGCTTCGGCTCTCTTACCGATTTTC---
>chr2D_1037
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--------------------ACCAGAAGCTCGCCCCTCAACCTCCCATCCC--ATGGCGAAATGCAGCAAGATCCGCGAC
ATCGTCTGGCTCCGGCAGACCCTGCGGAGGTGGCGGTCCCGCGCCGCGGCGCGCGTGGCCGCCGAGGGCGG---------
CGTGACGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCCTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTCTTCCTCGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCGGACCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGACCGCCGAGGCCGTTCGTTCGGCTG
CCCC------------------GCGCCGGCTGCCAGCGGCCGAGACCTCGCGACGCGGCCGTTGCTGCAGCGGGCGGCGG
CGGAGGAGCTCGTGTGGTGACGGATCGATGGAAGCAACTCGCATTGGCCATTCGGTG--------TGCGTGCTCTGTTCT
CA------------------------------------------------------------------------------
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>chr2A_1039
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----------------------CAGAAGCTCTGCTCTCAAGTCTCAACTGCCGATGGCCAAATGCAGCAAGATCCGCGAC
ATCGTCTGGCTCCGGCAGACCCTGCGGAGGTGGCGGTCCCGCGCCGCGGCGCGCGTGGCCG---AGGGCGGCG-------
-----CGGTGCCGGCAGGGCACGTGGCGGTGTGCGTGGGCGGGGCCTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTCTTCCTCGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGCTTCCGGACCGGCGCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCGCGGCCGTTCCTTCGGCTG
CCGC------------------GCGCCGGCCGCCAGCGGGCGAGACATCGCGGCGCGGCCGTTGCTGCAGCGGGCGGCGG
CGGAGGAGCTCGTGTGGTGACGGATCGATGGAAGGAACACGCATAGGCCATTCGGTG--------TACGTGCTCTGTTCG
CAGGCGAGCTAGCGGTGGCGA-----------------------------------------------------------
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>chr2B_1066
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-----------------------------------------------------ATGGCGAAATGCAGCAAGATCCGCGAC
ATCGTGTGGCTCCGGCAGACCCTGCGAAGGTGGCGGTCCCGCGCCGCGGCGCGCGTGGCCG---AGGGCGGCGCGGCGCC
CGTGACGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCCTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGA
ACCACCCCGTCTTCCTCGAGCTGCTCCGGCAGGCGGAGGAGGAATACGGCTTCCGGACCGGCTCGTGCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCCGAGGAGCGCCGCGG---------------
---CCGTTCGTTCGGCTGCCGCGCCCCGGCCGCCAGCAGCCGAGACGTCGCGACGCGGCCGCTGCTGCAGCGGGCGGCGG
CGGAGGAGCTCGTCTGGTGACGGACCGATGGGAGCAATACGCATAGCCCATTCGGTG--------TACGTGCTCTGCTCT
CAGGCAAGCTAGCCGTGGCGATTTG-------------------------------CGGCGCCAACGGCGACTGGTCTTC
CGGACGTGGGAATGGCACAAGCATGCCGCGGCCGAGAAGACTGCGCCCGCCC----G-----------------------
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>chr2B_1145
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----------------------------------------------------GCGCCGCTG---CGGATGACCGCGCG--
-GTGTCGGTGCCAGCGGGGCACGTGGCGGTGTGCGTGGGCAGCGCGTCGCGGCGGTTCGTGGTGCGCACGGCGCACCTGA
ACCACCCCGTGTTCCGGGAGCTACTCCGGCAGGCGGAGGAAGAGTACGGGTTCCCATCCGGCGCTTCCGGCCCCATCGCG
CTCCCCTGCGACGAGGACCGCTTCTGGGCCGTCCTCCGCCGCGTGTCCGCCGAGGAGCGCCGCGG---------------
---C------------------GTGCCGGCCGTCAGCAGCAGCGACGTCGCGGCGCGGCCGTTGCTGCCGAGGGTGGCAG
CGGAGGAGCTCGTGTGGTGACCGATCGATGGAAGCAACAAGCATAGGCCATTCGGCATACGTGGCTACGTGCTCTGTTCT
CACATGAGGTAGCCCTGGCGATTTGACTCCGGCGGCGGC---------------AGCGGTGGCAGCAGCAACTGGTCTTC
CGTACGCGGAAATGGCGAAATCATGTCGCCGCAGGGAAGACTCCGCCCGCCCAGCCGCGCACACGGCAACCGCCGGAGGC
CCGAATATCTTATTGACGGACGTGGTCCGGTGCCCGGTGTAGCGGCCAGCGGCGCCCCGAAACACGAATCGGGGACGGTG
CCGCGCGTGAGCA---------------ACCGAGGCTCTGTACGACTTGGAAAGTT-GATTGTAGTTAGAAGAAATTTTT
AGTAGTGATTAGTTCAAGATGAAGATGACGATTTTTGTGATTGTCCTAATTAATCTGTAGCATTCCTTGCCGGTAATGAT
AAAGAATTGCTC-----CATGTTGCACATTCACTTTCTAATTGTCTGTCATGTGTTTCAACT------------------
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-----------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S---SS--S----S---S---------S--S-
-------S-SS-------------------S-----S-S--S-SS-----------S---------------------S-
--------S------------------------------------------S----SS-------------S--------
-----------------------------------------------S-------------------------S------
-S-S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S------------------------------S-------------
------------------S----------------S-----S--------------------------------------
--------S-------------S---------------------------------S--S--S-------S---------
-----------------------------S---S-------S--S------------S-------S--S-S---------
---------------------------S----------------------------------------------------
-----S--------------------------------------------------------S------S------S---
--------------S---------------S-------------------------------------------------
------------SSS-----------------------S-----------------------------------------
-------------------------------------------S-----------------S------------S-----
-------SS--------S-------S--S--------S-S----------------------------------------
-----------------------------------------S---------------S------S---S-----S-----
--------S--SS------------S-----S---S--------S-S---S--S--SS---S-S-----S----S-----
--------------------------------------------------------------------------------
---SS---------S---------------SS------S------S---S----------S-------------------
SS-------------------S-------S-S-------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------S-----
-------------SS-----S-S---S----------S---------S-S---------------SS-------S-----
----------------------S---------------------------------------------------------
--S-------------------------------------------S-----------SS--------------S-----
-SS------S------S--------S-------------------------S-SSS------------SS----------
-S-----------------------------------S------------S---------------S-------------
---S----S-----S--S----SS-----S-------S------S----------S--S-----------S------S-S
----S----------------------------------------------------SS--SS---------------S-
----S-SS-------S---S------S----------S------SSS
>forward_241
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTGTGGTTTGCGCGTACT
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_1539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AACCGATCGATGGAAGCCAC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_682
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CGGCCTCCATTTCGCATTTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_4299
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GCAAAGGGCACTCTAGCAGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
