>input_sequence_66997
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----------------------------------------ATGGCTAACAGCCTTTCGACTAATCTCACTGGTTGTCACT
TATTCTTCCAGGTAAAACTATTTTAGGCCAGACTCTTTAGATAAATTAAGTGCTACCATATAATGAGT------------
-----TGTTTTCCAATTCATCATTTTC---GCAGATTTTTGTGCTTGACAACGTTGACCTTGGCATTTTCAATAAACCGC
ATAATGTGCTTCCAAGGATCGCCGATTTCGACCCTGATTCACTCCGTAAAATGCTCACCATGGCTCTTGACCCCGTCAAG
GGAGCTACGTCGTATTCACATGCCAATGTAATTTCTATGTAGATTTACTGTCATATCTTTTATAAAATCATGCTGTCTCT
GAGCGTCCTCTATCTAACCTGGGTTGTTTTGACATGTTTCCTCATTTTTCTGGGGCGTTTCCATTGCGTTCTCGTGTGAC
AGCTAAGAGACGCGTCAACGGTGTGTTACATGCGTTCTAAGGTACAAGTGAATGCCCCGTCATCATCAACCAGCAAGAGG
GTGCATAGGTGTGCAAAGACACCGGTTGCAGTGTCCATGGTTAACACCACAACTCCTGTTCATGTCTATACAAGTCATGC
ATGCAACGACAGCGCCGCACACTCCAACAAGGCTGCACCTGGGCCACTAGAATTTGCACACTACTTACGGGAGAAGTACC
CGCATCTCGTATGTGAAGTCTTTTTTTCTCTTTCTTATGACCCATTTTATTGTTCATTCTGCTTGCATATCAGATGCTAA
CATTTTTTTTGTCCTCCCCCGCATGGATGCCAGGTAGCCGATGAGTTAACGATGATGCTAAAACATCAGAATTCAAGGAT
GATAATGCAGTTGACACAGGCTGGCAACTCCATATAG-------------------------------------------
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>chr2A_1_TraesCS2A01G420400
GCGAACATGTGCTTCTGAATGCAGTAGATGCGTCATCTTCTAGCACAAGCCCAGGAGATCCACCGTCTCCGACCTCACAC
ATATCTGTGAAGCACGCAGTTAGCGTCATTCAGACATTCAGTGAGTACAAGAAGTGGTTAGTGGAGCAGATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGTGCTGAAGTTGCCAGATTTGCAGAAGCTTAGCCTCAAATGTAGCTCTTGGATAATGAGCAGGGTTA
GCGTCAGCCGTAGGGAGATTAAACTTAGAGAGAACAAGGTGCTCAAGTTCTGGCCGGAGGATGTTTACAAGGTGTTTGGC
ATCCCATGCGGCCATCGAAATGTCAAAGGCAGGGATGCCAATATCAATCCAGAAGCTGTCGATTTTATAAAGACAACACT
TCAGATGAACAAGACTGGGGTTCATAGCCTGCGGGCAGCTGAAGATTTCTTGTTGCGCGACATCAACGACAACTCCAGTA
AGCTGGAAAAGGATTGCTTCTAGATTGCGTTTGTCATTTTTGTGATGGGACATGTCCTTGTGCCAACCACGAAGCACAAC
TACACGACTATTGATTATTGGGGGGCGATTGCGAACATTGAAGCTATAGATTAGTTCAATTGGTGTGAGTTTCTCCTTCA
GCATCTTCTTCGTGCTGTTAGAAAGCTGAAGACGGACACGATGGCTAACAGCCTTTCGACTAATCTCACTGGTTGTCACT
TATTCTTCCAGGTAAAACTATTTTAGGCCAGACTCTTTAGATAAATTAAGTGCTACCATATAATGAGT------------
-----TGTTTTCCAATTCATCATTTTC---GCAGATTTTTGTGCTTGACAACGTTGACCTTGGCATTTTCAATAAACCGC
ATAATGTGCTTCCAAGGATCGCCGATTTCGACCCTGATTCACTCCGTAAAATGCTCACCATGGCTCTTGACCCCGTCAAG
GGAGCTACGTCGTATTCACATGCCAATGTAATTTCTATGTAGATTTACTGTCATATCTTTTATAAAATCATGCTGTCTCT
GAGCGTCCTCTATCTAACCTGGGTTGTTTTGACATGTTTCCTCATTTTTCTGGGGCGTTTCCATTGCGTTCTCGTGTGAC
AGCTAAGAGACGCGTCAACGGTGTGTTACATGCGTTCTAAGGTACAAGTGAATGCCCCGTCATCATCAACCAGCAAGAGG
GTGCATAGGTGTGCAAAGACACCGGTTGCAGTGTCCATGGTTAACACCACAACTCCTGTTCATGTCTATACAAGTCATGC
ATGCAACGACAGCGCCGCACACTCCAACAAGGCTGCACCTGGGCCACTAGAATTTGCACACTACTTACGGGAGAAGTACC
CGCATCTCGTATGTGAAGTCTTTTTTTCTCTTTCTTATGACCCATTTTATTGTTCATTCTGCTTGCATATCAGATGCTAA
CATTTTTTTTGTCCTCCCCCGCATGGATGCCAGGTAGCCGATGAGTTAACGATGATGCTAAAACATCAGAATTCAAGGAT
GATAATGCAGTTGACACAGGCTGGCAACTCCATATAGCATGCGTTGTCTCAGGCTCGTGCAGCTTTGCAAATGGACATGT
ACAAATTTTCAGATCAAGTCATCACCTCGGCTACTAGGCGGTGTGTATGTTGTGCTGCACGTGGTTTTACAGATTGTCCT
GCGTCAGGTAGTAGAACTATCGCTTTCATCTTCTCTCCTCAAACAAAATAAACCAGACATGAAAATCACATAAATGGCAC
GACCTGCCTATCACGCTTGAATTGTGCAGTTCCTACGAATTCAAAGGCAGTGCGATTCACCACACCTGCTGCTCAGAAAA
TAAAAGGGCAAAGGCTTGACTTATCTGACTGTGAAGGTTAGTTCGTCCAACAAGCTTCTTTTCAGCTCACGTTTTCTGAA
ATTTATTTTTTGTTCACCTTACACAGAAAACAAATGGTAACACACAATGTTTTCCATCCTTGGTTAGGTACATCAACGGC
ACCGCTAGGAGGGGCTTCTCGGAAGCGTGCCTTATGCGCCGAGGACTCTACATCTAGTACCAAGAAATCAAACTCAGGGG
CATCTTGCAACATTCTTACTTATTTCAAGTCAACTATAGTATCAGTTGCTCAAAAGTATGCTGACCTGTCAAATAACCCA
AATGTCAATGTCTTTGGTCAATGTCGAAACACCCCTCAAAAACGGAAGTATATATTCTAGCATGGGTTTGCAATTGACCC
ATGGACAAAGGGAGTTGTCCCACCACCTCCTCATCCACCGACGACCGACCATATTGCCGCACACTTCACAAATCTGTCTG
TCAAGGAGCTGAACAAGTTCGTTGCTATTTTTTTATGTACACGAGCCACTTCTTATTACTAAATGGACAATAGCATGTCC
CTAGTTTTTTAGCCCCGCTCCTGTCATGGCTTAACCACTTTGTTATTTTTCCATGTAGCTACTACATTGTACATGACAAT
CCAAGGCTAATTCGTATCTATGGGATGGCTATGAGGCAGCAGCTACTCGAGGGCCGAGCGCTTGACCATGAACTCGT
>chr2A_495
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--------------TGCTGAAGCTGCCAGCACTGCAGAAGCTTAGTCTGAAGGTGAGCGCGTGGATTATGAGCACAGTTA
GCGTCAGCCGCAGGGAGATTAAATTGGGGGACAACAAGGTTCTTAAGTTTTACCCAGAGGATTTCTACAAGGTTTTTGGG
ATTCCATGCGGCCACCGTAGTGTGAAGGGGAGGGATGCAAACAAAAATCCTGAGGTTGTTCATTTTATAAAGACAACACT
TCAGATGAACAAAACTGGAGTACACAGCTTGAGGGCAGCTGAAGATTTCCTGATGCATGACATCAATGAGAATTCAAGCA
AACTAGAGAAATATTGTTTCGAGATCGCATTTGTAATCTTCGTTATGGGTCATGTGCTAGTTCCAACCATGAAGCACAAC
TACACGACCATTGACTTTTGGGGAGCCATAGCGAACACTGAATCAATCTATCAATTTAATTGGTGTGAGTATGTCCTTCA
GCACCTTCTCGATGCAGTCAAGAAGCTTAAGAAAGACATGATGGCCAACAATTTATCGACCAACCTAACTGGTTGTCATC
TTTTTT-CAGGCAAGTTCATTTTTTAG-TTTTTTGCAAATGTTGTAGGTATGTTTCATTTTGCAAGCATTCTTGTATTGA
TATGGTGTCTGCCAACATCGTCGTGGTTTTGCAGGTATTTTTGCTTGACAACCTTGATCTTGGCATTTTAAACAAGTCGC
ACAGTGTGCTCCCTAGGATATCAGAATTTGACCCCGAGTCCTTCCGTCGAATGCTCACCATGGCTGCTGACCCGGTTAAA
GGAACGACCTCCTATGCGCATGCCAATGTAA-------------------------------------------------
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>chr7A_495
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--------------TGCTGAAGCTGCCAGCACTACAGAAGCTGAGTCTGAAGACGAGCGCGTGGATTATGAGCAGAGTTA
GCGTCAGCCGCAGGGAGATTAAATTGAGGGACAACAAGGTTCTTAAGTTTTACCCACAGGATTTCTACAAGGTTTTTGGG
ATCCCATGCGGCCACCGTAGTGTCAAGGGGAGGGATGCAAACATCAATCCTGAGGCTGTTCATTTTATAAAGACAACACT
TCAGATGAACAAAACTGGAGTACACAGCTTGAGGGCAGCTGGAGATTTTCTGATGCGTGACATCAATGAGAATTCAAGCA
AACTAGAGAAAGATTGTTTCCAGATCGCATTTGTGATATTCGTTATGGGTCATGTGCTAGTTCCAACCACGAAGCACAAC
TACACGACCATTGACTTTTGGGGAGCCATAGCAAACATTGAATCAATCGATCAATTTAACTGGTGTGAGTATGTCCTTCA
GCACCTTCTCGATGCAGTGAAGAAGCTTAAGAGAGACATGATGGCCAACAATCTATCGACCAACCTAACTGGTTGTCATC
TTTTTTTCAGGCAA------------------------------------------------------------------
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>chr4A_495
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--------------TGCTGAAGCTGCCAGCACTACAGAAGCTGAGTCTGAAGACGAGCGCGTGGATTATGAGCAGAGTTA
GCATCAGCCGCAGGGAGATTAAATTGAGGGACAACAAGGTTCTTAAGTTTTACCCACAGGATTTCTACAAGGTTTTCGGG
ATACCATGTGGCCACCGTAGTGTGAAGGGGAGGGATGCAAACATCAATCCTGAGGCTGTTCATTTTATAAAGACAACACT
TCAGATGAACAAAACAGGAGTACACAGCTTGAGGGCAGCTGAAGATTTTTTGATGCATGACATCAATGAGAATTCAAGCA
AACTAGAGAAAGATTGTTTCCAGATCGCATTTGTGATATTCGTTATGGGTCATGTGCTAGTTCCAACCACGAAGCACAAC
TACACGACCATTGACTTTTGGGGAGCCATAGCAAACACTGAATCAATCGATCAATTTAACTGGTGTGAGTATGTCCTTCA
GCACCTTCTCGATGCAGTTAAGAAGCTTAAGAGAGACATGTTGGCCAATAATTTATCGACCAACCTAACTGGTTGTCATC
TTTTTTTCAAGCAAGTTCATTTTGTCATTTTTTTGTAATTGTTGTAGGTCTGTTTTATTTTGCAACCATTCAAGTATTGA
CATGGTGTTTGCCAATGTGGTCGTGGTTTTGCAGGTCTTTTTGCTTGACAACCTCGACCTTGGCATTTTCAATAAGTCGC
ATAGTGTGCTTCCTCGGATATCAGAATTTGACCCCGAGTCCTTCCGTCGAATGCTTGCCATGGCTGCTGACCCAGTTAAA
GGAACTACCTCCTACGCGCATGCCAATGTAA-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------S------SSS-------------S--S--SSSS---S-S-----S--------S----
----------S------------S-S--S--S--------S--S-----S-SS--S------S-S--------S-----S
--------------S--S-S------S--S--------S--S--------S--S-----SS-------------------
------------S-----S--S--S---S--S--------------------S----S--------S--S--S--S--S-
-S--S--S--S-----S---S----S--S-----S--S--S--S-----S-----S--S--S------------------
--------S-----S-S------S--S--S------------S-S--S---S-S--S-------------S-S-------
---S-----SSS---S----SS-----S----SS----S------S----SS--S-----S--S--S-----------SS
-S--S---S--SS-SSS-SS----SS-SSSSSS-S-SS-SS-SSSSSSSS--S-S-SS-S-SSSSSSS------------
----------S-----SSSSSSS-SSS-------S-S---S-----------S----------------------SS---
---S---------S-----SS-S--S--S-----S--S--SS-----SS----------------SS------S--S--S
---S----S--S---S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_667
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-------GCGGCCATCGAAATGTCAAA-----------------------------------------------------
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>reverse_1534
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-------------CAAAGACACCGGTTGCAGTG-----------------------------------------------
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>forward_1439
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-----------------------------------------------------------TCCATTGCGTTCTCGTGTGA-
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>reverse_2394
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-------------------------------------------------------------------------TCAGGGG
CATCTTGCAACAT-------------------------------------------------------------------
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