>input_sequence_66978
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--------------------------------------------ATGGATTGCCCTGGTTTCATACGGGTAGATGGAGCT
AGGGTAGCTCCAGGTGATGCTATTCAACCCGTATCCAATGTTCCCCATGGGCACATGCAAAATATCACAATAAGAGTGCT
TAAGGTGCGAGTGCCATCTTTC---ATGTTTTCCATTTCATCGTCATGCTATTTCCAAGGCCAATGGTTTCCTCATTAAG
TGACACTCCCTCCGTCCGAAAATACTTGTCATCAAAATAGACTAAAAGGGATGTATCTAGAACTAAAATACATCTAGATA
CATCTCCTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTATCATATGGATGATATATTTTACTTTAGCAT
GTTTTGTATAAATATAAAAAAGTTAAATTATATAGTGCCAGCGTTATAGTCAAATTTATAATAAAAAAAAGTCGAGTCTT
TTGTATTATTTAACAAGAGGTTCTTATGTTATTTACTTAATTAAAATCCAAAATGATGGCAGGAAAGAACAAGTGGAGAC
TGGTGGGTGTACTACGGCTTCAACAGTGTCCCCACAGGGGTGGGGCGCTTCCCAAGGTCATCGTTCACCTACTTAGCAGA
TAAAGCAAACCATTTTGCTTTTGGTGGTGCTGTGATTTCTCATAGGGCAGATCCAACTCCTCCAATGGGCAGTGGTTCCT
TCCCAAATGGTGGTCAAGGTCGCGCTGCATCTTTCACCAATCTTCGTATCATTGATGAGTATGGGAACAGCAAGCCCATC
ACGGCAGACTTGCCCGTGTTGGTTACGAATAACAAATGTCATACTATTACTCCTATTAATCATGGTGAATGCCTTTATGG
TGGGCCTGGAGGTTGTGTAAGATAA-------------------------------------------------------
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>chr4D_1_TraesCS4D01G329800
AAGTAACTTAGTTGGCATAATTGCTCCTGGATCCATGTAATAACTCAAACGAACTACTCCAACCCTACCTTTTGTATTTT
TCTTTGTTCATTTCTTCATTCACACATTTTCAAGAAGCTCTTTATGACTTCATGTTCCTCCACAGCGAACATACCCCCTT
ACTTTTGGATTTGTTTCTTGGGTTTAAGAGTTCTGCATTTGTACAGTGTTATAATTGCATGTTTTCCTCATCCTTTTCCC
TAGCTGTTGTGTATGTTGTTTCCATGAGAGCTTTTGTTGCGCAGTTTGCTATACACCAAACATCTACTAGAGGTCGTGAT
GACAAGTACTATGGCTTACATGCCACGATGGATGTGTACGGTCACAAACTAAAACCCGGACAGTGGAGTACGGTTGCAAT
TTGGGTTACTCATACTGGAGATGGTGCTAGATCAAGCATTAACTCGATTCAAGTTGGATGGCATGTAAGTGTCATTTTTG
CCATTGTATCCATACATAAT------------------------------------------------------------
----------------ACATAACCTTTCAATTCTGTCACTCAACATACTGAGTACTAGTCAATTGCTACGAGCATGAACC
A-----------------ACCTCAGCTCCATGCCAACCTAGAAAATTATTGGAAAAGTTGAAAATAACATAAATGT----
-------------------------------CAAAATAACTAAATAATATTGTATTTTTCTATCATAATGT---GTTGTC
CATCTATAATAAAATAGTAGTTAA----------------------------TATTGTAGCAATAATGAAACTATTTGTA
AATAAATCTATGCATAGGCAAATACTCTATTTTCTTTGCATTTGCATGTGAGAGAATGTTTTCTCACTTGTATGCCTTAT
TTTACAGATTTATCCATAGCACTATGGTGACTCACGTCCTCACTTCTATACCCGATGGACGGTAATGTGATAATGATGTT
GTAAATAATCAACTAACCAGTGATGTCACTCTAAGAGAAATCAA-----CATATCATGTTTTTGACCCATGCATGAACAT
GTATGCTACAGAGAGATGGATATGAAAAAACCGGATGCTTCAACATGGATTGCCCTGGTTTCATACGGGTAGATGGAGCT
AGGGTAGCTCCAGGTGATGCTATTCAACCCGTATCCAATGTTCCCCATGGGCACATGCAAAATATCACAATAAGAGTGCT
TAAGGTGCGAGTGCCATCTTTC---ATGTTTTCCATTTCATCGTCATGCTATTTCCAAGGCCAATGGTTTCCTCATTAAG
TGACACTCCCTCCGTCCGAAAATACTTGTCATCAAAATAGACTAAAAGGGATGTATCTAGAACTAAAATACATCTAGATA
CATCTCCTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTATCATATGGATGATATATTTTACTTTAGCAT
GTTTTGTATAAATATAAAAAAGTTAAATTATATAGTGCCAGCGTTATAGTCAAATTTATAATAAAAAAAAGTCGAGTCTT
TTGTATTATTTAACAAGAGGTTCTTATGTTATTTACTTAATTAAAATCCAAAATGATGGCAGGAAAGAACAAGTGGAGAC
TGGTGGGTGTACTACGGCTTCAACAGTGTCCCCACAGGGGTGGGGCGCTTCCCAAGGTCATCGTTCACCTACTTAGCAGA
TAAAGCAAACCATTTTGCTTTTGGTGGTGCTGTGATTTCTCATAGGGCAGATCCAACTCCTCCAATGGGCAGTGGTTCCT
TCCCAAATGGTGGTCAAGGTCGCGCTGCATCTTTCACCAATCTTCGTATCATTGATGAGTATGGGAACAGCAAGCCCATC
ACGGCAGACTTGCCCGTGTTGGTTACGAATAACAAATGTCATACTATTACTCCTATTAATCATGGTGAATGCCTTTATGG
TGGGCCTGGAGGTTGTGTAAGATAAGATGTAACAACCTTGTACTGAGCTTGCTTGCTCCACATCGTTCATCGCCAAATAA
AATATTATGGATGAGATAAAAATT-ATGAAGAGAATGTTCACTTCTTTACATTATGTTACACCAAGAACACATGCTTGTA
ACAAAAACTAGAGACTCGGGCGCACCTCATAGTCAGCCATCTGAATGAGTTGTTTAACACTTTGACAGACGACCAATGCA
AGCATTTGCATGCTTACTTTTCATACAATGCCCCAGTTGCACAGAAAACTCTTCAGAGTTACCTCCACCCAAAATTGCGT
AGTCCTCCAGGGTCTAATTCGTATTTTGATATTTACATTGGTCTTCGGTAAGATCAATAAAATATGAGATGTATGCTACA
AAGATTATCCCATTGGAAACTTTTTCAAATATTATGTCTGATGTTGAAACCGTGCCAGCTAGATTAAGGACGAAATTTGT
CTGGTTTGGAATGTTAAAGGTGCAAATTGTCTTAGAGTTGAGTGATGAAATTTATACTTTGTGATTTGTTGATTTGTTGA
GGAACTAAAACTAGAATTTTCTCTTTTCCTTATACTAGTAAGCTTGCACGTGTAACACACGTAATCTTAGGAATTTCATT
TATGATTATCCAACCTTGGACCTGTGCAAGAAAAACACACCAAATATGCTCTTTTTGTCAACATTGGTTAGATGTTCAAA
ACATCATAGAGTTTAAGTGCAGCCTTCTTGTCCCTTCTCATTCTGTGGAATCGGAAGCTTGAAACGTCGAGCAACAAGAA
AAGCTTTAGACACAACATATAGCAATGCACCATCAGGAGAAAAATGGCTAAATTTTGAGAGAAGAATATAAGCAGATGTA
CAATCGCGAAGCTATCAGAAAACTTGAGATCCCAACTTAGCAGTATGGTGAATTAGAAACCTCAGTAAAATGATACCATT
GTGACTAAAGTTCCAGGAAAAGAATCCCTGCATTTTACACGTATTCTCTTCATTAAGGTAATTTGA
>chr5A_1
AAGTAACTTAGTTGGTATAATTGCTCCTGGATCCATGTAATAACTCAAACGAACTACTCCAACCCTACCTTTTGTATTTT
TCTTTGTTTATTTCTTCATTCACACATTTTCAAGAAGCTCTTTATGACTTCATCTTCCTCCACAGCGAACATACCCCCTT
ACTTTTGGATTTGTTTCTTGGGTTTAAGAGTTCTGCATTTGTACAGTGTTATAATTGCATGTTTTCCTCATCCTTTTCCC
TAGCTGTTGTGTATGTTGTTTCTATGAGAGCTTTTGTTGCGCAGTTTGCTATACACCAAACATCTACTAGAGGTCGTGAT
GACAAGTACTATGGCTTACATGCCACGATGGATGTGTACGGTCACAAACTAAAACCCGGACAGTGGAGTACAGCTGCAAT
TTGGGTTACTCATACTGGAGATGGTGCTAGATCAAGCATTAACTCGATTCAAGTTGGCTGGCATGTAAGTGTCATTTTTC
CCATTGTATCCATACATAAT------------------------------------------------------------
----------------ACATAACCTTTCAATTCTGTCACTCAACATACTGAGTACTAGTCAATTGCTACGAGCATGAACC
A-----------------ACCTCGGCTCCATGCCAACCTAGAAAATCATTGGAAAAGTTGAAAATAACATAAATGT----
-------------------------------CAAAATAACTAAATAATATTGTATTTTTCTATCACAATGT---GTTGTC
CATCTATAATAAAATAGTAGTTAA----------------------------TAGTGTAGCAATAATGAAACTATTTGTA
AATAAATCTATGCATAGGAAAATACTCTATTTTCTTTGCATTTGCATGTGAGAGAATGTTTTCTCACTTGTATGCCTTAT
TTTACAGATTTATCCA----------------------------------------------------------------
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>chr4B_182
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---------------------GTTTAAGCATTCTCCATTTGTACAATGTT-TAATTGCATGTTTTCCTCATCCTTTTTCC
TAGTTGTTGTGTATGTTGTTTATATGGGAGCTTTCATTGTGCAGTTTGCGGTACACCAAACACCTTATGGAGGTCCTAGT
GACAACTACTATGGCTTACATGCCACGATGGATGTGTACGGCCACAAACTAAAACCAGGCCAGTGGAGTACGGCTGCAAT
TTGGGTTAGTCATCATGGAGACGGTGCTACGTCAAGCTTTAATTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAGACATTTCCTTTGAATTCGAAC-CTCAACATGCTGAGTAGTAGTCAATTACTACAGGCATTCTAC
TGCAATAATAAAGACGTGACCTTGGCTCCATTCCAGCTTAGAAAAACATCGGAAACATCACAAATAATACTTCTGTATTG
ACTAGATGCATGGGCTACACGCCCCAACCTCCAAAACAACTAAATTACAATTGTATTTTCTTCCAGTATGGTCTGTAATC
CATCACTAAAAAATAGCAGCTAGTCCTAAAAAATTATCTAAGAAACATCAGTTGTTTTAACATCAATGGAACTATTTGGG
AAGAAAACTCGCCAAATATTTATTTGTTC------TTACATTCGTATGTGAGAGAATGTTTT-TCACTTGTACACCTTAT
TTTACAGATTTATCCAGAGCGTTATGGCGACTCACGTCCTCACTTCTATACCCAATGGACGGTAATGTGTTAATGTTGCT
ATGAATAATCAGCTGACAAGTGATCTCACTCTAAATGGAAACATCATACCATATCATGTTTTTGACCAATGCATGCACAT
GCATGGTACAGAGAGACGGACATGAAGCAACTGGATGCTTCAACATGGATTGCCCTGGCTTCGTACGGGCGAATGGCGCT
GCCATATCTCCAGGTGATGCTATACAACCAGTTTCTGATGTTCCCCATGGGTACATACAGAGTATCACACTACGAGTGCT
TAAGGTGCGAGTGCCATCTTTTTTTATATTTTACATTACATTGTCATGCTATTTTTAATGCCAATAGTTTCCTCATTAAG
TCA-----------------------------------------------------------------------------
------------------------------------------------TATCACATGGACGATAG----TACTTTAGCCT
GGATTGTACTCAAGTGTGTACAAAATTGTGTGACTTTCGCTATTGATTCACATAGT------------------------
-------------------------------TTTACTTAACTCGAATACTAAACGATCGCAGGACAAAAAAAGCGGAGAC
TGGTGGGTGTACTACGGCTTCAATAGCGTTCCTACGGGGGTGGGATATTTCCCAAAGTCATTGTTCACCTACCTGGCAAA
TAAGGCAAACCAGTTGGCATTTGGTGGTGCTGTGGTTGCCCACAGGGCGGCTTCAACTCCTCCGATGGGTAGCGGTTCCT
TCCCTAATGGTGGTCAAGGGCGCGCTGCTTCTTTCACTAACCTTGGTATCATTGACGAGGAGGGGAACAGCAAGCCCATC
ATGGCAGACTTTCCCACGTTAGTTACTAATAACAAATGCCACTTTATTACTCCTATCAATCATGCTGCATGCCTTTATGG
CGGTCCTGGAGGTTGTGTGAGATAAGATGTAAGAACCTTTTATTGAGCTAGCTCGCTCCATATTGTTACTCGCCTAATGA
AATAACATGGAGGAGATGACAAATTATGCAAAGACTGTCCGCTTCTTTACATTGTATTACACCAA---------------
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>SNPs
---------------S----------------------------------------------------------------
--------S--------------------------------------------S--------------------------
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----------------------S---------------------------------------------------------
-------------------------------------------------------------------------S------
---------------------------------------------------------S---------------------S
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-----------------------S----------------------S---------------------------------
-----------------------------------------------------------------S--------------
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------------------S-------------------------------------------------------------
----------------S---SS-----S-------------------------S---------------S-----S--S-
S-S--------S--S--S------S---------SS-S--S--S-----------------------S-------S----
-S---S----------S---S-----SS---S--------------------------S---S------SSS----S---
SSSS--S----------------S-----S--S--SS--------------S----S--S-S-------S--S-------
---------------------S-----S----S----S---S------------SS--S------S--------------
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S----SSSSS---------S-
-SS-----SSS-SS-SSSS-SSSS-SSS-S-SSSS-S-SSSSS-S--SSS--S-S-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-SS---S-S---S---S------S-S--S---S------
-----------------------S--S--S--S--S--------SSSS-------S-----S----------S-S---S-
---S--------S--S--S---------------S--S-S--S-----S-S-S----------S-----S--S-------
----S--------------S--------S--------S--S---S----------S---S-S------------------
-S---------S---SS---S-----S-----------S--SSS------------S-------S--S------------
S--S--------------S-------------S------S--S------S---S------S--S---SS-----S---S-
----SS-----S-----S-S--S-----S-S---S---S-S------------S-S---------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_664
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----ACGAGCATGAACCAACCTCA--------------------------------------------------------
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>reverse_2181
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--------------------CGCACCTCATAGTCAGCCAT----------------------------------------
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