>input_sequence_66910
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----------------------------------------ATGGCGTCCCGTACAAAGTTATCTGGTATCCAGAGGCAGG
CCTTGGCATTATACAGAGGGTTCCTTCGGACAGCACGGCTCAAGTCCCCGGAGGAGCGCCGCAGGATCGAGTCTGTTGTC
TCAGCAGAGTTCCGTGAGAATGCCAAGAGTGTAGATCGCAGGAACTTTGTGTACATTGAGTATTTGATGAGGAGAGGGAA
GCGGCAGCTCGATCAGCTCAAGAATCCTGATATTACTGGACTTTCTACACTTGAAATAAATAAGGTATATATCATCTTGA
AAAA-GGCCTAAATTTCTCTCCCACTACTATTGATATCAAATGATATTGAGC-AGGCTGTTGCATGAAAACATTGGATTG
GCCCAAATACTGGTAGCTGTTTGCTATGCATATAGTTGTTTGCATATGAATAGTTGTTTA---CATAGAAGTGTTCTAGT
CAAGTGAATAGTTACAGCTTGTCTTGGTAATTTGTAGGAGATGCTTAAAGGTAAGTTTAGTTGCTCCAGAACATCTCTTG
GACTGATTGGTTGGTTTTGTGTATTCTGAGATCCAATTCCCATATCATTTACACTTCACAGTTACAGCTTTTACCACATG
TTTCTCTTTGTTTGTA----------------------------------------------------------------
-------------------TAAAGGTAATTAGTGCAAGATCGAACCATCTGCTTCTATTTGCTAACATCTCAAGTATTAT
AATCTGACG---TATATTGTAG-----TCTTTTAAGGTAGCAATAATATGTTGCTCTTATACAAACTTCTCCTTAAAGGC
TAAAACTAAAGATAATCTCCCTCACATGCTTGCATTGCTTTCGGAATTTTGCAGGCCTCTTCTATTCCAGAACAACGTGT
CGAGCATGATCTTGGTGTTTCTACTGGGAGACAGTAA-------------------------------------------
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>chr4D_1_TraesCS4D01G288800
GGAAGGAGTTAAAGATGGTGGTTCTGGAATACTTTTGCAACACCACCGCTTGGGGGCATCAGTACCGTGATCCAAGATGC
CTAGGGATTTCTTGACCAACGACCCATATAGTCAAGCGCCTTGTTGTTCGAGGCGACGCATGTTCAGACATCCACATTTC
CACATCACCATTAAAGTTGTCACGCGCTTTCTTGGAGCTTGGCAAATCGGAGGACCGCCTTTCCCCCCTTCTGCAGACGC
TAGGGCGACGACATTGGTTGAGACCGATGACCGTGGTTGCATGGAGCCGAAAGAACCTTTTTTTTTAATTCGTTTTTCTT
TGGGGGTTTTCTGGTAATTTTTCTTAATGTGCCGACCCTGGAGAGTGTTCCAAATAGAAGCCACGTCTGGTGTAAAATTT
GCCGGTGATATGAATGAACACGTGGGCCTTTCTCTAAACTGATTCCTAACCTGCAATTCCCTATTTTACCCCATCGAACA
CGCCAGGAGGATCTTTCGTCCCTTCGCTCGTCTCTCCGGTGCGATACCCCAGCAAGCGACGCGCCCCCAGCGCCCGTGCC
CTGCCCTGCCTCCGCCCCACTACGCGCGCGCGGCCCTCCCTCCGCCCCAGTCCCTCCGCGATCCCGGCAGAGTCGGCGCC
GGCGGGCCAGTCTTAGCTCCCGCCGCTCCGTCTGCCCCTGCCTCCACCCCACTGTGCCCGCCCCCTCCGTCGTCGACCTT
GCGTGCGCCGGTGAGCAGCCACACCGAGGTTCTTCTCCTCCTTCTATTGCACTGGCACGGATTGGAGATTCATCCGGACT
TGCTTGCTTAGATTTGTTCCGATAGTTCTGCACTTGTATTTCTATCCTGTGCGCGATCTAATCCAAAATTTTCGTTCTGA
GCCCCGTTTGCTGTGGATTTGATTGCTAGGCGTTAGAGCAGTTTGTCACCACAAGATAACTCAGTTCATACTTCCAATTT
TGTTAGGCTTAAGCTTTGATGATTGCTTCACAAGGATGAGATGGCGTCCCGTACAAAGTTATCTGGTATCCAGAGGCAGG
CCTTGGCATTATACAGAGGGTTCCTTCGGACAGCACGGCTCAAGTCCCCGGAGGAGCGCCGCAGGATCGAGTCTGTTGTC
TCAGCAGAGTTCCGTGAGAATGCCAAGAGTGTAGATCGCAGGAACTTTGTGTACATTGAGTATTTGATGAGGAGAGGGAA
GCGGCAGCTCGATCAGCTCAAGAATCCTGATATTACTGGACTTTCTACACTTGAAATAAATAAGGTATATATCATCTTGA
AAAA-GGCCTAAATTTCTCTCCCACTACTATTGATATCAAATGATATTGAGC-AGGCTGTTGCATGAAAACATTGGATTG
GCCCAAATACTGGTAGCTGTTTGCTATGCATATAGTTGTTTGCATATGAATAGTTGTTTA---CATAGAAGTGTTCTAGT
CAAGTGAATAGTTACAGCTTGTCTTGGTAATTTGTAGGAGATGCTTAAAGGTAAGTTTAGTTGCTCCAGAACATCTCTTG
GACTGATTGGTTGGTTTTGTGTATTCTGAGATCCAATTCCCATATCATTTACACTTCACAGTTACAGCTTTTACCACATG
TTTCTCTTTGTTTGTA----------------------------------------------------------------
-------------------TAAAGGTAATTAGTGCAAGATCGAACCATCTGCTTCTATTTGCTAACATCTCAAGTATTAT
AATCTGACG---TATATTGTAG-----TCTTTTAAGGTAGCAATAATATGTTGCTCTTATACAAACTTCTCCTTAAAGGC
TAAAACTAAAGATAATCTCCCTCACATGCTTGCATTGCTTTCGGAATTTTGCAGGCCTCTTCTATTCCAGAACAACGTGT
CGAGCATGATCTTGGTGTTTCTACTGGGAGACAGTAAAACAAGAAGAGCTTCCTTTTAATGGTGTTTGACATA-AAAATG
GCCGCATATGAAAGCTCTTTATGATGTAACTTCTCTGGAGCACCTTCATTTTCCCATAGGAATCTCTAGATGAATTTCGT
AACATCTTATTGCCCTCTGGATATTAGAAGTGTGGTTCATGTATGAATTCTTTTGGTCACCAAGATCAACTGGACCAGAG
TTTATTGTCAAAGAGCACTTACATTGGAGCTCTATACTGTCTAAACGACTAAACCATGCGGTTTAAATTCAGCAATGGTG
TTACTTTTTATGCAATGTAATTCACCCCTATCTTTTATATAGACTTATGTGCTCAATTGAGTTTAACTCAGAAAAAAAGA
TGATGCGACTTAATGATGGAATTTATGTTATACTGAAAACTGAATTGTATTGCTCTAAGGTATAACATAAATTCCATCAT
TAAGTCGCATCATCTTTTTTTCTGAGAACTGAATTGTATACTGAAA----------------------------------
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-----------------------------------------------------------------------------ACT
GTAGTCATGGTTTATGAGCTTAAGATCTTTTAGACCTTGCAGTGTATCCGTGCCTGTCAACAATCCGTGTGTTTTTATTA
TGCTTGTTCATAATCTAAAA-ATGTGCATTATTGACCCTTCAGGTAAGTTGCATGTCTTTGAACTGTCATTTTGTCACCA
TTATGGTGAATATTTTCCTCCATTTTTACTCACTTGATCAGCAGCCCGTTTGTCCTTGTGTCGTCGTGGCCTTTCTTAAG
GGTGATCAGGCATTTTTCTTTGTATCTTAAGTAATCAGTTTGGCTTGTAAAAGCACTGACATAATTCTAGTGCATTAGGT
TAGCTTGTAGTGACTTTAAGGTGCCCTGATA---TATTCATTGCTGAGCTCACCTGTGTCCTGAAGGACACGTCTAAAAT
AGCAACTAACTGTCTCAAATGGTC-TATCAAATTTAGTTGCAATAGCCCTTGGTTATGTCCAATAGTATGCAAGAACATT
GTTACTTGCTGCTCCACTCAAACATGCATGGTGT
>chr4B_926
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---------------------------------------------TCACCACGAGACAACTCATTTGATAGTTCCACTTT
TTTGTCAG----GCTTTGATGACTGCGTCACAAGGATGAGATGGCGTCCCGTACAAAGCTATCTGGCATCCAGAGGCAGG
CCTTGGCATTATACAGAGGGTTCCTTCGGACAGCACGGCTCAAGTCCCCAGAGGAGCGCCGCAGGATAGAGTCCGTTGTC
TCAGCAGAGTTCCGTGAGAATGCCAAGAGTGTAGATCGCAGGAACTTTGTGTACATTGAGTATTTGATGAGGAGAGGGAA
GCGGCAGCTTGAGCAGCTCAAGAATCCTGATATCACTGGACTTTCTACACTTGAAATAAATAAGGTATATATAATCTTGA
AAAAAGGTCTAACGTTCTCTCCAACTAATACTGATATCAAC-TACATTGAGTAAGGATGTTGCATGAAAACATAGGATTT
GCCCAAACGCTGGCAGCTGTTTGCTATGCTTATGGTTGTTTGCATATGAATAGTTGTTTACTCCATAGAAGTGTTCTAGT
CAAGTGAATAGTTACACCTTGTCTTGGTAATTTGTAGGAGATGCTTAAAGTTAAGTGTAGTTGCTCCAGAACATTTCCTG
GACTGATCGGTT-GTTTTGTGTATTCCGAGATCCAATGCTTGTATCATTTACACATCACAGTTACAG-TTTTACCACATG
TTTCTCTTTGTTTGTA----------------------------------------------------------------
-------------------TAAAGGTAATTAGTGCAAGATCGAACCATCTGCTTCTATTTGCTAACATCTCAAGTATCAT
AATCTGATGACGTATATTCTATCTAGTT-TTTTAAGGGAGCAACAATATGTTGCTCTTACACAAACTT-----------C
TAAAACTAAAGATAATCTCCCTCACATGCTTGCATTGATTTTGGAATTTTGCAGGCCTCTTCTATTCCAGAACAACGTGT
CGAGCATGATCTTGGTGTTTCTACTGGGAGACAGTAAAACAGGAAGAGCTTGCTTTTAATGGTGTCCCACATAAAAAATG
GCCGCATATGAAAGCTCTTTATGATGTAACTTCTCTGGAGCACCTTCATTTTCCCATAGGAATCTCTAGATGAATTTCGT
AGCATCTTATTGCCCTCTGGATATTAGAAGTGTGATTCATGTATGAATTCTTTTGGTCACCAAGATCAATTGGACCAGAG
TTTATTGTGAAAGAGCATTTACATTGGAGCTCTATACTGTCTAAACGGCTAAACCATGAGGTTTAAATTCAGCAATGGTG
TTACTTTTTATGCAATGTAATTCACCCCTATCATTTGTGTAGACTTATGTGCTCAATTGAGTTTACCTCGGAAAAAAAGA
TGATGTGACCTAATGATGGAATTTATGTTATACTGAAAACTGAATTGTATTGCTCAATGGTACTCCCTCCGTTCCTAAAT
ATAGGTCTTTTTAGGCATTTCAAATGGACTACAAACGGAGGGAGTACACCTTAGTGCATGCTTTCACTAACGTTGTTCTT
CACCAGCAGTGTAAATGCTGCAATATTTTTTTTTTGCTATAAGGTTCTGTTTGAAAAAGCAATGAGTTTATCGTCTAGGT
CAGTTTAAATAGTTCTTCTGAATTCATATATGGGCCAGATCAAGCAATGTTGCAAAGCTATGGAAGATGGTTCTAACTGC
TAGTGATGGAATCATCACCACCACAGTTAATGTATCATACCGGCTCACAC------------------------------
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---------GCTAGAACTTCCTGAAAATGGTATGTCTTTCCATAGGCTAGATCTTACATGCGCTGCTGCTGAGGTACTTA
TGTACTGAATTAACTTCAGATCTACAGCGTATCATCCTTGACTTTACCTATAGCCAACAAGAGAACTAACCTAATATACT
GTAGTCATGGTTTATGAGCTTAATATCTTTTAGACCTTTCAGTGTATCCGTGCCTGTCAATAATCCGTGTATTTTTATTA
TGCTTGTTCATAATCCAAAA-ATGTGCATTATTGACCCTTCAGGTAAGTTGCATGTCTTTGAACTGTCATTTTGTCACCA
TTATGGTGAATATTTTGCTCCATTTTTACTCACTTGATCAGTAGCCTGTTTGTCCTTGTGTCGTCGTGGCCTTTCTTAAG
GGTGATCAGGCATTTTTCTTTGTATCTTAAGTAATCAGTTTGGCTTGTAAAAGCACTGAAATAATTCTAGTGCATTAGGT
TGGCTTATAGTGACTTTAAGGTGCCCTGATATATTATTCATTGCTGAGCTCACC----------AGGATACGTCTAAAAT
AGCAACTAACTGTCTCAAATAGTCTTATCAAATTTAGTTGCAATAGCCCTTGGTTATGTCCAATA---------------
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>chr4A_926
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---------------------------------------------TCACCACGAGACAACTCATTTGATAGTTCCACTTT
TTTGTGT----AGCTTTGATGACTGCGTCACAAGGATGAGATGGCGTCCCGTACAAAGCTATCTGGTATCCAGAGGCAGG
CCTTGGCATTATACAGAGGGTTCCTTCGGACAGCACGGCTCAAGTCCCCAGAGGAGCGCCGCAGGATCGAGTCCGTTGTC
TCCGCAGAGTTCCGTGAGAATGCCAGGAGTGTCGATCGCAGGAACTTTGTGTACATTGAGTATTTGATGAGAAGAGGGAA
GCGGCAGCTCGATCAGCTCAAGAATCCTGATATCACTGGACTTTCTACACTTGAAATAAATAAGGTATATATAATCTTGA
AAAAAGGCCTAAATTTCTCTCCCACTAATACTGATATCAAAGTACAACGAGTAAGGATGTTACATGAAAACATAGGATTT
TCCCAAATGCTGGCAGCTGTTTGCTATGCTTATAGTTGTTTGCATATGAATAGTTGTTTACTCCATAGAAGTGTTCTGGT
CAAGTGAATAGTTACACCTTGCCTTGGTAATTTGTAGGAGATGCTTAAAGTTAAGTGTAGTTGCTCCAGAACATTTCCTG
GACTGATCGGTT-GTTTTGTGTATTCCGAGATCCAATGCTCGTATCATTTACACATCACAGTTACAG-TTTTACCACATG
TTTCTCTTTGTTTGTACTCCCTCCGTAAACTAATATAAGAGTGTTTAGATCACTATTTTAGTAATCTAAACGCTCTTATA
TTAGTTTACGGAGGGAGTATAAAGGTAATTAGTGCAAGATCGAACCATCTGCCTCTATTTGCTAACATCTCAAGTATCAT
AATCTGGTGACGTATATTCTAG-----T-TTTTAAGGTAGCAACAATATGTTGCTCTTATACAAACTTCTCCTAAAAGGC
TAAAACTCGAGATAATC---CTCACATTCTGGCATTGATTTTGGAATTTTGCAGGCCTCTTCTATTCCAGAACAACGTGT
CGAGCATGATCTTGGTGTTTCTACTGGGAGACAATAAAACAAGAAGAGCTTGCTTTTAATGGTGTCCAACATAA-AAATG
GCCGCATACGAAAGCTCTTTATGATGTAACTTCTCTGGAGCACCTTCATTTTCTGATAGGAATCTCTAGATGAGTCTCGT
AGCATCTTATTGCCCTCTGGATATTAGAAGTGTGGTTCATGTATGAATTCTTTTGGTCACCAAGATCAATTGGACCAGAG
TTTACTGTGAAAGAGCATTTACATTGGAGCTCTATACTGTCTAAACGACTAAACCATGTGGTTTAAACTCAGCAATGGTG
TTACTTTTTATGCAATGTAATTCACCCCTATCATTTATTTAGACTTATGTGCTCAATTGAGTT-AACTCAGAAAAAAAGA
TGATGTGACCTAGTGATGGAATTTATGTTATACTGAAAACTGAATTGTATTGCTCAATGTTATGT---------------
-------------------------------------------------CTTAGTGCATGATTTCACTTTCGTTGTTCTC
CACCAGCAGTGTAAACTCTGCAATATATATTTTTTGCTATAAGGTCCTGCTTGAAAAAGCAATGAGTTTATCGTCTAGGT
CAGTTTAAATAGTTCTTCTGAATTCATATGTGGGCCAGATCAAGCAATGTCGCAAAGC-ATGGAAGATGGTTCTAACTGC
TAGTGGTGGAACCATCATCACCACAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTGAGGGAGTCACTTCTTTGTATTTTGGGCGTGAACAGTATTTTTTTTTGTTATGTT
TTCTTAATCGGGCCCCTCCCAAGATCATAAATTTACGATTCCTGCCTCCGCCACTGACCACAGTTTAATGTACTTGTACT
GGCTCACTTGCTAGAACTTCCTGAAAATGGTATGTCTTTCCATAGGCTAGATCTTACATGCGCTGCTGCTGAGGTAGTTA
TGTACCAATTAGCC-TCAGACCTACAGCGTATCATCCTTGACTTTACCTATAGCCACCAGGAGAACTAACCTAATATACT
GTAGTCATGGTTTATGAGCTTAAGATGTTTTAGACCTTTCAGTGTATCCACGCCTGTCAACAATCCGTGTATTTTTATTA
TGCTTGTTCATAATCTAAAAGATGTGCATTATTGACACTTCAGTTAAGTTGCATGTCTTTGAACTGTCATTTTGTCACTA
TTATGGTGAATATTTTGCTCCAATTTTACTCACTTGATCAGTAGCCTGTTTGTCCTCGTGTCGTCGTGGCCTTTCTTAAG
GGTGATCAGGCATTTTTCTTTGTATCTTGAGTAATCAGTTTGGCTTGTAAAAGCACTGAAATAATTCTAGTGCATTCGAT
TGGCTTATAGTGACTCTAAGGTGCCCTGATA---TATTCATTGCTTAGCTCACCTGTGGCCTGAAGGACACATCTAAAAT
AGCAACTAACTGTCTCAAATGGCC-TATCAAATTTAGTTGCAATAGCCCTTGTTTATGTCGAATAGTATGCAAGAACATC
GTTACTTGCTGCTCCACTCATACATGCATGGT--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---S------S--S---S-----S---
-S-SS-SSSSS-----------S---S-------------------------------S---------------------
-------------------------------------------------S-----------------------S------
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---------------------------------S--------------------------------------S-------
---------------------------S--S----------SS-S------S----S----------------S-----S
--------S----S---------------S--------------------------------------------------
----------------S---------------------------------S-----S-----------------S--S--
-------S----S-------------S----------S-S-S------------S------------S------------
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-----------------------------------------------------------------------------S--
-------S----------S---------S--------------S-----------------------------S------
-------------------------------------S---S--------------------------------------
---------------------------------------------------S-------------SSS------------
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-S-------------------------------------------------------------------S----------
--------S--------S----------------------------------------S---------------------
--------------------------------S-----S-----------------------------------------
-----S---S---------------------------------------------S-S-----SS-S-SSS----SSS--
SS--SSSSS-SSSSSSS---SSSSS-S---SS-SSSSSSSSSSSS-----------------------------------
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--------------------------------------S-------------------------------S---------
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----------------S------------------------S----S---------------------------------
-----------------------------------------------------------S--------------------
-S----S---------------------------------------------------S---------------------
-------------------------------------------------------------------------------S
--------------------S-----------SS
>forward_152
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----------------------------------------------------GCGACGCATGTTCAGACATC--------
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>reverse_1882
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-----------------------------------------CGGAATTTTGCAGGCCTCTT-------------------
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>forward_864
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--------------------------------------------TCCTGTGCGCGATCTAATCC----------------
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>reverse_3407
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----------------------------------------------CGTTTGTCCTTGTGTCGTCG--------------
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