>input_sequence_66901
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----ATGACCGGCGGCGTGAACGGCAACGGCGGAGGCGGGGGTGGGGGCGGCGGCGGCGGGGCGTGCGCGGTGTGCAAGC
ACCAGCGTCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTG
CACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGCCGCCGCGCCGCCGA
GACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCG
AGAACGCCGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCGACCAGTGCGCGTGCTGCGCCACCACGTTGCAC
CACCAGCAGCAG---CAGCAGCAGATATTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCA
CGGCGCCAGCACCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCTGCCAATGGCAACGGGC
CGATGCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAAACGACGATGGCCGGGTACGCGCAGGGCGACCGGCACCAC
GCCGCGTCCGGCGGAGCGAACGGCGCCGGCGCGCCGAGGCCCGGGGCAGCTGGTCAGGCGGAGCCCAGAGAGAAGAGCAG
CGCGAGGTAAGATGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGTAGGTTTGCATTGCATGGTGGATATATATATAT
ATATGGGCTTCTTCTATGCGTTGTGTGTTTGCAACTGCAGGTGTGACGCTCAGCGCACGGCTAGCTAG------------
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>chr3B_1_TraesCS3B01G196100
CACCTGCTTGATTTGTCGATTCAACTTTGGTCAGGAGAA-GGGGCATGTTGTGTTGTTGAGCTTATGCACAAAGCACCTT
GAAATCGGCTAATTGGTTTATTCTGTCACAGTTCTTTGATATTATAGCCATGCCCATTCGTTGGGTGAATGGATCAAATT
TTATGGTGGTTGATCCATTAGACATCCTGA---AATAATAGTGTGATTGTGTGAGGAAAAAGCCCAGGTACTTCTGGGTA
AGTGACCACAGAACAAGATATAAAGATGAATGTGTTCTTACTTTGGGCCTTT---GGCTCGCTAACACATAAGTGAGAAG
TATGATTGTGCTGTGGGCTCCCAACAGATTATTATCCGAAATTTCTCCTCAACC-------ATGTCGGTGATCCATTGTG
AGAGACTGATACCAAGTCAGAATGAAACGGTTTGTTTCACCTGATTTTTTTTTTTTTTTTGCTGAGCACATATGTGAGCT
CCGGATTTGTAAGCGATTAATCATAATGTTGTGCTGTAC-------AATTGAAGATGGCCTCTCCATTTTTCTGAAGAAG
ACAT--ACAACTGATGCCATGTTCTTTTCTGCTGATGCATTCTGGAAGGATTTCTGTTCAGGTACAAGATGTACACATCA
GTGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAATGCATTTTTGT
ATTGCATAGAAACTGAAGACACGTGGTGCATGCGTCACTCCATGCATGCGTCACGTGACATAATTGCATGGTCTGTGAAA
TGAAACTACTACGTG--------TACTGATTATATGTGTGTATGT----------TTTTGTACGATGTATCAGTAGAAGT
TTCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGTAAACCCTACTTCCACCTTACT
ATCTTTGGGAGCGCATATATACGCGTAGAATCGTACACACGCATCTCTCTCCTCTCTGCACTG---TGCGTAGCCCGGAC
CGACATGACCGGCGGCGTGAACGGCAACGGCGGAGGCGGGGGTGGGGGCGGCGGCGGCGGGGCGTGCGCGGTGTGCAAGC
ACCAGCGTCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTG
CACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGCCGCCGCGCCGCCGA
GACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCG
AGAACGCCGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCGACCAGTGCGCGTGCTGCGCCACCACGTTGCAC
CACCAGCAGCAG---CAGCAGCAGATATTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCA
CGGCGCCAGCACCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCTGCCAATGGCAACGGGC
CGATGCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAAACGACGATGGCCGGGTACGCGCAGGGCGACCGGCACCAC
GCCGCGTCCGGCGGAGCGAACGGCGCCGGCGCGCCGAGGCCCGGGGCAGCTGGTCAGGCGGAGCCCAGAGAGAAGAGCAG
CGCGAGGTAAGATGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGTAGGTTTGCATTGCATGGTGGATATATATATAT
ATATGGGCTTCTTCTATGCGTTGTGTGTTTGCAACTGCAGGTGTGACGCTCAGCGCACGGCTAGCTAGCAGTGGGCTATG
GGAGAAGATGAAGGC---------------------TGAAATTCAACTGTTTCTTACGAAATTCATGTACTAATTAGGAA
CGAGCCCTACCAAGTATTGCTTCTGGAATAAAAAAAATAGGTTTCGCTGTTGCTTCATCT--------------------
------------------------------TTTTTGTGC---------TTTTCTTCTGCCTGAGCAGTGAGCAGGATGTC
GAAAGTTC--AGTGTAAAACCCCAGCTTTGTATAACTGGTGATTTTTCATTTAATTAGAAGCTAGAAGATGACCCATGCA
TCTTAGAGAATGTTCTAAGCCATGCTTGTTGATTTAAGCAGCTGGTCATCCTGG--------TAGAACTTCAGTTTCTTT
CACTATTATCCATTTCGGGAAAGTACATAGGGATTAAAAACACATGAACAGAGAGTGTTTTTTTTAATGCGTGGTTTTGT
TTTAGGGAAGCATCACCTTTTTTTGAACCTGAGGGAAGCATCACTTGAGAGGCATTGCCGTGATGTATGTCTCAGATGAA
ATCAATAGCAAAATCATCTAAACTTCCGAGTTCAGGCACTGGTTTTTTTGACGGTGCTACGGCGGGCTTACGCCGGCCTG
AACCTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTATCCGGCTTTAGTTTACAATCTCATAGATAGGTGAAACAACATGGTACCCCATTCGCG
CAGCAAACCTTGCGCTTGCTCATTAGTACATCTGCTAGACCAAAGCAGAATATCATCAGCGGCAGAACGAGCGATGAGGT
GAACCGGTTGAATGTCGTCC------------------------------------------------------------
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------------------CTGAAGACTTTTGCATTC
>chr3D_1
CACCTGCTTGATTTATCGATTCAACTTTGGTCAGGAGAAAGGGGGATGTTGTGTTGTTGAGTTTATGCACAAAGCACCTC
ACAATTGGCTAATTGGTTTCTTCTGTCACAGTTCTTTGATATTATAGCCATGCCCATTCTTTGGGTGAATGGATCAAATT
TTATGGTGGTTGATCCATTAGACATCCTGA---AATAATAGAGTGATTGTGTGAGGAAAAAGCCCGGGTACTTTTGGGTA
AGTGACCGCAGAACAAGATATAAAGATGAATGTATTCTTACTTTGGGCCTTT---GGCTCGCTAACACATAAGTGAGAAG
TATGATTGTGCTGTGGGCTCCCAACAGATTATTATCCGAAATTTCTCCTCAACCAT---GTATGTCGGTGGTCCATTGTG
AGAGACTGATACCAAGGCAGAATGAAACGGTTTGTTTCACCTGATTCTA--TTTTTTTTTGCTGAACACATATGTGAGCC
GTGGACTTGTAAACGATTAATCATAATGTTGTGTTGTACGGAGTATAATTGAAGATGGCCTCTCCATTTTTCTGAAGAAG
ACATGTACAACTGATGTCATGTTCTTTTCTGCTGATGCATTCTGGAAGGATTGCTGTTCAGGTACAAGATGTACACATCA
GTGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAATGCATTTTTGT
ATTGCATAGAAACTGAAGACACGTGTTGCATGAGTTACTCCATGCATGCGTCACGTGACATAATTGCATGGTCTGTGAAA
TGAAACTACTACGTGTACTGAACTACTGATTATATGTGTGGTTTTGCGCGTATGCTTTTGTACAATGTATCAGTAGAAGT
TTCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGCAAACCCTACTTCCACCTTACT
ATCTTTGGGAGCGCATATATACGCGTAGAATCGTACACACGCATCTCTCTCCTCTCTACACTGTGTTGCGTAGCCCGGAC
CGACATGACCGGCGGCGTGAACGGCAACGGCGGAGGCGGTGGG------GGCGGCGGCGGGGCGTGCGCGGTGTGCAAGC
ACCAGCGGCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTG
CACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGCCGCCGCGCCGCCGA
GACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCG
AGAACGCCGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCGACCAGTGCGCGTGCTGTGTCACCACGTTG---
---CAGCAGCAG---CAGCAGCAGATATTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCA
CGGGGCCAGCGCCGGAGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGCGCCGCCAATGGCAACGGGG
CGATGCCCGCGCGCCCTCACGTGTCAGCTCCGGCGCCGCAGACGACGATGGTCGGATGCGCGCAGGGCGACCGGCACCAC
GCCGCGTCCGGCGGAGCGAACGGCGCCGGCGCGCCGAGGCCCGGGGCAGCTGGTCAGGCGGAGCCCAGGGAGAAGAGCAG
CGCGAGGTAAGTTGAGGACGCTTCTCATT----CTTCCGTTGAGGTGGAGGTTTGCATTGCATGGTGG------ATATAT
ATATGGGCTTCTTCTATGCGTTGTGTTTTTGCAACTGCAGGTGTGACGCTCAGCGCACAGCTAGCTAGCAGTGGGCTATG
GGAGAAGATGAAGGC---------------------AGAAATTCAACCGTTTCATATGAAATTCATGTCCTAAGTAGGAA
AAAGCCCT---AAGTGTTGGTTTTGGAATAAAAAGTACTCCCTCCGTCCCATAATATAATAGTGTCAAAAACGTTCTTAT
ATTATGGGACGAAGGGAATACTAGCTTTACTCTTTTTTT---------TCTTCTTCTGCTTGAGCAG-------GACATC
TAAAGTTCAAAGTGTAAAAACTCAGCTTTGTATAACTGGTGATT---CATTTAATTAGAAGCCAGAAGATGATTCATGCA
GTTTAGAGAC--TTTCAAGCTATACTTGTTGATTTAAGCAGCTGGTCATCCTGCTGCAAATCTAGAACCTCAGTTGCATT
CAGTATTATCCATTCAGGAAAAGCACAT----------------------------------------------------
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>chr3A_1
CACCTGCTTGATTTATCGATTCAACTTTCGTCAGGAGAAAGGGGAATGTTGTGTTGTGGAGTTTATGCACAAAGCACCTC
GAAATTAGCTAATTGGTTTCTTCTGTCGCAGTTCTTTGATACTGTAGCCATGCCCATTCTTTGGGTGAATGGATCAAATT
TTATGGTGGTTGATCCATTAGACATCCTGATGAAATAATAGTGTGATTGTGTGAGGAAAAAGCCCTGTTACTTCTGGGTA
AGTGACCACCGAACAAGATATAAAGATGAATGTATTCTTACTTTGGGCCTTTTTTGGCTCGCTAACACATAAGTGAGAAG
TGCGATTGTGCTGTGGGCTCCCAACAGATTATTATCCAAAATTTCTCCTCAACCATGTAGTATGTCGGTGATCCATTGTG
AGAGACTGATAGCAAGTCAGAATGAAACGGTTTGTTTCACCTGATTCTA--TTTTTTGTTATTGAACACATATGCGAGCT
GTGTATTTGTAAACGATTAATCATAATGTTGTGCTGTAC-------AATTGAAGATGGCCTCTCCATTTTTCTGAAGAAG
ACATGTACAACTGATGTCATGTTCTTTTCTGATGATGCATTCTGGAAGGATTGCTGTTCAGGTACAAGATGTACACATCA
GTGCTTTCTTATTTTCTTAGTTTAGTGGATCACACATGTCTCATCTTGCAGTGTTTCCTTGAATAAAAGTGCATTTTTGT
ATTGCATAGAAACTGAAGACACGTGGTGCATGAGTTACTCCATGCACGCGTCACGTGACATAATTGCCTGGTCTGAGAAA
TGAAACTACTACGTGTACTGATTATATG------------------------------TGTACGATGTATCAGTAGAAGT
TTCCATGGGCCTATCTATTTGTTCGGTGAAATCTTCCTGTGAGCAACCTACAAAACCGTAAACCCTACTTCCACCTTACC
ATCTTTGGGAGCGCATATATACGCGTACAATCGTACACACGCATCTCTCTCCTCTCTGCACTGTAGACAGCGCCGGG---
CGACATGACCGGCGGCGTGAACGGCAACGGCGGAGGAGGA------GGCGGCAACGGCGGGGCGTGCGCGGTGTGCAAGC
ACCAGCGGCGCAAGTGCGAGCCCAACTGCGAGCTGGCCGCCTACTTCCCGGCCAACAGGATGAACGACTTCCGCGCGCTG
CACCTCGTCTTCGGGGTGGCCAACCTCACCAAGCTCATCAAGGCCAACGCCACCGAGGCGGCGCGGCGGCGCGCCGCCGA
GACGCTGACGTGGGAGGCGCGGTGGCGCGAGCGCGACCCCTCCGAGGGGTGCTACCGCGAGGTCTCCTGCCTCCGCCGCG
AGAACGCTGTGCTGCGCGCCGAGAACGCCGCGCTCAGGCGCCGGGCCAACCAGTGCGCGTGCTGCGCCACCACGTTG---
---CAGCAGCAGCAGCAGCAGCAGATACTGCTCGTCTCGGCTTACAACAACGGCGCCCGGCCCCCCGGCGGCGTGCTGCA
CGGCGCCAGCGCCGGGGTCGTGCCCGGCGGCTTCTACAGCGGCAATGCCGGCGCCGTCCGTGCCGCCAATGGCAACGGGG
CGATGCCCGCGCGGCCTCACGTGTCAGCTCCGGCGCCGCAGACGACGATGGCCGGGTACGCGCAGGGGGATCGCCACCAC
GCCGCGTCCGGCGGAGCGAACGGCACCGGC---------------GCAGCTGGTCAGGCGGAGCCCAGGGAGAAGAGCAG
CGCGAGGTAAGTTGAGGACGCTTCTCATTAATTCTTCCGTTGAGGTGGAGGTTTGCATTGCATGGTGG------ATATA-
-TATGGGCTTCTTCTACGCGTCGTGTTTTGT-AAATGCAGGTGTGACGCTCAGCGCACAGCTAGCTAGCAGTGGGCAGTG
AGAGAAGATGAAGGCCCCAAACCCTAGGCTGACTACAGAAATTCAACTGTTTCCTATGAAATTCATGTCCTAAGTAGGAA
CAAGCCCT---AAGTATTGGTTTTGGAATAAAAAGTAGGT---------TTACTTCATCT--------------------
------------------------------TTTTTTTTGTGTGTGTGTTTCTCTTCTGCTTGAGCAG-------GATATC
TAAAGTTCAAAGTGTAAAAACTCAGCTTTGTATAACTGGTGATT---CATTTAATTAGAAGCCAGAAGATGATACATGCA
TTTTAGAGATTATTTCAAGCTATGCTTGTTGATTTAAGCAGCTGGTCATCCTGCTGCAAATCTAGAACCTCAGTTGCATT
CAGTATTACCCATTCAGGAAAAGCACAT----------------------------------------------------
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>chr1B_2684
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--------------------GTATCCGGCTTTAGTTTACAATCTCATAGATAGGTGAAACAACATGGTACCCCATTCGCG
CAGCAAACCTTGCGCTTGCTCATTAGTACATCTGCTAGACCAAAGCAGAATATCATCAGCGGCAGAACGAGCGATGAGGT
GAACCGGTTGAATGTCGTCCCTGAAGACTTTTGCATTCCTTCTTTTCCAAATGTTCCAAAGGATGGCGATGATTATTGTA
GAGCGAACTTTATTCTGCATGTCGTTGGCCCAAAGATCCGAAAGATCTGCGGGTATATCTGGAGTGAGAGAGGAGAGTTC
TCTCCACAGAGTAGTGAGCTCCGGGCAGTGCAGAAGCAGGTGGTTTACGGACTCTGTCCCCGGACAGAGAGGGCAAGCCG
GAGAAGTAGCGATGCCTCGACGAAAACGCCGTTCGTTGGTGAAGAGACGATTCTTGTTTGCCAGCCAGAGGAAAATTCTA
CATTTGTTTGGAGCGAAATTCTTCCAGATGGCCATTGCCAAGGGATCGACAGGCTCTCCCTCCCACATAGCCTTGTATGC
CGCGTTGCAAGTCAGCGGCTTGCCATCAAATCGACCTGTTCGGCGGTCTAGTTCCTGCAAATTCAAGGAAACAGAAGCCA
GCAAGTTGCGTAGGCAGCCCAGTTCAAGTTCAGCAGCATTAGTTAGGCGTGGAGCGAGATCGAGGCACAGATCCGGNNNN
NNNNNNCTTGCGCTTGCTCATTAGTACATCTGCTAGACCAAAGCAGAACATCATCAGCGGCAGAACGAGCGATGAGGTGA
ACCGGTTGAGTGTCGTCCCTGAAGACTTTTGCATTC
>SNPs
--------------S-----------------------------S----------------S-----------------S
-----S-------------S---------------------------------------S--------------------
-----------------------------------------------------------------S--------------
---------------------------------S----------------------------------------------
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----------------------------------------------S-SSS--------------S--------------
SS----------S-------------------------------------------------------------------
----------------S-----------------------------------S---------------------------
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--------------------------------S--S--------------------------------------------
----------------------------------------SS-S------------------------------------
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---------------------------------------S--SSSS----------------------------------
-------S------------------------------------------------------------------------
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-----------------------------------------------------------------------------SSS
SSS-----------------------------------------------------------------------------
----------S----------------------------------------------------S---------------S
----------------------------------------S---------------------------------------
--------------------------------------------------------------------S-----------
-----------S-----------------------------------S--------------------SSSSSS------
--------------------------S-------------------------------S---------------------
------------------------------------S----------------S--S-----------S----S------
-S------SSS--------S--S-----------SS-SSSSS-S--SSS--S----------------------------
-----------------------------------S-SS--------------------S-------SSSSSSS---S--
S------------------S-S----------------------SSS---------------S---------SS------
-S-------S-S--SS----S--------------------------------S--------------S------S-S--
--S-----------SS--S----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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>forward_45
-------------------------CTTTGGTCAGGAGAAGGGGC-----------------------------------
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>reverse_2140
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-----------------------------------------------------------CTGAGCAGTGAGCAGGATGT-
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