>input_sequence_66897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CCA
CCAAGCAAAGAAACACACGCGCAAGCGCGCAACGACTGCCTGCCCCG----------GGCGCTCGCG-GTGGTGACCATG
GACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC------------CC---GCCGCCGCCGCGCCGGCCCCCGT
CAGCGTGGACGACGTATCCGACGCAGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGC
TCGTCTCCGGTGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCGACACCGCCGCCTGCTCCTTCGCAGCAGGAGCAGCTGC------------T
GCCCGCCGACGAGCGCGTGGCCGAGAACGCGTCCCCGCCGCGGCGGCCCGTCCCCCGCGGCCTGGACCTCAACGCCGAGC
CGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCAACCCGCACGGACGACGAGGACCCCTGGCCTGGGCGCGCCCCCGCA
----------CGGACGGACG----------------------CGCGCGCGCGCTGGCCGGCGGCGACACTCTCC-----C
CTCTGTACCACCACCCGCCGCCCGGC-GGCCGGTG-CTTTTTAGCAAACTGATCACCGTCATCATTTGTTAGTTACCTTA
CCAATGGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AACACGAAAATACA
TTGACGAAGACAAGTTTGGTGGTCATCTTTATTTATTGGTATGTCCATATCATTTCTATATAATGTGTGCTTGCTTCATT
TGGACGGCTTTAACCACAGCCCTCTACTGCCAGGTCTGAGATTGGTGTCTGCGTCCTCAAGGAATCATTTACGCGTTTTC
CTTCTCTTTCCACAGTAATAATTTATTTTTCTGATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G042700
GCTCCCTCATGAACAGTAAAAATCAAACAAGAGGTGAAAGTAAATAAGTAAATCTATTTTTTAA--TAAACATTGGCAAA
TTGTCTATATACGCACAATTTTTTATGAAGAAAAAACGTTCCTAAATGCTCCGGGAAAGGAACAAAAGCGATGCTCCAAA
AATAATATTTTGAAGGTATGT-GGAGCATTATTAT-TTTCAGAACATTAGGAAGGT-TTTTTCACAGAAATTCGCACATA
T----------------------------ATAAAATTCATTATTTTTACTATTTTATTTTACTGTTCG---TTTTAATAT
TACAAGTGTAAAGAGTAAAGAGTAAACCTAGGTTTGATTTTTTT----------TATGTATTTTACGGTGTCTGAAGAGT
GCCGCGTACTCCTATCTTTTCTTTTCTTTTCTTTGGAATGACTGCTCGTGTCGTGTGTATGATTAAGA------------
-------TGCGCACGCGTGGGTTGCTTCTCATGGCGAAACTGCAGACGAGTGTGCACACGTAGGCACCATGACGAAGTTG
GAGAGCCATTCGTCGGGAACCACTGGTGGGCACGAGGAACAAGCGTGTGTTGTCGACCCGACCATGAAGTTCTGCCAAGG
CCCAGCTATGCCGTTGGCGTACCACCCCACTACACCATGACA-AGACTGACAATTCCCAGCGCATCCGAATCGACCGGCT
GATGTTTCGGGCATATCTTTGAAAGTTCAACACCTACAAACAAATCGAGCGGCAATGGCAATGGCAATGAGCAGTGCCAG
TGCCAGGCAGTTCTCGCTGGGTCGCGGCGCTTCACACCTGCAGC-------------------------ACGTACGTACA
ACGGTACAAGGGACAGGTCTCGTGAGCA-----GGATGGGTGGTGGAGTCGGTCGCCGTCCCGTCTTGAAAAAAAGGCAG
CG--CCTTTTTCTA-----GCTCTCTCAATGGTTTTCCGGCCGGTGGCCATTCTTTCTGGGGATCAT-ATAAGCGTCGGC
TTCCGGGGCTTCTTTTCTTCCGAGGCAC----TCGTCCAGA---------CCAGCCGCGGAAGCACCCACCGCTCACCCA
CCAAGCAAAGAAACACACGCGCAAGCGCGCAACGACTGCCTGCCCCG----------GGCGCTCGCG-GTGGTGACCATG
GACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC------------CC---GCCGCCGCCGCGCCGGCCCCCGT
CAGCGTGGACGACGTATCCGACGCAGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGC
TCGTCTCCGGTGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCGACACCGCCGCCTGCTCCTTCGCAGCAGGAGCAGCTGC------------T
GCCCGCCGACGAGCGCGTGGCCGAGAACGCGTCCCCGCCGCGGCGGCCCGTCCCCCGCGGCCTGGACCTCAACGCCGAGC
CGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCAACCCGCACGGACGACGAGGACCCCTGGCCTGGGCGCGCCCCCGCA
----------CGGACGGACG----------------------CGCGCGCGCGCTGGCCGGCGGCGACACTCTCC-----C
CTCTGTACCACCACCCGCCGCCCGGC-GGCCGGTG-CTTTTTAGCAAACTGATCACCGTCATCATTTGTTAGTTACCTTA
CCAATGGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AACACGAAAATACA
TTGACGAAGACAAGTTTGGTGGTCATCTTTATTTATTGGTATGTCCATATCATTTCTATATAATGTGTGCTTGCTTCATT
TGGACGGCTTTAACCACAGCCCTCTACTGCCAGGTCTGAGATTGGTGTCTGCGTCCTCAAGGAATCATTTACGCGTTTTC
CTTCTCTTTCCACAGTAATAATTTATTTTTCTGATGAGTAATTGACCAATACTCGGCGTAAGACTGGAATCGGTGCAGTG
TTTTGTCACCAAAATAAAATAAATGCTCTGTCTGCAAGTTAAGGAAACTGTACAGTTAATTTGCAGTGTGAAAAGCGCAG
CGCGGTAAATCAGAGTCAAAAAAGACTGCTAGGAGTACCATGTTCTCGCCCTGTTTTCTGTAGGACAAGAAAGTGGAGTG
CAGTCATGTTTTCCCTTTATATTTGTTGATTGATGGGTCGATCCCTAGACACTATGAGTAAACAGGAGTAGAAATTTGCA
TGTCTAATCACGCGAGAAAGATCAAACCTCATAGTCTAACCTCTAAATATTGTACTGTACCACGATCTCTCTAAAAACAA
AGAAGATTGTAGCACGATCCTTTCAGTTTGGTCTGCTGACCGTGGAATCGCCTTCTGAATGCGTCACGCGCGCCTTGACA
GCATGACCTAATAACCACTCGGGCCATGCCATTATTCTACCCGGTCAGGAAAACTGCTCGCTTTATACGTTCCGCGACGA
CTACGTACAGTCCAGTAATAGTAATAATAAAGATACAGACACAAGGTATCAACTACGTACAGTCCAGTAATAGTAATAAT
AAAGATACCGACACAAGGTGACAAAATTTTGTGTTTTGACTCTTTTTTGAAACTTATTCGAGAACTGACCCTAGGTTGAA
ATTTTTTCGAGATCTGACCCTTTTGCTACCGTCAGAGTGCATGGCGGTAGGGTCTAACAGCCTACCGCCAGGGACTTTGA
CGGTAGGAAATTTCTGTACCGCCAAACGGGCTGGCGGTAGCCTGCACAACCCTACCGCCAAGATGTTTGGCGGTAGGCAC
GAGCACGCACTGTATTCAATACTTAGGAGGTTTTTGACGGTAGGACATGCAACCCTGCCGCCAGGGTCCTTGGCCATAGG
CTGTTATACCCTACCGTCATGGTCCCTTGCGGTAGGAAAAAAGTCAGATCTCGATTTTTTTTCAAACTAGAATCAG
>chr3B_2
-CTCCCTCATGAACAGTAAAAATCAAACAAAAGGTAAAAAT-AATAAGTAGATCTGTTTTTGAAAATAAACATTGAC-AA
TTGTCTATATACACACATTTTTTTATGAAGGAAAAACATTCCTAAATGCTCTGGGAAAGGAACAAAACCGATACTCCAAA
AATACTATTTTGAAGGTATGTTGGGGCATTATTTTGTTACAGAACGTTAGGAAGGTGTTTTTTACGGAAATTTGCACATA
TGTACAAAATTTGTCGATGTTTGTTGCCAATAAAATTCATTATTATTACTATTTTATTTTACTTTTCATTTTTTTTAAAT
TACAAGTGTCTGAAGAGTGCCGGGTACTCCCATTTTCTGGAGTGGTTGGTTGGGTATGCATTTTACGATGTCTGAAGAGT
GCCGGGTACTCCTACCATTT-----------------------------------TGTATGATTAAGGAGATGCAGCACC
CAGCTGGTGCGCATGCGTGGCCTGCTTCCCGTGTCGAAACTGCAGACGGTTGTGCTGACGTAGGCACCATGACGAAGTTG
GAGAGCTATTCGTTGGGAATCACTGGTGGGCACGACGAACACGCGTGCGCGGT-----CGACCATGAAGTTTTGATTCAT
GCAGAGC-------------ACCACTCGACTACACGATGACACACACTGACAATTCTCGATGCATCCGAATCGACCGTGT
GATGTTTCGGGCAT--CCTTGAAAGTTCCACATCTACAAACAGACGAG--------------------GAGCAGTGCCAG
TGCCACGCAATTCTCGTTGGGTCCCGGTGCTTCACACCTGCAGTGCGTACGTAGCCAGTGCGCGTACGTACGTGCGTACA
ACGGTACAAAGTACAGCTCTCGTGAGCAGGATGGGATGGGTGGTGGAGTCAGTCGCCGTCCCGTCTTAAAAAAAAGGCAG
CG--CCTTTTTTT-TCACCGCTCTCTAAATTGTTCTCCAACCGGTGGCCATTCTTTCTGGGGATCAT-ATAAGCGTGGGC
-------GGTTCTTTTCTTCCGAGACACTCACTCGTCCAGA---------CCACCCGCGACAGCGCCCACCGCTCACCCA
CCAAGCAAAGGAACACACGCGCAACGACCGCCCCC-----------------------GCGCGCGCG-GTGGTGACCATG
GACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC------------CC---GCC---------CCGGCCCCCGT
CGGCGTCGACGACGTGTCGGACGCCGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGATGCCTCGCGCCGGC
TCGTCTCGGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGCCCCGCGCGCGCCCGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCGCCGCCGCCTCCTCCCTC---------------GCAGCAGCAGCAGCGGGA
GCCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCGGCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGC
CGGAGCCCGAGGTGCAAGCCTAGAGTAGAGCCGCACGGA----TGACGAGGACGACCCCTGGCCTCGGCGCGCCCCCGCA
GCTCGGCGTGCGCACGGACGGACGG----------------ACGCGCGCGCGCTGGCCGGCGGCGACACTCTCCATGCTC
CTCTGTACCACCGCCCGCCGCCCGGCCGGCGC--------TTAGCAAACTGATCACCGTCATCATTTGTTAGTTACCTTA
CCAGTGGTAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3D_437
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTGCTTCCCATGTCGAAACTGCAGACGGTTGTGCAGACGTAGGCACCATGACGAAGTTG
GAGAGCTATTCGTCGTG----------------------------------------CCCACCATGAAGTTCTGCCAAAC
CGCGGCTATTCCGTTGGCGTACCACCCCACTACACGATGACA-ACACTGACAACCCTCAGTGCATCCGAATCGACCGTGT
GATGTTTCGCGCAT--CTTTGAAAGTTCAACACCTACAAACAAACGAGCAGCTG-------TGGCAATGAGCAGTGCCAG
TGCCACGCAATTCTCGTTGGGTCGCGGTGCTTCACACCGGCAGT-------------------------ACGTACGTACA
ACAGTACAAGGTACAGTTCTCGTGAGCAGGATGGGATGGGTGGTGGAGTCAGTCGCCGTCCCGTCTTAAAAAAAGGGCAG
CG--CCTTTTTTTTTCACCGCTCTCT-AATTGTTTTCCAACCGGTGGCCATTCTTTCTGGGGATCAT-ATAAGCGTGGGC
TTCCGGGGGTTCTTTTCTTCCGAGACACTCACCCGTGCAGA---------CCACCCGCGACAGCACCCACCGCTCACCCA
CCAAGCAAAGAAACACACGCGCAACCGCGCAACGACTGCCTGTCCGCCCCGCGCGCTCGCGGTGGTCAGTGGTCACCATG
GACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCTCCGCCGCCGCAGCC---GCC---------CCGGCCCCCGT
CGGCGTCGACGACGTATCGGACGCCGAGGTCGAGGAGTTCTACGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGC
TCGTCTCCGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---GCCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCGACGCCGCCTCCTCCCTC---------------GCAGCAGCAACAGCGGGA
GCCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCGGCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGC
CGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCACGGA----CGACGAGGAC-------------------CCCTGGCC
----------CGGGCGCGCCCGCCCCCGCAGCTCCGCGTGCACGCGCGCGCGCTGGCCGGCGGCGACACTCTC-----TC
CGCTGTACCACCGCCCACCGCCCGGCCGGTGC--------TTAGCGAGCTGATCGCCGTCATCATTTGTTAGTTACCTTA
CCAGTGGTAATTCGGTATGTTTAAACCAGCACTACTACTGCTGCTGCTGTAGTACGACTACTTACTTTAATTTCTTCAGA
AACGTGCGTGCACATGGAAGGGTTACTGCTGTACCGTTGCTTCATTATTCGTGCCTGCTTATAATGGGAGATGCTTAGGG
AAGGTGCTTAGAGAAATAAACCAGACTTTTTTTAGCACCGGTGCCTATTTGTACAGAAGAGACGATTAACTAAGCATCTC
TCCTGTAGAAATAGGCACCGGTGCTACAGAAAAACTCGGTTTATTTTTCTAAGCACCTCTCTAAGCATCTCCCATTGTAC
AAGGCCTAACTGGAATGATTTTCTAGCTTAATCACAGCCCTATTATTGCTAACGCTGAGATCGGTAGTTTCAGTTTTTTT
GGGTGCATGTCTGAGTTCTGAATTTCCCTTCTCTTTCGAGACGAGTTAGTAGGCGTTTTTTTAATGTAAATACAATAGTT
AACAAATTATACTACTCCCTCGGATCCATATTACAAGGTGCGACAATAATATGGATCCGGGGTACTTATGTGCAGGTTAA
TTTCGACAATTAATATGGATCGGGGAGTAGTAGTTTTTATCAGAAGGCTCAATGTTTTGTGCAAGTTAATTTGTGGTCCA
ATCTTTCTGACTAGTCGACAGCGACCTAAACTATTCCTGTTCTACCTTTTTAAAATAAAATAAAAGAACACGAAAATACA
TTGACGAAGACAAGTTTGGTGGTCATCTTTATTTATTGATATGTCCCTC-CATTTCTATATTATTTGTGCTTGCTTCATT
TGGACGGCTTTAACCACAGCCCTGCTACTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr3B_825
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGGTGGAGTTAGTCGCCGTCCCGTCTTAAACAAAAGAAAA
AGAACCTTTTTTTA-------TCTCT-CTTTGTTTTCCAACCGGCGGCCATTCTTTTTGGATCATATAATAAGCGTAGGC
TTTCGGGTGTTCTTTTCCTCCGAGGCAGTCGCTCGTCCTGAGTACAGACTCCAGACACAAACGCACCCATACATCACACA
TCAAGCAAGCTCGTCCAGAGTCCAGAGT---------------------------------CGCGCG-CTGGTGACCATG
GACGCGCCGAGCGGCAACGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGT
CGGCGTCGAAGACGTATCCGACACCGAGGTCGAGGAGTTCTACGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGC
TCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCAGCGCCCCGGCTCCGGCCCCGCGCGCGCCGGCATGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC---------------GCAGC------------A
GCCCGCCGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGC
CGGAGCCGGAGGTCACCCCCTC--GTAGAGGCAC---GA----GGACGACGAC-------------------CCCTCGGA
----------CGGACGGACGGACGG----------------ACATGGGGGAGCTGGCCGGCGACGATACTCTCCT--CTC
CCCTGTACCACCCACCGCCCG-------GCCGGTGCTTTTTTAGCAAACTGATCATCTTCATCTGTTATT--TTACCTTA
CCA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3D_1034
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AACGACTGCCCACCCCG----------CGCGCTGGTGAGTGGTGACCATG
GACGCGCCGAGCGGCACGGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGT
CGGCGTCGATGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATCCTCCGCCGCATGCGGGACGCCTCCCGCCGGC
TCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCGCCCCGGCCCCG------CGCACGCCGGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCTCCATC---------------GCAGC------------A
GCCCGCCGACGAGCGCGTCGCCGAGAACGCCTCGCCGCCGCGGCGACCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGC
CGGAGCCAGAGGTCACCCCCTC--GTAGAGGCGC---GA----GGACGACGAT-------------------CCCTGGGA
----------CGGGCGGACGGACGG----------------ACGTGGGCGAGCTGGCCGTGGACGATACTCTCCT--CTC
CTCTGTACCACCCACCGCCCGCCGGCCGGCCGGTGCCTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTACCTTA
CCAGTGGCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr3A_1061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GTGGTGACCATG
GACGTGGCGAGCGGCACGGCCAAGCGCAAGCGCTCGTCCG------------CCGAAGCC---------CCGGCCCCCGT
CGGCGTCGACGACGTGTCCGACACCGAGGTCGAGGAGTTCTACGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGC
TCGCCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCGCCCCGGCTCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTC
TCCTGGGAGGACTTCGCCCCG---------ACACCGCCGCCTGCCCCGC---------AGCAGCAAC------------T
GCCCGCAGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCGGCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGC
CGGAGCCGGAGGTCACCCCCTC--GTAGAGGCGC---GA----GGACGACGAG-------------------CCCTG---
-----------GGACGGACGGACAG----------------ACGTGGGCGAGCTGGCCGGCGACGATACTCTCCT--CTC
CTCTGTACCACCCACCGCCCG---GCCGGCCGGTGCTTTTTTAGCAAACTGATCATCTTCATCTGTTAAT--TTACTTTA
CCGGTGGTAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
S-----------------------------S----S---S-S--------S----S-----S-------------S-S--
------------S----S------------S------S-------------S---------------S----S-------
----S-------------------S--------S----S------S----------------S--S------S-------
--------------------------------------------S------------------S---S-------S-S--
---------SSSS--SSSSSS-SSS--SSSSS---SS-SSSS-S--------------S--------S------------
----S---------S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------------
-------------S------S-------S----S--------------SS------S-----------------------
------S------------S---------------S-----S-----S-SS--SSSS---------------------SS
---S-----S-------------------------S--------S-----------S---S----------------SS-
--------------SS----------------------------SSSSSS-SSSSSSSSSS-------------------
-----S---S------S----------S---------------S------------------------------------
-----------S----S---------------------------------S----------------S------------
-----------S--------------S---S-------SS------------------------------------S---
--------S--------------------------------------------------S--------------------
---------------------------------------------------------S----------------------
------------------------------------------------------------SSSSSSSSS-----------
-S----S-----------------S-------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------S--SSSSSSSSSSS------S---------------
------------------S-----------S--S-----------------------------S----------------
-----------------------------------SSSSSSSS----------------------S--------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-------S-SS-----------S--S---------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AACAAATCGAGCGGCAATGG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_2685
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTGTCTGCGTCCTCAAGGAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_1773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTCTCCC
CTCTGTACCACCA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_3565
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CACAACCCTACCGCCAAGAT----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
