>input_sequence_66896
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------------------------------------------------------------------------ATGGACTC
GTCGTCGTCGCGCTCGGCGGCCTCCG---GGGCCGCGCCCACCGTGTCGTCCGGCACCGTGTTCATCTCGGCGGCCATAT
TCCTGCTGTTCCTGACGTTCGCCCTCGCGCTCATCATCCTCCGCCACTCTTACTTCAGCAGCACCGGC---GCGGCGCCC
A------------GTCG---GCCACGGGCGTGGAGCGCCCAGATGGTGGCCCCGCCTCCCAGGGCCAGGGGTGTCGACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTA-CACCGCGCCGCGGA-CC------GAGTCGGATCGGTGGAGTGCGCTGT
TTGCCTGGCTGGGCTCGAGGACGGGGAGGAGGCGAGGTTCCTGCCCCGGTGCGGCCATGGATTCCACACCGGGTGCGTC-
GACAGGTGGCTGGCGTCCCACACCACCTGCCCGCTCTGCCGGGTCACCGTCAGTA---------AGCCGGACGCGCTTAC
GTCGACGA---GTCGCCCTTCCGTACCGCGGGAGCCGGCGAACTACACAGCGAAC------CTGCCGGCGAGTGTACTGC
TCGGGGTTACAGACCAGGCCACGCTCGACGCGGTCACCATGGCCACTGACGGAACGATGGTGATCGACGTTCCGGAGTCC
AGGACCGTGGCACTGGCAGCGA---CCCCGCGCGACGCGTCCAAGTCTCCGGGCGTGAACAGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGCGGCAAGGGCCGTCGGGGTCCACGACGCCCTGCGCCGGCGGCAGCGGAACGGCAGACTTAGAGC
AGGGCATTAGCATCACCTATGCATCCCCGAGAGCTCCGGTCCGGTGTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GCGTTGAGCCGTCGCCCGGAACTGCCGCC------------
--------------------GAGAAATCAACTTCATCGAGCGGCTAA---------------------------------
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-------------------------------------------
>chr3A_1_TraesCS3A01G022400
ACTAGTAGTGCCCCAAGGTATCCTACAAGTCAGGTGCAGCTTGCAAGTCAGCCAAGATGAAAATCTGCCTCTTATCATTG
TCAGCTACAACAAAAGGGTACAAACAGGAAACACACTAAAAAAATAAGTATTAAGAAGACCACTAGATCTAGAGGTAAGA
TCAATTCTTCGGTTCAAGAAAGAGGTACAAGGAATATATATATTGTTACTATTCATCACCCAGGGTGCAGAATAAGTTAT
TCTTCATCCGAAGTAATCTTACGATCATTTCATAATTAAATTACATTTCAAATTCAAATAGTTACATTCCTATTGATTCA
CTACGTAAAATTTGACATAAGAAAATAAAAATATAGGTCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTTAGACTA
TGTTTTTACGTTTGTAATTTTACACAACATAAAATATTTTTTACGGCGATTATATATTTTCTTACGGTCCCTTTTTACGT
CGGAAATAAGACAAAACTTACGAAACGTAAAATTACGGTGAGGAATAGTTATTCTTTACGGCGCTATTCGTCACCCTAGG
TGAGGAATAGTTATTCTTCACCCCCCTTTATTTTACCATCAATGCACCGTAAGTGAGTTGTAGATTTCGTTGTATGTATG
TTTGTTCTTCTCTCCTTCTGTAAAGCTAAGATACGCAATTTGCGTACTCTTAAAAAAACCTATTCATCACCCAGGGTGCA
GAATAAATTATCATCTTCCACTCGTTGACTCGTCGGCATGCGCTGC---ACGACTCAATCCGCATGCCCCCTTCCTTC--
---------TCCCCTGCTTCTCCCATCCATGTCTGTCAGCGTCACTGACCTGGCCGCTTC-GCTCCAGCACTCCATCCGC
ATGTATATATTCCAGCTCGAGATGGAGGGAGGGAGGGAGCGCACGGTTCACTCTCACCACTCACCAC---------ACGC
AATTATTAACGACCGAAAGACCTGGAA----GTAGTACAACAAGACACCGACCTTCCACAG----GGCCGCCATGGACTC
GTCGTCGTCGCGCTCGGCGGCCTCCG---GGGCCGCGCCCACCGTGTCGTCCGGCACCGTGTTCATCTCGGCGGCCATAT
TCCTGCTGTTCCTGACGTTCGCCCTCGCGCTCATCATCCTCCGCCACTCTTACTTCAGCAGCACCGGC---GCGGCGCCC
A------------GTCG---GCCACGGGCGTGGAGCGCCCAGATGGTGGCCCCGCCTCCCAGGGCCAGGGGTGTCGACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTA-CACCGCGCCGCGGA-CC------GAGTCGGATCGGTGGAGTGCGCTGT
TTGCCTGGCTGGGCTCGAGGACGGGGAGGAGGCGAGGTTCCTGCCCCGGTGCGGCCATGGATTCCACACCGGGTGCGTC-
GACAGGTGGCTGGCGTCCCACACCACCTGCCCGCTCTGCCGGGTCACCGTCAGTA---------AGCCGGACGCGCTTAC
GTCGACGA---GTCGCCCTTCCGTACCGCGGGAGCCGGCGAACTACACAGCGAAC------CTGCCGGCGAGTGTACTGC
TCGGGGTTACAGACCAGGCCACGCTCGACGCGGTCACCATGGCCACTGACGGAACGATGGTGATCGACGTTCCGGAGTCC
AGGACCGTGGCACTGGCAGCGA---CCCCGCGCGACGCGTCCAAGTCTCCGGGCGTGAACAGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGCGGCAAGGGCCGTCGGGGTCCACGACGCCCTGCGCCGGCGGCAGCGGAACGGCAGACTTAGAGC
AGGGCATTAGCATCACCTATGCATCCCCGAGAGCTCCGGTCCGGTGTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GCGTTGAGCCGTCGCCCGGAACTGCCGCC------------
--------------------GAGAAATCAACTTCATCGAGCGGCTAAGCTATATACGTACATATTTACACATGCATGGTG
GTATATATAGGACATAGCCGCATAGACGTCCTTTTAAAGATTGG---TACAGTATATGA-----------TGATGTTCTT
TGATAGCTATCAATCGATCAGAAAATGAGGACTAAAAGTTATCCTTGA----GAGAATCACTAGCTCCATATGTGTGTCA
GCGTGCGAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CCT-------ACGTAACATCCAACAGCAAAG
TTTATAAGTGCGAATCAACCTGTGGTTGAGTTGGTTAGGTGGACAGTGGTATCCCCAACCCACCAGGGTTCAAATCCTGG
TGCTCATATTATTCTTGGATTTATTTCAGAATTTCCGGTGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGA
GGCGCCTACGGTGACTTCGTAAATTTCAAGATGATATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGTGC
GTGCGTGCGTTCATAGGGGTGAGTGTATGCGCGTGTATATGAGTGCTTGTGTCTGTACTGATGCTCAAAAAAAAGCAAAG
TTTA----------------------------------------------------------------------------
-------------------------------------------------------------TAAGTGGACAATCAATATC
AAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------GTTTATTGAAAAAAGTCTGCACTTTAACCCTGAAC
TAACCGCACGGTTTAAAACTCAACGCTCAATTCTAAAACCAGCCGATATACATGCCGAACTAACCACGAGTCCAAATAGC
ACGAAGCATCAAGCAACATACAAGTAAACGGATGCAAGAAGCGTGTGGAGTGCAATGCGAGACGGCGAATGCAAACAGAA
GGCGACCCGAATATAAAGAGAAAGAAGCA---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------TGCTGGACACGATTCCATG
CACGACACAAACCGACTTAAAGAGACAAGGACAAAAAAATGGCGGCAACAAGCCACTGACCGATAGGATCCAAAACACAT
GATAGACAATCACTCTGCCAAAGAGAGACACTGCGATGAGTAAAACAGCATACGTCTGGACAAACAAAGTCCTGGTCAGG
CGTACACAAGCAATACACCCGCAAGCCGGTCGCTCGAGCCTGC
>chr3D_741
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------CTCGTTGACTCGTCGTCATGCGCTGCTGCACGACTGCATCTGCATGCCCCCTTCCTTCCA
GCTTCTTTCTCCCCTGCTTCATCCATCCATGTCTGTCAGCGTCACTGACCTGGCCTCTTC-GCTCGAGCACTCCATCCGC
ATGTATATATTCCAGCTCGAGATGGAGG--------GAGCGCACGGCTCACTC--ACCACTCACCACTCACACGGAACGG
AATTATTCACGACCGAAAGACCTGGTAGCTGGTAGTACAACAAGACACCGACACACCACAGGGCCGGCCGCCATGGACTC
GTCGTCGTCGCGCTCGGCGGCCTCCG---GGGCCGTGCCCACCGTGTCGTCCGGCGCTGCGTTCATCTCCGCGGCCATAT
TCCTGCTGTTCCTCACGTTCGCCCTCGCGCTCATCATCCTCCGCCACTCTTACTTCAA---CACCGGC---GCGGCGCCC
A------------CTCG---GCCGCTGGCGTGGAGCGCCCAGATGGTGGCCCCGCCTCCCAGGACCAGGGGTGTCGACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTA-TACCGCGCCGTGGA-CG------GAGTCGGATCGGTGGAGTGCGCGGT
TTGCCTGGCCGAGCTCGAGGACGGGGAGGAGGCGAGGTTCCTGCCCCGGTGCGGCCATGGATTCCACGCCGGGTGCGTC-
GACAGGTGGCTGGCGTTCCACACCACCTGCCCGCTCTGCCGGGTCACCGTCGGTA---------AGCCGGACGCGCTTAC
GTCGACGA---GTCTCCCTTCCGTACCGCGGGAGCCGGCGAACTACACAGCGAAC------CTGCCGGCGAGTGTACTGC
TCGGGGTTACAGACCAGGCCACGCTCGACGCGGTCACCATGGCCACTGACGGAACGGTGGTGATCGACGTTCCGGAGTCA
AGGACCGTGGCACTGGCAGCGA---CCCCGCGCGACGCGTCCAAGTCTCCGGGCGTGAACAGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGCGGCAAGGACCGTCGGGGTCCTCTACGCCCTGCGCCGGCGGCAGTGGAACGGCAGACTTAGAGC
AGGGCATTAG----------------------------------------------------------------------
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-------------------------------------------
>chr3B_741
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--------------------CTCGTTGACTCGTCGTCACGCGCTGC---ACGACTGCATCTGAATGGCCCCTTCCTTCCA
GCTTCTTTCTCCCCTGCTTCATCCATCCATGTCAGTCAGCATCACTGACCTGGCCTCTAAAGCTCGATCACTCCATCCGC
ATGTATATATTCCAGCTCGAGATGGAGG--------GAGCGCACGGTTCACTC--ACCACTCACCAC---------ACAG
AATTATCAACGACCAAAAGA-----------------------------------CCACAG----GGCCGCCATGGACTC
GTCGTCATCGCGCTCGGCGGCCTCCG---GGGCCACGCCCACCGTGTCGTCCGGCGCCGTGTTCATCTCGGCGGCCATCT
TCCTGCTGTTCCTGACGTTCGCCCTCGCGCTCCTCATCCTCCGCCACACTTACTTCAG---CAGCACCAGC---GCGGCG
CCCAGCGGTCGTCGTCC---GGCA------TGGGGCGCCCAGATGGTGGCCCCGCCT------CCGAGGGGCGTCGACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTA-CACCGCGCCGCGGA-CG------GCGTCGGATTGGTGGAGTGCGCGGT
TTGCCTGGCCGAGCTCGAGAACGGGGAGGAGGCGAGGTTCCTGCCCCGGTGCGGCCATGGATTCCACGCCGGGTGCGTC-
AACAGGTGGCTGGCGTCCCACACCACCTGCCCGCTCTGCCGAGTCACCGTCGGCA---------AGCCTGACGCGCTTAC
ATCGACGACGAGTCTCGCTCCCGTACCGCCGGAGCCGGCGAACTACGCAGCCAAC------CTACCGGCGAGTGTGCTGC
TCGGGGTTTCAGACCAGGCCACGCTTGGCGCGCTCACCATGGCCACCGACGGAGTGCTGGTGATCGACGTTCCGGAGCCA
AGGATGG------TGGCAGCGA---TCTCGCGCGACGCGTCCAAGTCTCCGGGCGTGAACAGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGAGGCAAGTGCCGTCGGGGTACACTACGCCCTGCGCCGGCTGCAGTGGAACGGCAGACGTAGAGC
AGGGCATTAGCATCACCTATGCATCCCCGAGAGCTCCGGTCCGGTGTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GCGTTGACA--------------------------------
---------------------------------CATGGAGCGGCTAAGTTATATACGTACATATTTACACG----TGGTG
GTATATATAGGACATAGCCGCATAGACATTCTTTTAAAGATTAG---TACAGTATATGA-----------TGATGTTCTT
TGATAGCTACCGATCGATCAGAAAATGAGGACTAAAAGTTATCCTTGA----GAGAATCACTAGCTCCATATGTGTGTCA
GCGTGTGAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------CCTTTCTAGGACGTAACATCCAACAGCAAAG
TTTAT---------------------------------------------------------------------------
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-------------------------------------------
>chr3D_991
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----------------------------------------------------------CAG----GGCCGCCATGGACTC
GTCGTCGTCGCGCT---------------GGGCCGCGCCCGCCGTGTCGGCCGGCGGCGTGCTCGCCTCGGCGGCCATCT
TCCTGCTGTGCATGACGTTCGCCCACGCGCTCATCTTCCTCCACCACCGCTACTTCAG---CACCGGCGTCGTC---GCG
CCCAGCGGTCGTCGTCG---GGCGCGCGCGCGGAGCGCCCGGACGGCGGCCCCGCCT------GCCAAGGGCGTCGACCC
GGAGCTGCTGCGGTCGCTGCAGGTCACGGTG-TACCGCGCCGCGGA-CGACGTCGGAATCGGATTGGTGGACTGCGCGGT
GTGCCTGGCCGGGCTCGAGGACGGGGAGGAGGCGAGGTTCCTGCCCGGGTGCGGCCACGGGTTCCACGCGGGGTGCGTC-
GACAGGTGGCTGGCGTCCCACACCACCTGCCCGCTCTGCCGGGTCACCGTCGTCGGCAAGCCCGACCCAGAGGCTTCGAC
GTCCACGA---GTCTCCCTCCCGTACCTCCGGAGCCGGCGAACTACGCAGCGAACCTGCAGCTGCCGGCGAGTGTGCTGC
TCGGGGTTACAGACCAGACCACGCTCGGTGCGGTGACCGCGGCCACCGAGGGAGTGCTGGTGATCGACGTTCCGGAGTCA
ATGATGG------TGGCAGCGG---CCCCGCGCGACGCGTCCAAGTCTCCGGGAGTGGCCGGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGAGGCAAGGGCCGTCGGGGTCCACTACGCCCTGCGCCGGCGGCAGCGGAACGGCAGACGTAGAGC
GGCGCATTAGCATTCGAGGAGGAGAGGCGATTCCAGGCGGCGGAGGCGGCGGCGAGTCGCCCTCGAGCCCTTCCTCATGC
AGTCGAACAGAGTGCCAAAGAGAGATTAGGTTTAGGTGGTCGTGGGCTATTGGGCTCGCTCGGCTGCTCGGGGCTGCGCT
CTGTCGCTCGCCGTGTCCCAGGCGTGTATCAGCATTCTTTTTCTTTTCTTTTAAATAAAAAAACGGGATACTTCTTTGAT
ACGCGTATCCAAGCCGTATCGGCCGTATCGGCCGTATCGGCGTATCGGAGCCGTCCGGAACGGCGATACGGCACTTTCCT
GGCGTATCGGTGCTACGTAGCAGAGATCAGCTCGATCCAGTGCCTAAGCTGCTATAT-------------ATGTAGG---
-----TATAGGACATAGCCACATAGACATTCTTTTAAAGATTATTAGTACTCAGATCGCTACGATGAGGTTGATGTTCTT
CGATAGCAATCAATCCAGCTGAAAATGAGGAGTAAAAGTCATTCCTCAGACTGAGAGTCACCAGCTCCATAGTCCATACG
TGTGTGATCGTTTACTTGCTGGTCTTGTAGGTCTTCCTATGAGAATGATTATTCTACTGTACGTGCAAGGATATCCCATG
CATGAATCCACGGTTGCTTTGAGATTTGTGCTATTTTTTTTGGTTTGTTGTTAAAATATATCTCATTTCAAAATGTTTGG
TTCGGTTGTTTTTCTCTTGTTTCAACATGTATCATCATGTTTCATTACGAACCAATAAAAAAATGCACTTATATTAGATC
TGGTTTGCTGATAGACGACGACACACAATGAAACATTAAGGTACACTTTGAAACGAGAAGAAAAAAAAACACAATTTAAT
GCTTTGAAACAAGAAAAAGTAAATCTATAAACAGTAGTAGAAAAAGTAGCATGAATCTTAAAACAACCACAGACGAAGGA
TACATGCACGGGATATTAGAATTGTTTTTCTGGTCTTCCTAGCTAGAGCCCTTCCCGGGACGCACCATCTAGCAGCAAAT
TTTATTTTTAACAACTTCGCCTATCAGGTGGCTCCACCTCAGCATGTGCGGCTATGCATCTTTCTAGTATTTTGGATTCC
TTTGTCTGAATTTCCATGTATTTTCAAATATATCTGATGGGCCCGGTCCGTGTTTTTTAAAGAACAAAGATGTTTTCAAG
GTAATTTTTTTGAAAAAGCTCGAAAAGGAGTCAGTCATGTATCTGATATTTGGCTATTCAAATCTGCTCAGCCATTTCAT
TGGCATTCCAAGACAATCACCTTTTAACCTTTTGAATTATTTTAGTGACACTTTATTGGCTTACAAAGTTAGAGACTCAC
TTGTGCTGAAACACTACCTGGCCTCGGGCTGCCTTTGTTGGAGAGGTGAGATTGGATCATCCTCCCAAACGGGACTGCAA
AGAGGTCGATGGCTTCCTCGAGAGGGTAACAACACAATGCGCCAGCACCGCATAGTCCAACTAAGTGGACATGGATTTTC
ACTTGGAGCACAAGCAAGGGGAGGAAGGGAAGAATCGCGGCAGTGCCCCCAGGAGAGGCGTAACACTAGCAGGCATCACC
GCTATTGATGCCAAAGTGTTGAGCTTTTGCTTGGTATATTCCCCGTCCCAGGCCCCGCCTGCCTCGCCCGCCGCCGTTCG
TTTTGCGGGCCGACCCGTCCTTGCCTTCGCTTTGAGGCGGTGTGTTTGCCGTGTCGCCGAGTTGATCTTTCGGGTGGCCA
CCTATTTCCGATCCTCCACCTCTGTCGTCTCTGGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCGCTCCAATCGCAGTCTCCACCTTTATTTTGGATTGGTCGGGGATGTCGGAGTCCTA
TGTGACGGGTATCCGGACTCCCGCAAAGCCCCTGGGTTGTTTTCGGTTTATAGAAAAACTGATACCCGAACTGATTTGCG
GATAAATAC-GGGCTGTTTTGGATGACTTGTAGCATCCGGACC-------------GTTTGTGGACGATTTAG-GGGTCA
TGCTGGAATCTGAGGCTGCAAGTTTTGCAACACGGGAGCGGGGATCTCCGGCGTCTTCCTCAAGACGAGTGGACTGGTCA
CAATTCTGAATGAATCATACGCCATACGCCAGTTGCAGCTTGGAAACTTGGACGAGTGAGGA-----CCTCCTATGGAGA
GGGCGACGTATGGTAAAAACCTGCGGATTCGCACGTGAGCTCCCTGGACTGTTGACCCGTCGTCACGCATACGGATTGCT
CCACTCGGACTGTTGACCCGTCGTCATGCGCGCGCCGGTTCCAGCT-----------TCTTTCATCCATCCATGTCGACG
GCGCTCCCTCCCTCCGCGTCCGCGTCCGCATCCGCATGCATACATATACGAGTGACCTGGGGATGGAACGGACCGCATCT
TCACTCACCGAG-CCACACGCATGTCATGGACCCGTTCCACGGCATACTCATCGCGGCGGCCATCCTCGTGCTGTTCCTC
ATCTTCGTCGCCTTCCCGCTCAGCTTC---CTCCGCTACTACTTCAGCACCAGCGTCGCCGAGGTGCCCGCGCCGAGGGG
CGTCGGCACGGAGCTGCTGGGCTCGCTGCCGGTCACGGTGTACCGCACGGAGGACCACGTCGGGGTGCTGGAGTGCGCGG
TGTGCCTGGCCGGGCTCCAGGACGGGGAGCAGGCGAGGTTCCTGCCCTGCTGCGGCCACGGGTTCCACGCCGGGTGCATC
AGCGCGTGGCTGGCGTCCCGCCCCACCTGCCCGCTCTGCCGGGTCACCGTCGTCGGCAAGCTTCCCGACGCGCTTACATC
GACGAGTCTCCCTCCCACACCGCAGGAGCCCGCGAATTACGCCGGGAACCTGCCGGCGAGTGTGCT--------GATGCT
CGGGGTTTCAGACCAGGCCACGCTCGGCGCGGTGACCGTGGCCTCTGATGGA----------------------------
-------------------------------------------
>chr3B_1021
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------CTCGTCGGCGTCGCGCTGGGCCGCGCCCGCCGTGTCGGCTGCCGGCGTGCTCGCCTCGGCGGTCATCT
TCCTGCTGTGCATGACGTTCGCCCTCGCGCTCATCTTCCTCCACCATCGCTACTTCAG---CACCGGC---GTC---GCG
CTCAGCGGTCGTCGTCGTCGGGCGCGTGTGCGGAGCGCCCGGACGGCGGGTCCGCCT------GCCAGGGGCGTCGACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTAATACCGCGCCGCGGG-CG------ACGTCGGATTGGTGGACTGCGCGGT
GTGCCTGGCCGGGCTCGAGGACGGGGAGGAGGCGAGGTTCCTGCCCGGGTGCGGCCACGGGTTCCACGCCGGGTGCGTC-
GACAGGTGGCTGGCGGCCCACACCACCTGCCCGCTCTGCCGGGTCACTGTCGCCGGCAGGCCC------GAGGCTTCGAC
GTCGACGA---GTCTCCCTCACGTACCGTCGGAGCCGGCCAACTACGCAGCGAGCCTGCCGCTGCCGGCGAGTGTGCTGC
TCGGGGTCTCAGACCAGGCCACGCTGGGCGCGGTGACCGTGGCCACTGACGGAGTGCTGGTGATCGACGTTCCGGAGCCA
AGGATGG------TGGCAGCGACGACCCCGCGCGACGCGTCCAAGTCTCCCGGCGTGGCCGGGCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGAGGCAAGGGCCGTCGGGGTCCACCACGCCCTGCGCCGGCGGCAGCGCAACGGCAGACGTAGAGC
GGGGCATTGGCATCGCCTGCGCAACCCCG---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr3A_1077
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGGCCATCT
TCTTGCTGTTCATGACGTTGGCCCTCGCGCTCATCTTCCTCCACCACCACTACTTAAG---CACCGAC---GCGGCGGCG
CCCAGCGGTCGTCGTCG---GGCGTGCGCGCGGAGCGCCCAGGCGGCGGCCCCGCCT------CCCAGGGGCGTCAACCC
GGAGCTGCTGCGGTCGCTGCCGGTCACGGTG-TACCGCGGAAGACGTCG------GAGTCGGATTGATGGACTGCGCGGT
GTGCCTGGCCGGGCTCGACGACGGAGAGGACGCGAGGTTCCTGCCCGGGTGCGGCCACGGGTTCCACGCCCAGTGCGTCT
GACAGGTGGCTGCCGTCCCACACCACCTGCCCGCTCTGCCGGGTCACCGTCGTCAGCAGGCCC------GAGGCTTCGAC
GTCGACGG---GTCTCCCTCCCGTACCGCCGGAGCCGGCCAACTACGCAGCGAAC------CTGCCGGCGAGTGTGCTGC
TCGGGGTCTCAGACCAGGCCACGCTCCGCGCGGTGACTGTGGCCACCGACGGAGCGCTGGTGATCGACGTTCCGGAGTCA
ATGATGG------TGGCGGCGACT---CCGTGCGACGCGTCCAAGTCTCCGGGCGTGGCCGGCCTGAGGTCGGTGAAGAG
GCTGTGGAGCTTCGGGAGGCAAGGGCCGTCGGGCTCCACCACACCCTGCGCTGGCGGCAGCGGAACGGCAGACGTAGAGC
GGGGCATTGGCATCACCTGTGCAACCCCGAGATCCCCGGTGCAGCGTTAGGAATTGACA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCGGC------------
--------------------CAGATATCAGCTCGATCCAATGCCCAAGCTAT----GTACATATTTACACATGGAGG---
-----TATAGGACATAGCCACATAGACATTCTTTTGAACATTAC---TACTCAAATAGCTACGATGATTTTGAGGCGACT
GGC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------TTGCCATGTCGCTGAGTTGATCTTCCGGGTGGCTA
CCTATTCCGGATCATCCATCTCCGGTAGCTTCTTGTACGGGTCCATGCGGCGGCGGTGTTGAAAAGGACGGGAATTGGGG
TGGAGAACGGTGGGACGATTGCGGAGAGGGTGAAGAAAGGGGGCAAGGGGGCGAGTGCCCAGAAAACAGTGCGGGCCACT
CCAATGCGCGG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TCCACCTCTATTTTGGATTGGTCGGGGATGTCGGAGTCTTA
TGTGGCAGGTGTCCGGATTCTCGCAAAGCCCTTGTTTTGTTTCCGGTTTATTGAAAAACTTTCACCTGAACTGGTCTA-G
GATAAATACTGGACTGCACTGGATCACTTACAACGTCCGGACAACTCAGTCCAGATGTTTGTGAACGATTTAGGGGGTCA
TGCTGGAATGTGATGCTGCCGG-TTTGCACCACGGGGGCGGGGATCTCCGGCGTCTTCCTCAAGATGAGTGGACTGGTCA
CGGTTCTGAATGAAT-------CATACGCCAGTTGCAGCTTGGAAACTTGGACGAGCGAGGACCGGACCTCCTATGGAGA
GGGCGACGTGCGGTAAAAACCTGCGAGCTCCCTGTTGCA-----TGGACTGTTGACCCGTCGTCACGCATACGGATTGCT
CCACTCGGACTGTTGACCCGTCGTCATGCGCGCGCCGGTTCCAGCTTCTTTCTCCCCTCTTTCATCCATCCATGTCAACG
ACGCTCCCTCCCTGTCCCTCCGGGTCCGCATCCGCATGCATACATATACGAGTGACCTGGGGATGGAACGGACCGCATCT
TCACTCACCCAGCCCACACGCATGTCATGGACCCGTTCCACGGCATGCTCATCGCGGCGGCCATCCTCGTGCTCTTCCTC
ATCTTCGTCGCCTTCCCGCTCAGCTTCTTCCTCCGCTACTACTTCAGCACCGGCGTCCCTGAGGTGCCCGCGCCGAGGGG
CGTCGGCCCGGAGCTGCTGGGCTCGCTGCCGGTCACGGTGTACCGCACGGCGGACCACGTCGGGGTGGTGGAGTGCGCGG
TGTGCCTGGCCGGGCTCCAGGACGGGGAGCAGGCGAGGTTCCTGCCCTGCTGCGGCCACGGGTTCCACGCCGGGTGCATC
GGCGTGTGGCTGGCGTCCCGCTCCACCTGCCCGCTCTGCCGGGTCACCGTCGTCGGCAAGCTTCCGGACGCGCTTACATC
GACGAGTCTCCCTCCCACACCGCAGGAGCCCGCGAATTACGCCGGGAACCTGCCGGCGAGTGTGCTGAACTGCTGATGCT
CGGGGTTTCAGACCAGGCCACGCGCCGCGCGGTGACCGTGACCTCTGA--------------------------------
-------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------S-------------------SS---S-------------------
--------------------SS---------------------------------S---------S--------------
----------------------------SSSSSSSS-----------------SS------------------------S
-------------------------S--------------------------SSS-------------------------
-------------------------------------------------------S------------------------
----------------------------------------------------------SSS-------------------
--------------------------------------------------------------------------------
------------------------------------------------S----------------------------S--
---------S---------------------------------------------------------S------------
---------------------------------------------------S----------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------S----------------------S
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SS-S--S-------S----S-------------
--------------------S---S----S--S----------------------------------------S------
---------------------------S-S------------S-------------------------------------
--------------------------------------------------------------------------------
-----S--S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----SSS-SSS--SSSSS-SSSSSSS-S-SSSSSSSSSSS-SSS---SSSSSSSSS-S-SSS-SS-SS-SSSSSSS-SS
-SSSSS-SSSS---SSS-SS--S-SSS-S-SS-SSSSSS-SSS--S-SSSS--SSSSSS-SSSSSSSSSS-SSSSSSSSS
-SSSSS-SSSSSS-SSSSS-SS-SSSSS--SSSS-SSSSSSS--S-SSS-SSSSS-SSSSSSSS-SSSSSSSSSS-SSSS
SS--S-S-SSSS-S-SSSSSSSS-SS-SSSSSSSSSS---SSSS-SSSSSS-S-S-SSSSS-S-SS-SSS-S-SS-SS-S
--SS----------------------------------------------------------------------------
-----------------------------------------------------------------------SSS-S-S--
-SS-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SS-S-S-S-SSSSSSSS-S-SS
S-SSSSS--S-SSSSSS---SS-S-SSSS--SSS-SSSSS-S-SSSS-SS-SS-SS-SSSSSSSSSSSSS-SSSSSSSSS
SSSSS-S---SSSSSSSSS-SSSS-SSSSSS-S-SS--SS-S-SSSSSS-SSSSS-S-SSS-S-S---S--S-SSSSSS-
S-SSS-SSS-SS-SSS-S-SSSSSS-SSS---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-S----S--S--S---S
S----SS-SSS-SSS-SS-SS-SSSS-SSSSSSS--SS-S-S---S---SS---SSS--SS-SSSS--S-SSSSSSSSS-
SSSS-SSSSSS--SSS----SSSSSS-SSSSSSSSSS-S-SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_484
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CGGTCCCTTTTTACGT
CGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_3148
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TGCGCGTGTATATGAGTGCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------
